FFCP PHASE1:Mm9::chr3:143868471..143868494,-: Difference between revisions
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{{FFCP|EntrezGene=16911|HGNC=|MCL_coexpression_id=2365|UniProt=P61969,Q542S1|association_with_transcript=-252bp_to_NM_010723,uc008rpo.2,uc012cyw.1_5end|description=CAGE_peak_2_at_Lmo4_5end|id=chr3:143868471..143868494,-|ontology_enrichment_celltype=CL:0000221!1.46e-14!44;CL:0000133!1.46e-14!44;CL:0002319!3.92e-14!43;CL:0000055!2.10e-11!50;CL:0000540!8.40e-10!33;CL:0000047!8.40e-10!33;CL:0000031!8.40e-10!33;CL:0000404!8.40e-10!33;CL:0000393!3.91e-08!39;CL:0000211!3.91e-08!39|ontology_enrichment_celltype_v019_2=CL:0000221,1.46e-14,44;CL:0000133,1.46e-14,44;CL:0002319,3.92e-14,43;CL:0000540,8.40e-10,33;CL:0000047,8.40e-10,33;CL:0000031,8.40e-10,33;CL:0000404,8.40e-10,33;CL:0000393,3.91e-08,39;CL:0000211,3.91e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.71e-24!75;UBERON:0001016!5.71e-24!75;UBERON:0004121!1.30e-23!102;UBERON:0000924!1.30e-23!102;UBERON:0006601!1.30e-23!102;UBERON:0001017!2.07e-23!73;UBERON:0005743!2.07e-23!73;UBERON:0002780!3.47e-15!39;UBERON:0001890!3.47e-15!39;UBERON:0006240!3.47e-15!39;UBERON:0003080!6.65e-15!40;UBERON:0003056!7.13e-15!49;UBERON:0001049!1.53e-14!52;UBERON:0005068!1.53e-14!52;UBERON:0006241!1.53e-14!52;UBERON:0007135!1.53e-14!52;UBERON:0002346!1.72e-14!71;UBERON:0003075!1.72e-14!71;UBERON:0007284!1.72e-14!71;UBERON:0000033!7.08e-14!63;UBERON:0002020!1.69e-13!34;UBERON:0000955!8.70e-13!50;UBERON:0006238!8.70e-13!50;UBERON:0002616!1.08e-12!49;UBERON:0002791!7.33e-12!29;UBERON:0003528!7.33e-12!29;UBERON:0001893!7.33e-12!29;UBERON:0002619!2.59e-11!17;UBERON:0000956!1.03e-10!21;UBERON:0001869!1.03e-10!21;UBERON:0000203!1.03e-10!21;UBERON:0000153!5.55e-09!94;UBERON:0002021!4.14e-08!10;UBERON:0000411!4.14e-08!10;UBERON:0001950!4.14e-08!10;UBERON:0007811!1.92e-07!86;UBERON:0000010!8.38e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0004121,9.11e-26,95;UBERON:0000924,9.11e-26,95;UBERON:0006601,9.11e-26,95;UBERON:0001016,5.71e-24,75;UBERON:0001017,2.07e-23,73;UBERON:0010371,1.72e-18,73;UBERON:0002346,1.39e-16,64;UBERON:0003075,1.39e-16,64;UBERON:0007284,1.39e-16,64;UBERON:0002780,3.47e-15,39;UBERON:0001890,3.47e-15,39;UBERON:0006240,3.47e-15,39;UBERON:0003080,6.65e-15,40;UBERON:0003056,7.13e-15,49;UBERON:0001049,1.53e-14,52;UBERON:0005068,1.53e-14,52;UBERON:0006241,1.53e-14,52;UBERON:0007135,1.53e-14,52;UBERON:0000073,2.06e-14,54;UBERON:0002020,1.69e-13,34;UBERON:0000955,4.06e-13,47;UBERON:0006238,4.06e-13,47;UBERON:0002616,4.93e-13,46;UBERON:0010314,9.16e-13,92;UBERON:0003528,7.33e-12,29;UBERON:0002791,7.33e-12,29;UBERON:0001893,7.33e-12,29;UBERON:0002619,2.59e-11,17;UBERON:0000956,1.03e-10,21;UBERON:0001869,1.03e-10,21;UBERON:0000203,1.03e-10,21;UBERON:0002021,4.14e-08,10;UBERON:0000411,4.14e-08,10;UBERON:0001950,4.14e-08,10;UBERON:0000010,8.38e-07,11|phase1_expression=29.6275367143869,6.2815573375085,7.27998783023258,12.0985684522732,16.0286633582831,19.3061162698673,17.0537227634734,8.65126267058561,19.42884365693,19.1932911584035,9.07455231595176,6.38177271962691,9.92964233600993,8.13009742496676,5.3297561890506,5.4668322195253,3.49780939064073,20.9782339963228,18.7846774039862,17.3999757237192,19.559956734746,15.9858431433425,14.3659884026414,10