FFCP PHASE1:Mm9::chr1:79436614..79436655,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=20254|HGNC=|MCL_coexpression_id=608|UniProt=Q03517,Q4W8U9|association_with_transcript=9bp_to_ENSMUST00000049972,NM_009129,uc007bqr.1,uc007bqs.1_5end|description=CAGE_peak_2_at_Scg2_5end|id=chr1:79436614..79436655,-|ontology_enrichment_celltype=CL:0000540!7.47e-10!33;CL:0000047!7.47e-10!33;CL:0000031!7.47e-10!33;CL:0000404!7.47e-10!33;CL:0000117!1.37e-08!23;CL:0000337!1.37e-08!23;CL:0000393!2.23e-07!39;CL:0000211!2.23e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,7.96e-09,33;CL:0000047,7.96e-09,33;CL:0000031,7.96e-09,33;CL:0000404,7.96e-09,33;CL:0000117,3.55e-07,23;CL:0000337,3.55e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.45e-26!71;UBERON:0003075!3.45e-26!71;UBERON:0007284!3.45e-26!71;UBERON:0000073!8.02e-24!75;UBERON:0001016!8.02e-24!75;UBERON:0001017!2.44e-23!73;UBERON:0005743!2.44e-23!73;UBERON:0004121!1.08e-22!102;UBERON:0000924!1.08e-22!102;UBERON:0006601!1.08e-22!102;UBERON:0001049!5.88e-21!52;UBERON:0005068!5.88e-21!52;UBERON:0006241!5.88e-21!52;UBERON:0007135!5.88e-21!52;UBERON:0000955!2.11e-20!50;UBERON:0006238!2.11e-20!50;UBERON:0002616!1.30e-19!49;UBERON:0000033!7.55e-19!63;UBERON:0003056!5.89e-17!49;UBERON:0003080!1.02e-16!40;UBERON:0002780!5.83e-16!39;UBERON:0001890!5.83e-16!39;UBERON:0006240!5.83e-16!39;UBERON:0002020!1.46e-12!34;UBERON:0002791!3.80e-10!29;UBERON:0003528!3.80e-10!29;UBERON:0001893!3.80e-10!29;UBERON:0007811!3.04e-09!86;UBERON:0001894!3.12e-07!10;UBERON:0006222!3.12e-07!10;UBERON:0002021!3.22e-07!10;UBERON:0000411!3.22e-07!10;UBERON:0001950!3.22e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.62e-25,75;UBERON:0001017,1.94e-24,73;UBERON:0000073,1.62e-22,54;UBERON:0001049,5.05e-21,52;UBERON:0005068,5.05e-21,52;UBERON:0006241,5.05e-21,52;UBERON:0007135,5.05e-21,52;UBERON:0002346,3.06e-20,64;UBERON:0003075,3.06e-20,64;UBERON:0007284,3.06e-20,64;UBERON:0000955,3.61e-18,47;UBERON:0006238,3.61e-18,47;UBERON:0004121,5.69e-18,95;UBERON:0000924,5.69e-18,95;UBERON:0006601,5.69e-18,95;UBERON:0002616,2.41e-17,46;UBERON:0003080,4.38e-16,40;UBERON:0002780,2.80e-15,39;UBERON:0001890,2.80e-15,39;UBERON:0006240,2.80e-15,39;UBERON:0010371,5.12e-15,73;UBERON:0003056,1.36e-14,49;UBERON:0010314,2.33e-13,92;UBERON:0002020,1.13e-11,34;UBERON:0003528,4.15e-09,29;UBERON:0002791,4.15e-09,29;UBERON:0001893,4.15e-09,29;UBERON:0001894,7.16e-08,10;UBERON:0006222,7.16e-08,10;UBERON:0002021,7.42e-08,10;UBERON:0000411,7.42e-08,10;UBERON:0001950,7.42e-08,10|phase1_expression=0,0,0.454999239389536,0,0,3.18970616632591,1.63528848416868,0,0.140788722151667,0.234064526321993,0,0,0,0,0,0,0,0,0,0,19.3048268642928,0,0,1.75991665072747,2.2940928106717,0,0.430761996159075,0.215471232685889,0.760093677825496,0.252030129759931,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0.629484089877886,1.52065396829272,0,0,0,0,0,0,0,0,0,0,0,0,0,8.29497489524351,8.46385566835253,5.70448263155561,0,0,0,0,0,0,0,0.518448061542388,0.540023753326763,0.841299845405528,16.2821061110168,24.0746709637259,2.69479758272899,1.62937300731002,0.919218786610021,66.0695285996332,88.8703873072907,102.609164215171,6.59431438650969,10.3381037270723,16.6692278578163,74.2626777343673,133.374738577508,126.516949159199,41.2480019663135,60.2232209780205,12.6751623161204,2.42323818666189,8.31287161174641,0,0,0,0,0,0,6.88177658645584,0,0,0,0.422530259330042,0,0,0,0.216491041011214,0,0,2.74041311325744,0,154.379824627418,7.98032503124225,22.2259799167863,21.6778567420695,42.2023393547343,48.7993134613175,52.277301993145,0,0.433798070759735,0,0,0,0,3.72783522436244,47.7232699128822,37.7004072264219,3.57639877292028,0,0,0,171.809863397332,121.237659746936,20.7329680986226