FFCP PHASE1:Mm9::chr2:120676105..120676123,-: Difference between revisions
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{{FFCP|EntrezGene=140810|HGNC=|MCL_coexpression_id=208|UniProt=A2AW13|association_with_transcript=2bp_to_ENSMUST00000143051_5end|description=CAGE_peak_1_at_Ttbk2_5end|id=chr2:120676105..120676123,-|ontology_enrichment_celltype=CL:0000540!8.26e-15!33;CL:0000047!8.26e-15!33;CL:0000031!8.26e-15!33;CL:0000404!8.26e-15!33;CL:0000117!2.26e-12!23;CL:0000337!2.26e-12!23;CL:0000393!8.34e-11!39;CL:0000211!8.34e-11!39;CL:0002319!1.50e-08!43;CL:0000221!2.31e-08!44;CL:0000133!2.31e-08!44|ontology_enrichment_celltype_v019_2=CL:0000540,8.16e-15,33;CL:0000047,8.16e-15,33;CL:0000031,8.16e-15,33;CL:0000404,8.16e-15,33;CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0000393,8.19e-11,39;CL:0000211,8.19e-11,39;CL:0002319,1.37e-08,43;CL:0000221,2.11e-08,44;CL:0000133,2.11e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.87e-23!73;UBERON:0005743!1.87e-23!73;UBERON:0000073!9.00e-23!75;UBERON:0001016!9.00e-23!75;UBERON:0000033!2.14e-20!63;UBERON:0001049!1.61e-19!52;UBERON:0005068!1.61e-19!52;UBERON:0006241!1.61e-19!52;UBERON:0007135!1.61e-19!52;UBERON:0002346!3.96e-19!71;UBERON:0003075!3.96e-19!71;UBERON:0007284!3.96e-19!71;UBERON:0000955!1.56e-18!50;UBERON:0006238!1.56e-18!50;UBERON:0004121!2.32e-18!102;UBERON:0000924!2.32e-18!102;UBERON:0006601!2.32e-18!102;UBERON:0002616!5.59e-18!49;UBERON:0003056!1.58e-17!49;UBERON:0002020!3.78e-15!34;UBERON:0003080!5.33e-15!40;UBERON:0002780!2.39e-14!39;UBERON:0001890!2.39e-14!39;UBERON:0006240!2.39e-14!39;UBERON:0007811!5.04e-13!86;UBERON:0002791!2.30e-12!29;UBERON:0003528!2.30e-12!29;UBERON:0001893!2.30e-12!29;UBERON:0000153!3.77e-12!94;UBERON:0000956!2.30e-08!21;UBERON:0001869!2.30e-08!21;UBERON:0000203!2.30e-08!21;UBERON:0004111!8.16e-08!122;UBERON:0000025!8.28e-08!114;UBERON:0002619!6.77e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.63e-23,73;UBERON:0002346,4.18e-23,64;UBERON:0003075,4.18e-23,64;UBERON:0007284,4.18e-23,64;UBERON:0001016,7.84e-23,75;UBERON:0004121,2.85e-21,95;UBERON:0000924,2.85e-21,95;UBERON:0006601,2.85e-21,95;UBERON:0000073,6.20e-21,54;UBERON:0001049,1.58e-19,52;UBERON:0005068,1.58e-19,52;UBERON:0006241,1.58e-19,52;UBERON:0007135,1.58e-19,52;UBERON:0010371,1.37e-18,73;UBERON:0003056,1.56e-17,49;UBERON:0000955,1.76e-16,47;UBERON:0006238,1.76e-16,47;UBERON:0010314,3.30e-16,92;UBERON:0002616,6.08e-16,46;UBERON:0002020,3.73e-15,34;UBERON:0003080,5.26e-15,40;UBERON:0002780,2.36e-14,39;UBERON:0001890,2.36e-14,39;UBERON:0006240,2.36e-14,39;UBERON:0003528,2.27e-12,29;UBERON:0002791,2.27e-12,29;UBERON:0001893,2.27e-12,29;UBERON:0000956,2.28e-08,21;UBERON:0001869,2.28e-08,21;UBERON:0000203,2.28e-08,21;UBERON:0004111,8.91e-08,122;UBERON:0000025,9.06e-08,114;UBERON:0002619,6.73e-07,17|phase1_expression=5.2849119544582,3.83872948403297,5.91499011206397,10.8887116070459,11.0197060588196,3.69334398206158,1.86890112476421,1.93684985162364,5.490760163915,7.2560003159818,0.171217968225505,0.478632953972018,0.684802919724823,2.27293046289393,0.999329285446988,0.202475267389826,2.79824751251259,1.26184866143295,1.64537320326887,2.54633791078818,22.1962987294292,1.09220046320974,3.39559725880616,0.47997726838022,1.37645568640302,2.8711598205751,0,1.07735616342945,1.33016393619462,0,1.33038306393183,5.08024538767705,0.61506478