.0795226359846,8.48814339948529,5.7423196411502,5.59990595006797,10.9890328669803,11.7814520062952,7.05684363327806,9.5344119581781,14.6057054895715,12.3012957516914,0,17.3310971850765,14.2961795008303,19.8044275574498,24.6933662134776,17.1893775795236,15.1821885752402,25.8821854733646,18.442228093878,15.0508209439658,13.09326906946,13.787262645854,21.1078764985934,264.448274389637,60.1749431610032,55.8002904145558,63.1897171991421,87.0715542509755,44.5632949531412,46.6435644840507,37.7188313845899,37.3064117048135,21.3525331909836,28.0802771139982,43.8321278435826,51.3883810583378,64.536899471188,67.186128771655,37.6117430596737,62.2506357277798,45.4449357227106,56.3653826663175,51.1545682761192,77.2968285137484,123.334076008219,18.0419925416751,32.1314133229424,24.1873705554089,49.417620301858,51.9041071236292,67.2474487690098,71.1173394955314,122.256098619133,25.3266526298594,26.4312789836339,23.962619187974,44.3137926773451,37.967372095,38.5475894212002,21.217907924105,25.8870800614573,32.5460267764606,50.3814881159972,33.3149733069901,49.7686520353553,34.5311441599319,35.3674901299756,25.7979394944493,10.3250865237766,15.6393406752783,9.17495425784289,8.4470934268197,7.16843019355737,29.3528838075361,15.6795896771813,12.7295142255406,14.1335829804136,56.4782113304489,28.2318250311499,66.2493623237279,49.7746692207332,20.3501578550541,24.0691872201344,22.7486000256652,18.954524033364,15.018397251536,16.1801931580659,24.8084017275574,23.1393763517227,23.0615497256059,27.7329658616826,17.6383060703557,13.6976584549346,9.14621380617183,30.0766662393416,44.2305275974937,14.3972496453194,21.2007857721978,24.2437626567611,35.4144346314432,15.2246014446005,12.3573557019938,16.0937944781413,18.092083800394,18.5969846607956,22.4914301919325,23.9665023047716,69.9975922312499,65.2146087465766,116.983767489402,96.1490119562043,31.5837827730531,35.3685953487712,17.3126918545538,22.8908825922571,22.9977710174644,32.8289295182899,40.7276986473263,31.9563925162527,29.1700650284666,28.031096117443,19.1182562615231,31.7722026306427,29.8908501345535,21.7310831420773,106.92172449469,65.2415976578976,64.7500136923332,61.374805079721,32.531528159395,35.521720985261,25.516984914585,14.52950147775,23.1730351813367,25.2200948972421,25.2905514462077,36.8683875113193,26.735970837845,20.5270750065557,37.6424129580484,26.3664070541521,26.2254091908543,24.1835302540424,26.8273401399619,9.92505410120941,16.1268652915211,18.7150909050169,18.4836885764551,22.0761981012252,19.5399602609035,17.0442151825672,79.279310608676,51.2464969648836,3.30418782983798,17.1892868331304,53.748639134879,46.9118077158086,32.0879978692012,33.6811486120982,26.9077433052293,19.403013863481,12.3377556001573,12.3524216043008,12.0640900224129,10.7436494902221,13.2575579241002,16.178749355776,10.1584883441106,17.5244320463843,46.8479715354112,22.5069569841166,33.8123207019241,27.900231914808,26.1835857676295,17.5339549725796,23.587228347348,20.9606410131035,19.3108435244891,14.8076596706161,15.7119892356189,15.3497497258807,13.9556886530374,13.0420025183215,9.94014594803664,11.576503668116,10.4396599230382,19.2756412092043,14.5921704097532,9.60964946158285,8.62609239164127,8.55924179637558,8.42501717409313,7.57736633841335,11.4814344654024,12.5435315554475,28.6367444