,85.8692141749846,92.057564638919,130.906468072523,124.43904877297,0.101839363850316,0,0,13.0473950649614,0.260240885925407,0.229902104433473,0.180062129805349,0.753524089178575,2.58538696775046,3.33095672740609,4.12287588062807,27.1638539275966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,87.4806186026769,14.6124549578584,3.96502539580558,2.11560453330835,0,0.696710015581316,0.77320476793256,3.02525286935014,2.2237804384487,4.1849637744763,3.32170343081158,4.28217282282428,3.51869292320377,6.56556357735798,6.82374304916921,2.69645822596266,4.97117514711797,2.19055400579804,0.379335801906163,0.913988100877831,1.1270773567308,0,0,0.350679099451593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0,0,0,0,0,0.238043640886014,0.390267295715598,0,0,0,0.163863314715738,0,0,0,0,0,0,134.380843819782,127.291891639133,0,0,3.78609863299508,2.73307121007647,9.04778270477756,4.06246956519338,5.56996685205985,3.96307143104365,7.2865926301481,8.47541987942804,9.48690667071656,181.546543778321,0,0,0.162886959353576,0,18.5843193675948,1.94224508923985,4.83717691143602,10.5618844663303,14.4697927511579,23.0576360957946,27.6518273689997,36.7169066772281,29.9457797843166,18.3301319602773,10.5418608574999,13.4076206222643,478.99852529558,5.04171063287669,10.3486947026204,25.0774330986963,90.088838690275,87.0439829898104,90.6665103517687,93.470739378182,0,0,2.8668691747145,0,0,0,0,0,3.78925087618806,117.559641474663,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,1.90934123603023,0.158167996790568,1.21991680276109,1.18805874903981,1.88179466413022,1.52853794622324,3.37160865962052,4.46328660916814,3.40282724579238,3.6292192521702,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,1.01362607645082,0.102710957164827,0,0.179026695667481,0.198681354781265,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,2.31827512838629,0,0,0.214368379079066,0,63.8169582157285,55.2390283808612,63.0185064783336,45.7129465034209,36.9944560676147,52.877572817279,60.7520250208625,64.3959320610635,75.221639891378,64.2022786572257,0.103787347584177,0.798049746802062,1.36586884603307,2.43106717068294,2.30574478890781,2.38996560985018,4.66718128383392,6.38708677440572,9.30665707816264,7.07552192938633,5.32306529769503,6.03604292435444,7.30403758265083,6.33849008808206,6.03072424033939,5.71552429539688,5.44656331940821,5.59436739344745,4.53294490883637,8.24313952752625,4.11443102862498,6.03417740941747,5.00715998889374,4.50573891560218,6.11710972699649,5.07687647350059,5.12198324043763,3.94604567156764,4.88894809845102,9.53941861818155,5.45721083371201,4.92522411877817,8.59385190656348,6.19747364743864,3.2794123866794,7.74412791607632,3.27504251823572,5.37177635120746,4.3996316375834,2.8676884485537,2.08681052058379|short_description=p2@Scg2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20254 | |||
|HGNC= | |||
|MCL_coexpression_id=608 | |||
|TSSclassifier=NA | |||
|UniProt=Q03517,Q4W8U9 | |||
|association_with_transcript=9bp_to_ENSMUST00000049972,NM_009129,uc007bqr.1,uc007bqs.1_5end | |||
|cluster_id=chr1:79436614..79436655,- | |||
|description=CAGE_peak_2_at_Scg2_5end | |||
|id=chr1:79436614..79436655,- | |||