758457,0,2.02196133825892,0.831173226792462,3.26670970019791,1.25559489221072,0.7813353445238,1.57057123192139,2.35292595212406,2.73218193983378,1.45653105909346,2.39203954153597,2.12891555560981,4.22157529971868,1.56478268869608,2.39827672018491,1.97717564461025,3.4997381833371,1.25987779462826,0,1.67782606057736,5.07753499407941,1.00828139742739,0.514518872071894,1.71920063963254,3.6097046459421,12.7459370341547,11.1088105647127,13.3104594736298,1.0165335962074,1.77858959222228,0.449949858640699,0.988866362566974,0,2.39680088414724,2.68952813725088,10.5763404554647,7.69533848490637,7.99234853135252,23.4233807211119,16.7860091123226,8.57435594504678,6.61333750025831,10.1114066527102,44.0463523997555,44.5628809917305,50.8437625078166,11.3422207447967,11.618930737506,11.4600941522487,38.2480708631892,34.3285192119325,34.3796057497823,25.9273155216828,25.6269025438385,19.5719418116566,1.51452386666368,5.81901012822248,28.1168554040627,2.58127163094416,0.679971333707751,3.77792234146472,3.24888208723835,2.68816132258401,4.91555470461132,1.70430322578058,2.07828803682295,1.41335829804136,3.66192891419369,2.56652954828636,12.7402619853323,0,1.29894624606728,1.52015919285059,1.51657333504435,5.1382745873577,1.55362730188303,3.71105347662062,2.94925055502431,2.13125834818499,1.84492397804847,2.86373017049983,2.93971767839262,1.88499886994513,4.20231445148436,2.89198713839823,3.5384422077995,4.20593809863264,2.87093973998512,1.45462575940567,1.86391761218122,30.1564220921894,27.4375185925626,3.0654846625031,2.03685711660064,0.599902730993408,0.762421362438388,41.6417977545407,24.7050325522058,7.66491547888473,22.7709859451882,20.7129520437568,35.7395436642443,28.3922210368576,3.56437773476107,2.9857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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=140810 | |||
|HGNC= | |||
|MCL_coexpression_id=208 | |||
|TSSclassifier=NA | |||
|UniProt=A2AW13 | |||
|association_with_transcript=2bp_to_ENSMUST00000143051_5end | |||
|cluster_id=chr2:120676105..120676123,- | |||
|description=CAGE_peak_1_at_Ttbk2_5end | |||
|id=chr2:120676105..120676123,- | |||
|ontology_enrichment_celltype=CL:0000540!8.26e-15!33;CL:0000047!8.26e-15!33;CL:0000031!8.26e-15!33;CL:0000404!8.26e-15!33;CL:0000117!2.26e-12!23;CL:0000337!2.26e-12!23;CL:0000393!8.34e-11!39;CL:0000211!8.34e-11!39;CL:0002319!1.50e-08!43;CL:0000221!2.31e-08!44;CL:0000133!2.31e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.16e-15,33;CL:0000047,8.16e-15,33;CL:0000031,8.16e-15,33;CL:0000404,8.16e-15,33;CL:0000117,2.24e-12,23;CL:0000337,2.24e-12,23;CL:0000393,8.19e-11,39;CL:0000211,8.19e-11,39;CL:0002319,1.37e-08,43;CL:0000221,2.11e-08,44;CL:0000133,2.11e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.87e-23!73;UBERON:0005743!1.87e-23!73;UBERON:0000073!9.00e-23!75;UBERON:0001016!9.00e-23!75;UBERON:0000033!2.14e-20!63;UBERON:0001049!1.61e-19!52;UBERON:0005068!1.61e-19!52;UBERON:0006241!1.61e-19!52;UBERON:0007135!1.61e-19!52;UBERON:0002346!3.96e-19!71;UBERON:0003075!3.96e-19!71;UBERON:0007284!3.96e-19!71;UBERON:0000955!1.56e-18!50;UBERON:0006238!1.56e-18!50;UBERON:0004121!2.32e-18!102;UBERON:0000924!2.32e-18!102;UBERON:0006601!2.32e-18!102;UBERON:0002616!5.59e-18!49;UBERON:0003056!1.58e-17!49;UBERON:0002020!3.78e-15!34;UBERON:0003080!5.33e-15!40;UBERON:0002780!2.39e-14!39;UBERON:0001890!2.39e-14