758237,28.6132031773432,28.1929409244705,20.0299201214722,30.7444225257938,27.303519963016,45.9424226910007,22.2452358557891,31.5270288212382,29.4548037232871,24.556034373253,23.1047273749191,21.5856227332369,24.0117437245309,33.1740824666399,72.3394559478884,53.602305759075,54.3595390220323,19.266070798535,12.6588621519579,14.0984053023941,19.9452032491455,97.4920397996233,92.9244211426,95.8634119910955,97.2603007666887,86.0002881958041,80.9598878056061,101.607486120398,97.6134565423782,92.892627817433,29.5615611108062,29.9493579789447,22.0801348547396,12.8680697889325,21.1161757404845,30.5313818181915,22.0930378901033,24.1858845571801,20.7465587731488,31.5973025382427,28.5914687587853,10.5955600198971,13.0872142611902,16.3988794056972,22.7546465713787,17.9211634577498,15.470331487228,25.5329704315341,59.0600388422697,97.4070888884141,72.4459178406782,91.8622410266977,57.4347592678667,46.8964708716045,40.4938382322417,5.86679270159276,8.47328283455281,23.155481795771,29.3497530235834,25.9957726980408,29.7342719895808,35.9310755449441,27.4115302574252,10.7847909553045,23.3635880533242,18.9666677685616,22.9089423439177,15.0007567169466,7.34636982318295,12.1657862671712,12.5827995263587,8.32894306969891,10.216456019627,9.12119827109197,80.1923319132695,57.2568148381855,34.7676288786911,25.3812550931233,21.9542710815192,19.8709933009022,17.6672293764115,19.0102948168273,27.2226179663391,29.2929839639452,37.9016980983025,7.32800820289447,11.8118071374743,12.0784698033681,22.7507890362536,22.4738092851252,27.5398484549968,14.2002258761362,20.4420884205002,17.406651174668,9.18019659138823,9.50499020650956,24.6488674089979,28.1788049253328,23.0072544049213,13.9015280586241,26.4959509587873,21.6562676711579,11.658958603437,16.2458479892035,14.337235892637,14.098259231175,10.7884018096419,21.245818001266,12.6037512548832,16.3627663054197,24.2601510468276,10.6553257619551,19.5576207408657,5.87596157274275,58.3432573977215,17.2667877415087,26.5569855187534,16.0776284309299,26.0817494098389,150.788741978757,124.748139093445,143.223878359849,115.829044899645,152.088319389083,148.812597785771,164.030467556329,143.652463828526,128.23930174253,170.860902878101,48.4686913218105,66.6371538579722,32.0979178817772,39.6263948821319,27.8785506295216,31.0695529280524,31.3367886200277,32.9656091582231,32.0919209591815,31.0817570469471,34.7266640849628,33.5754887667216,23.7849428973501,29.6436455634545,19.3557530380417,22.8620971815875,24.9151300781439,17.3618298417335,27.6097553538215,24.5822196624444,30.8582327146874,25.0240886684666,21.4592570952589,24.4181979942312,26.1624077554619,21.4074957965942,22.3172126904783,14.2057644176435,17.7903389138079,28.0571135828869,21.3543032623513,17.829311309977,32.3292524104055,22.1559682895931,22.5700734847935,47.4640098082097,25.2646137121041,28.5778501884237,29.4584031386019,25.1474217796248,28.5197437813118|short_description=p2@Lmo4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16911 | |||
|HGNC= | |||
|MCL_coexpression_id=2365 | |||
|TSSclassifier=NA | |||
|UniProt=P61969,Q542S1 | |||
|association_with_transcript=-252bp_to_NM_010723,uc008rpo.2,uc012cyw.1_5end | |||
|cluster_id=chr3:143868471..143868494,- | |||
|description=CAGE_peak_2_at_Lmo4_5end | |||
|id=chr3:143868471..143868494,- | |||