|ontology_enrichment_celltype=CL:0000540!7.47e-10!33;CL:0000047!7.47e-10!33;CL:0000031!7.47e-10!33;CL:0000404!7.47e-10!33;CL:0000117!1.37e-08!23;CL:0000337!1.37e-08!23;CL:0000393!2.23e-07!39;CL:0000211!2.23e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.96e-09,33;CL:0000047,7.96e-09,33;CL:0000031,7.96e-09,33;CL:0000404,7.96e-09,33;CL:0000117,3.55e-07,23;CL:0000337,3.55e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.45e-26!71;UBERON:0003075!3.45e-26!71;UBERON:0007284!3.45e-26!71;UBERON:0000073!8.02e-24!75;UBERON:0001016!8.02e-24!75;UBERON:0001017!2.44e-23!73;UBERON:0005743!2.44e-23!73;UBERON:0004121!1.08e-22!102;UBERON:0000924!1.08e-22!102;UBERON:0006601!1.08e-22!102;UBERON:0001049!5.88e-21!52;UBERON:0005068!5.88e-21!52;UBERON:0006241!5.88e-21!52;UBERON:0007135!5.88e-21!52;UBERON:0000955!2.11e-20!50;UBERON:0006238!2.11e-20!50;UBERON:0002616!1.30e-19!49;UBERON:0000033!7.55e-19!63;UBERON:0003056!5.89e-17!49;UBERON:0003080!1.02e-16!40;UBERON:0002780!5.83e-16!39;UBERON:0001890!5.83e-16!39;UBERON:0006240!5.83e-16!39;UBERON:0002020!1.46e-12!34;UBERON:0002791!3.80e-10!29;UBERON:0003528!3.80e-10!29;UBERON:0001893!3.80e-10!29;UBERON:0007811!3.04e-09!86;UBERON:0001894!3.12e-07!10;UBERON:0006222!3.12e-07!10;UBERON:0002021!3.22e-07!10;UBERON:0000411!3.22e-07!10;UBERON:0001950!3.22e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.62e-25,75;UBERON:0001017,1.94e-24,73;UBERON:0000073,1.62e-22,54;UBERON:0001049,5.05e-21,52;UBERON:0005068,5.05e-21,52;UBERON:0006241,5.05e-21,52;UBERON:0007135,5.05e-21,52;UBERON:0002346,3.06e-20,64;UBERON:0003075,3.06e-20,64;UBERON:0007284,3.06e-20,64;UBERON:0000955,3.61e-18,47;UBERON:0006238,3.61e-18,47;UBERON:0004121,5.69e-18,95;UBERON:0000924,5.69e-18,95;UBERON:0006601,5.69e-18,95;UBERON:0002616,2.41e-17,46;UBERON:0003080,4.38e-16,40;UBERON:0002780,2.80e-15,39;UBERON:0001890,2.80e-15,39;UBERON:0006240,2.80e-15,39;UBERON:0010371,5.12e-15,73;UBERON:0003056,1.36e-14,49;UBERON:0010314,2.33e-13,92;UBERON:0002020,1.13e-11,34;UBERON:0003528,4.15e-09,29;UBERON:0002791,4.15e-09,29;UBERON:0001893,4.15e-09,29;UBERON:0001894,7.16e-08,10;UBERON:0006222,7.16e-08,10;UBERON:0002021,7.42e-08,10;UBERON:0000411,7.42e-08,10;UBERON:0001950,7.42e-08,10 | |||
|phase1_expression=0,0,0.454999239389536,0,0,3.18970616632591,1.63528848416868,0,0.140788722151667,0.234064526321993,0,0,0,0,0,0,0,0,0,0,19.3048268642928,0,0,1.75991665072747,2.2940928106717,0,0.430761996159075,0.215471232685889,0.760093677825496,0.252030129759931,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0.629484089877886,1.52065396829272,0,0,0,0,0,0,0,0,0,0,0,0,0,8.29497489524351,8.46385566835253,5.70448263155561,0,0,0,0,0,0,0,0.518448061542388,0.540023753326763,0.841299845405528,16.2821061110168,24.0746709637259,2.69479758272899,1.62937300731002,0.919218786610021,66.0695285996332,88.8703873072907,102.609164215171,6.59431438650969,10.3381037270723,16.6692278578163,74.2626777343673,133.374738577508,126.516949159199,41.2480019663135,60.2232209780205,12.6751623161204,2.42323818666189,8.31287161174641,0,0,0,0,0,0,6.88177658645584,0,0,0,0.422530259330042,0,0,0,0.216491041011214,0,0,2.74041311325744,0,154.379824627418,7.98032503124225,22.2259799167863,21.6778567420695,42.2023393547343,48.7993134613175,52.277301993145,0,0.433798070759735,0,0,0,0,3.72783522436244,47.7232699128822,37.7004072264219,3.57639877292028,0,0,0,171.809863397332,121.237659746936,20.7329680986226,85.8692141749846,92.057564638919,130.906468072523,124.43904877297,0.101839363850316,0,0,13.0473950649614,0.260240885925407,0.229902104433473,0.180062129805349,0.753524089178575,2.58538696775046,3.33095672740609,4.12287588062807,27.1638539275966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,87.4806186026769,14.6124549578584,3.96502539580558,2.11560453330835,0,0.696710015581316,0.77320476793256,3.02525286935014,2.2237804384487,4.1849637744763,3.32170343081158,4.28217282282428,3.51869292320377,6.56556357735798,6.82374304916921,2.69645822596266,4.97117514711797,2.19055400579804,0.379335801906163,0.913988100877831,1.1270773567308,0,0,0.350679099451593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0,0,0,0,0,0.238043640886014,0.390267295715598,0,0,0,0.163863314715738,0,0,0,0,0,0,134.380843819782,127.291891639133,0,0,3.78609863299508,2.73