!39;UBERON:0006240!2.39e-14!39;UBERON:0007811!5.04e-13!86;UBERON:0002791!2.30e-12!29;UBERON:0003528!2.30e-12!29;UBERON:0001893!2.30e-12!29;UBERON:0000153!3.77e-12!94;UBERON:0000956!2.30e-08!21;UBERON:0001869!2.30e-08!21;UBERON:0000203!2.30e-08!21;UBERON:0004111!8.16e-08!122;UBERON:0000025!8.28e-08!114;UBERON:0002619!6.77e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.63e-23,73;UBERON:0002346,4.18e-23,64;UBERON:0003075,4.18e-23,64;UBERON:0007284,4.18e-23,64;UBERON:0001016,7.84e-23,75;UBERON:0004121,2.85e-21,95;UBERON:0000924,2.85e-21,95;UBERON:0006601,2.85e-21,95;UBERON:0000073,6.20e-21,54;UBERON:0001049,1.58e-19,52;UBERON:0005068,1.58e-19,52;UBERON:0006241,1.58e-19,52;UBERON:0007135,1.58e-19,52;UBERON:0010371,1.37e-18,73;UBERON:0003056,1.56e-17,49;UBERON:0000955,1.76e-16,47;UBERON:0006238,1.76e-16,47;UBERON:0010314,3.30e-16,92;UBERON:0002616,6.08e-16,46;UBERON:0002020,3.73e-15,34;UBERON:0003080,5.26e-15,40;UBERON:0002780,2.36e-14,39;UBERON:0001890,2.36e-14,39;UBERON:0006240,2.36e-14,39;UBERON:0003528,2.27e-12,29;UBERON:0002791,2.27e-12,29;UBERON:0001893,2.27e-12,29;UBERON:0000956,2.28e-08,21;UBERON:0001869,2.28e-08,21;UBERON:0000203,2.28e-08,21;UBERON:0004111,8.91e-08,122;UBERON:0000025,9.06e-08,114;UBERON:0002619,6.73e-07,17 | |||
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| |||
|short_description=p1@Ttbk2 | |||
}} |
Latest revision as of 14:40, 25 September 2015
Short description: | p1@Ttbk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ttbk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:208 |
Association with transcript: | 2bp_to_ENSMUST00000143051_5end |
EntrezGene: | Ttbk2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.16e-15 | 33 |
neuronal stem cell | 8.16e-15 | 33 |
neuroblast | 8.16e-15 | 33 |
electrically signaling cell | 8.16e-15 | 33 |
CNS neuron (sensu Vertebrata) | 2.24e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.24e-12 | 23 |
electrically responsive cell | 8.19e-11 | 39 |
electrically active cell | 8.19e-11 | 39 |
neural cell | 1.37e-08 | 43 |
ectodermal cell | 2.11e-08 | 44 |
neurectodermal cell | 2.11e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.63e-23 | 73 |
neurectoderm | 4.18e-23 | 64 |
neural plate | 4.18e-23 | 64 |
presumptive neural plate | 4.18e-23 | 64 |
nervous system | 7.84e-23 | 75 |
ectoderm-derived structure | 2.85e-21 | 95 |
ectoderm | 2.85e-21 | 95 |
presumptive ectoderm | 2.85e-21 | 95 |
regional part of nervous system | 6.20e-21 | 54 |
neural tube | 1.58e-19 | 52 |
neural rod | 1.58e-19 | 52 |
future spinal cord | 1.58e-19 | 52 |
neural keel | 1.58e-19 | 52 |
ecto-epithelium | 1.37e-18 | 73 |
pre-chordal neural plate | 1.56e-17 | 49 |
brain | 1.76e-16 | 47 |
future brain | 1.76e-16 | 47 |
structure with developmental contribution from neural crest | 3.30e-16 | 92 |
regional part of brain | 6.08e-16 | 46 |
gray matter | 3.73e-15 | 34 |
anterior neural tube | 5.26e-15 | 40 |
regional part of forebrain | 2.36e-14 | 39 |
forebrain | 2.36e-14 | 39 |
future forebrain | 2.36e-14 | 39 |
brain grey matter | 2.27e-12 | 29 |
regional part of telencephalon | 2.27e-12 | 29 |
telencephalon | 2.27e-12 | 29 |
cerebral cortex | 2.28e-08 | 21 |
cerebral hemisphere | 2.28e-08 | 21 |
pallium | 2.28e-08 | 21 |
anatomical conduit | 8.91e-08 | 122 |
tube | 9.06e-08 | 114 |
regional part of cerebral cortex | 6.73e-07 | 17 |