|ontology_enrichment_celltype=CL:0000221!1.46e-14!44;CL:0000133!1.46e-14!44;CL:0002319!3.92e-14!43;CL:0000055!2.10e-11!50;CL:0000540!8.40e-10!33;CL:0000047!8.40e-10!33;CL:0000031!8.40e-10!33;CL:0000404!8.40e-10!33;CL:0000393!3.91e-08!39;CL:0000211!3.91e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.46e-14,44;CL:0000133,1.46e-14,44;CL:0002319,3.92e-14,43;CL:0000540,8.40e-10,33;CL:0000047,8.40e-10,33;CL:0000031,8.40e-10,33;CL:0000404,8.40e-10,33;CL:0000393,3.91e-08,39;CL:0000211,3.91e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.71e-24!75;UBERON:0001016!5.71e-24!75;UBERON:0004121!1.30e-23!102;UBERON:0000924!1.30e-23!102;UBERON:0006601!1.30e-23!102;UBERON:0001017!2.07e-23!73;UBERON:0005743!2.07e-23!73;UBERON:0002780!3.47e-15!39;UBERON:0001890!3.47e-15!39;UBERON:0006240!3.47e-15!39;UBERON:0003080!6.65e-15!40;UBERON:0003056!7.13e-15!49;UBERON:0001049!1.53e-14!52;UBERON:0005068!1.53e-14!52;UBERON:0006241!1.53e-14!52;UBERON:0007135!1.53e-14!52;UBERON:0002346!1.72e-14!71;UBERON:0003075!1.72e-14!71;UBERON:0007284!1.72e-14!71;UBERON:0000033!7.08e-14!63;UBERON:0002020!1.69e-13!34;UBERON:0000955!8.70e-13!50;UBERON:0006238!8.70e-13!50;UBERON:0002616!1.08e-12!49;UBERON:0002791!7.33e-12!29;UBERON:0003528!7.33e-12!29;UBERON:0001893!7.33e-12!29;UBERON:0002619!2.59e-11!17;UBERON:0000956!1.03e-10!21;UBERON:0001869!1.03e-10!21;UBERON:0000203!1.03e-10!21;UBERON:0000153!5.55e-09!94;UBERON:0002021!4.14e-08!10;UBERON:0000411!4.14e-08!10;UBERON:0001950!4.14e-08!10;UBERON:0007811!1.92e-07!86;UBERON:0000010!8.38e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,9.11e-26,95;UBERON:0000924,9.11e-26,95;UBERON:0006601,9.11e-26,95;UBERON:0001016,5.71e-24,75;UBERON:0001017,2.07e-23,73;UBERON:0010371,1.72e-18,73;UBERON:0002346,1.39e-16,64;UBERON:0003075,1.39e-16,64;UBERON:0007284,1.39e-16,64;UBERON:0002780,3.47e-15,39;UBERON:0001890,3.47e-15,39;UBERON:0006240,3.47e-15,39;UBERON:0003080,6.65e-15,40;UBERON:0003056,7.13e-15,49;UBERON:0001049,1.53e-14,52;UBERON:0005068,1.53e-14,52;UBERON:0006241,1.53e-14,52;UBERON:0007135,1.53e-14,52;UBERON:0000073,2.06e-14,54;UBERON:0002020,1.69e-13,34;UBERON:0000955,4.06e-13,47;UBERON:0006238,4.06e-13,47;UBERON:0002616,4.93e-13,46;UBERON:0010314,9.16e-13,92;UBERON:0003528,7.33e-12,29;UBERON:0002791,7.33e-12,29;UBERON:0001893,7.33e-12,29;UBERON:0002619,2.59e-11,17;UBERON:0000956,1.03e-10,21;UBERON:0001869,1.03e-10,21;UBERON:0000203,1.03e-10,21;UBERON:0002021,4.14e-08,10;UBERON:0000411,4.14e-08,10;UBERON:0001950,4.14e-08,10;UBERON:0000010,8.38e-07,11 | |||
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| |||
|short_description=p2@Lmo4 | |||
}} |
Latest revision as of 18:04, 1 October 2015
Short description: | p2@Lmo4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lmo4_5end |
Coexpression cluster: | MCL_coexpression_mm9:2365 |
Association with transcript: | -252bp_to_NM_010723, uc008rpo.2, uc012cyw.1_5end |
EntrezGene: | Lmo4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.46e-14 | 44 |
neurectodermal cell | 1.46e-14 | 44 |
neural cell | 3.92e-14 | 43 |
neuron | 8.40e-10 | 33 |
neuronal stem cell | 8.40e-10 | 33 |
neuroblast | 8.40e-10 | 33 |
electrically signaling cell | 8.40e-10 | 33 |
electrically responsive cell | 3.91e-08 | 39 |
electrically active cell | 3.91e-08 | 39 |