307121007647,9.04778270477756,4.06246956519338,5.56996685205985,3.96307143104365,7.2865926301481,8.47541987942804,9.48690667071656,181.546543778321,0,0,0.162886959353576,0,18.5843193675948,1.94224508923985,4.83717691143602,10.5618844663303,14.4697927511579,23.0576360957946,27.6518273689997,36.7169066772281,29.9457797843166,18.3301319602773,10.5418608574999,13.4076206222643,478.99852529558,5.04171063287669,10.3486947026204,25.0774330986963,90.088838690275,87.0439829898104,90.6665103517687,93.470739378182,0,0,2.8668691747145,0,0,0,0,0,3.78925087618806,117.559641474663,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,1.90934123603023,0.158167996790568,1.21991680276109,1.18805874903981,1.88179466413022,1.52853794622324,3.37160865962052,4.46328660916814,3.40282724579238,3.6292192521702,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,1.01362607645082,0.102710957164827,0,0.179026695667481,0.198681354781265,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,2.31827512838629,0,0,0.214368379079066,0,63.8169582157285,55.2390283808612,63.0185064783336,45.7129465034209,36.9944560676147,52.877572817279,60.7520250208625,64.3959320610635,75.221639891378,64.2022786572257,0.103787347584177,0.798049746802062,1.36586884603307,2.43106717068294,2.30574478890781,2.38996560985018,4.66718128383392,6.38708677440572,9.30665707816264,7.07552192938633,5.32306529769503,6.03604292435444,7.30403758265083,6.33849008808206,6.03072424033939,5.71552429539688,5.44656331940821,5.59436739344745,4.53294490883637,8.24313952752625,4.11443102862498,6.03417740941747,5.00715998889374,4.50573891560218,6.11710972699649,5.07687647350059,5.12198324043763,3.94604567156764,4.88894809845102,9.53941861818155,5.45721083371201,4.92522411877817,8.59385190656348,6.19747364743864,3.2794123866794,7.74412791607632,3.27504251823572,5.37177635120746,4.3996316375834,2.8676884485537,2.08681052058379 | |||
|short_description=p2@Scg2 | |||
}} |
Latest revision as of 15:46, 1 October 2015
Short description: | p2@Scg2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Scg2_5end |
Coexpression cluster: | MCL_coexpression_mm9:608 |
Association with transcript: | 9bp_to_ENSMUST00000049972, NM_009129, uc007bqr.1, uc007bqs.1_5end |
EntrezGene: | Scg2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.96e-09 | 33 |
neuronal stem cell | 7.96e-09 | 33 |
neuroblast | 7.96e-09 | 33 |
electrically signaling cell | 7.96e-09 | 33 |
CNS neuron (sensu Vertebrata) | 3.55e-07 | 23 |
neuroblast (sensu Vertebrata) | 3.55e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.62e-25 | 75 |
central nervous system | 1.94e-24 | 73 |
regional part of nervous system | 1.62e-22 | 54 |
neural tube | 5.05e-21 | 52 |
neural rod | 5.05e-21 | 52 |
future spinal cord | 5.05e-21 | 52 |
neural keel | 5.05e-21 | 52 |
neurectoderm | 3.06e-20 | 64 |
neural plate | 3.06e-20 | 64 |
presumptive neural plate | 3.06e-20 | 64 |
brain | 3.61e-18 | 47 |
future brain | 3.61e-18 | 47 |
ectoderm-derived structure | 5.69e-18 | 95 |
ectoderm | 5.69e-18 | 95 |
presumptive ectoderm | 5.69e-18 | 95 |
regional part of brain | 2.41e-17 | 46 |
anterior neural tube | 4.38e-16 | 40 |
regional part of forebrain | 2.80e-15 | 39 |
forebrain | 2.80e-15 | 39 |
future forebrain | 2.80e-15 | 39 |
ecto-epithelium | 5.12e-15 | 73 |
pre-chordal neural plate | 1.36e-14 | 49 |
structure with developmental contribution from neural crest | 2.33e-13 | 92 |
gray matter | 1.13e-11 | 34 |
brain grey matter | 4.15e-09 | 29 |
regional part of telencephalon | 4.15e-09 | 29 |
telencephalon | 4.15e-09 | 29 |
diencephalon | 7.16e-08 | 10 |
future diencephalon | 7.16e-08 | 10 |
occipital lobe | 7.42e-08 | 10 |
visual cortex | 7.42e-08 | 10 |
neocortex | 7.42e-08 | 10 |