FFCP PHASE1:Mm9::chr10:106708883..106708906,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:106708883..106708906,+
|short_description=p3@Lin7a
|description=CAGE_peak_3_at_Lin7a_5end
|association_with_transcript=0bp_to_ENSMUST00000020057,ENSMUST00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=108030 | |EntrezGene=108030 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=39 | |||
|TSSclassifier=NA | |||
|UniProt=Q8JZS0,Q3TUM0,O88951 | |UniProt=Q8JZS0,Q3TUM0,O88951 | ||
|association_with_transcript=0bp_to_ENSMUST00000020057,ENSMUST00000105280,NM_001033223,NM_001039354,uc007gyx.1,uc007gyy.1_5end | |||
|cluster_id=chr10:106708883..106708906,+ | |||
|description=CAGE_peak_3_at_Lin7a_5end | |||
|id=chr10:106708883..106708906,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.00e-09!33;CL:0000047!1.00e-09!33;CL:0000031!1.00e-09!33;CL:0000404!1.00e-09!33;CL:0000117!5.95e-08!23;CL:0000337!5.95e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.58e-10,33;CL:0000047,3.58e-10,33;CL:0000031,3.58e-10,33;CL:0000404,3.58e-10,33;CL:0000117,1.29e-08,23;CL:0000337,1.29e-08,23;CL:0000393,4.32e-07,39;CL:0000211,4.32e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.05e-19!73;UBERON:0005743!1.05e-19!73;UBERON:0002346!2.83e-19!71;UBERON:0003075!2.83e-19!71;UBERON:0007284!2.83e-19!71;UBERON:0004121!1.33e-18!102;UBERON:0000924!1.33e-18!102;UBERON:0006601!1.33e-18!102;UBERON:0000073!1.35e-18!75;UBERON:0001016!1.35e-18!75;UBERON:0000033!1.47e-18!63;UBERON:0001049!1.43e-16!52;UBERON:0005068!1.43e-16!52;UBERON:0006241!1.43e-16!52;UBERON:0007135!1.43e-16!52;UBERON:0000955!1.33e-15!50;UBERON:0006238!1.33e-15!50;UBERON:0003056!2.07e-15!49;UBERON:0002616!6.29e-15!49;UBERON:0002020!1.02e-12!34;UBERON:0003080!3.79e-12!40;UBERON:0002780!1.58e-11!39;UBERON:0001890!1.58e-11!39;UBERON:0006240!1.58e-11!39;UBERON:0002791!4.06e-10!29;UBERON:0003528!4.06e-10!29;UBERON:0001893!4.06e-10!29;UBERON:0000153!5.81e-08!94;UBERON:0000468!6.59e-08!333;UBERON:0000025!6.97e-08!114;UBERON:0002021!7.15e-08!10;UBERON:0000411!7.15e-08!10;UBERON:0001950!7.15e-08!10;UBERON:0007811!1.63e-07!86;UBERON:0004111!3.91e-07!122;UBERON:0002619!6.08e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.17e-23,64;UBERON:0003075,4.17e-23,64;UBERON:0007284,4.17e-23,64;UBERON:0001017,3.55e-21,73;UBERON:0001016,5.76e-20,75;UBERON:0004121,4.34e-19,95;UBERON:0000924,4.34e-19,95;UBERON:0006601,4.34e-19,95;UBERON:0000073,1.62e-18,54;UBERON:0010371,3.54e-18,73;UBERON:0001049,3.10e-17,52;UBERON:0005068,3.10e-17,52;UBERON:0006241,3.10e-17,52;UBERON:0007135,3.10e-17,52;UBERON:0003056,1.17e-15,49;UBERON:0002020,2.18e-14,34;UBERON:0000955,3.62e-14,47;UBERON:0006238,3.62e-14,47;UBERON:0002616,2.06e-13,46;UBERON:0003080,8.45e-12,40;UBERON:0010314,2.45e-11,92;UBERON:0003528,3.05e-11,29;UBERON:0002791,3.05e-11,29;UBERON:0001893,3.05e-11,29;UBERON:0002780,4.29e-11,39;UBERON:0001890,4.29e-11,39;UBERON:0006240,4.29e-11,39;UBERON:0002021,2.45e-09,10;UBERON:0000411,2.45e-09,10;UBERON:0001950,2.45e-09,10;UBERON:0002619,1.49e-07,17;UBERON:0000956,7.43e-07,21;UBERON:0001869,7.43e-07,21;UBERON:0000203,7.43e-07,21 | |||
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| ||
|short_description=p3@Lin7a | |||
}} | }} |
Latest revision as of 13:52, 25 September 2015
Short description: | p3@Lin7a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lin7a_5end |
Coexpression cluster: | MCL_coexpression_mm9:39 |
Association with transcript: | 0bp_to_ENSMUST00000020057, ENSMUST00000105280, NM_001033223, NM_001039354, uc007gyx.1, uc007gyy.1_5end |
EntrezGene: | Lin7a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.58e-10 | 33 |
neuronal stem cell | 3.58e-10 | 33 |
neuroblast | 3.58e-10 | 33 |
electrically signaling cell | 3.58e-10 | 33 |
CNS neuron (sensu Vertebrata) | 1.29e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.29e-08 | 23 |
electrically responsive cell | 4.32e-07 | 39 |
electrically active cell | 4.32e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 4.17e-23 | 64 |
neural plate | 4.17e-23 | 64 |
presumptive neural plate | 4.17e-23 | 64 |
central nervous system | 3.55e-21 | 73 |
nervous system | 5.76e-20 | 75 |
ectoderm-derived structure | 4.34e-19 | 95 |
ectoderm | 4.34e-19 | 95 |
presumptive ectoderm | 4.34e-19 | 95 |
regional part of nervous system | 1.62e-18 | 54 |
ecto-epithelium | 3.54e-18 | 73 |
neural tube | 3.10e-17 | 52 |
neural rod | 3.10e-17 | 52 |
future spinal cord | 3.10e-17 | 52 |
neural keel | 3.10e-17 | 52 |
pre-chordal neural plate | 1.17e-15 | 49 |
gray matter | 2.18e-14 | 34 |
brain | 3.62e-14 | 47 |
future brain | 3.62e-14 | 47 |
regional part of brain | 2.06e-13 | 46 |
anterior neural tube | 8.45e-12 | 40 |
structure with developmental contribution from neural crest | 2.45e-11 | 92 |
brain grey matter | 3.05e-11 | 29 |
regional part of telencephalon | 3.05e-11 | 29 |
telencephalon | 3.05e-11 | 29 |
regional part of forebrain | 4.29e-11 | 39 |
forebrain | 4.29e-11 | 39 |
future forebrain | 4.29e-11 | 39 |
occipital lobe | 2.45e-09 | 10 |
visual cortex | 2.45e-09 | 10 |
neocortex | 2.45e-09 | 10 |
regional part of cerebral cortex | 1.49e-07 | 17 |
cerebral cortex | 7.43e-07 | 21 |
cerebral hemisphere | 7.43e-07 | 21 |
pallium | 7.43e-07 | 21 |