FFCP PHASE1:Mm9::chr4:48058196..48058205,+: Difference between revisions
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{{FFCP|EntrezGene=18124|HGNC=|MCL_coexpression_id=7|UniProt=B1AVI1|association_with_transcript=93bp_to_ENSMUST00000154186,uc008suu.1_5end|description=CAGE_peak_4_at_Nr4a3_5end|id=chr4:48058196..48058205,+|ontology_enrichment_celltype=CL:0000791!1.07e-09!9;CL:0000789!1.07e-09!9;CL:0002420!1.07e-09!9;CL:0002419!1.07e-09!9;CL:0000790!1.07e-09!9;CL:0000624!9.24e-09!8;CL:0000838!4.53e-08!12;CL:0000084!2.75e-07!11;CL:0000827!2.75e-07!11;CL:0000542!3.76e-07!13;CL:0000051!3.76e-07!13;CL:0000893!6.21e-07!6;CL:0002489!6.21e-07!6;CL:0000898!6.21e-07!6;CL:0000809!6.21e-07!6;CL:0000810!6.21e-07!6;CL:0000895!6.21e-07!6;CL:0000808!6.21e-07!6;CL:0000894!6.21e-07!6;CL:0000806!6.21e-07!6;CL:0000807!6.21e-07!6;CL:0000805!6.21e-07!6;CL:0002425!6.21e-07!6;CL:0002436!6.21e-07!6;CL:0002427!6.21e-07!6;CL:0002428!6.21e-07!6;CL:0002429!6.21e-07!6;CL:0002433!6.21e-07!6;CL:0002431!6.21e-07!6;CL:0002432!6.21e-07!6;CL:0000738!8.30e-07!17;CL:0002087!8.30e-07!17|ontology_enrichment_celltype_v019_2=CL:0000791,2.62e-26,9;CL:0000789,2.62e-26,9;CL:0002420,2.62e-26,9;CL:0002419,2.62e-26,9;CL:0000790,2.62e-26,9;CL:0000838,1.22e-23,12;CL:0000624,1.85e-23,8;CL:0000542,1.14e-21,13;CL:0000051,1.14e-21,13;CL:0000084,3.21e-21,11;CL:0000827,3.21e-21,11;CL:0000893,6.52e-18,6;CL:0002489,6.52e-18,6;CL:0000898,6.52e-18,6;CL:0000809,6.52e-18,6;CL:0000810,6.52e-18,6;CL:0000895,6.52e-18,6;CL:0000808,6.52e-18,6;CL:0000894,6.52e-18,6;CL:0000806,6.52e-18,6;CL:0000807,6.52e-18,6;CL:0000805,6.52e-18,6;CL:0002425,6.52e-18,6;CL:0002436,6.52e-18,6;CL:0002427,6.52e-18,6;CL:0002428,6.52e-18,6;CL:0002429,6.52e-18,6;CL:0002433,6.52e-18,6;CL:0002431,6.52e-18,6;CL:0002432,6.52e-18,6;CL:0000738,4.21e-16,17;CL:0002087,4.21e-16,17;CL:0002031,2.57e-10,25;CL:0000988,3.71e-09,32;CL:0002032,3.71e-09,32;CL:0000037,3.71e-09,32;CL:0000837,3.71e-09,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!2.98e-16!86;UBERON:0000153!4.95e-14!94;UBERON:0002020!1.61e-13!34;UBERON:0001017!6.74e-13!73;UBERON:0005743!6.74e-13!73;UBERON:0000955!8.90e-13!50;UBERON:0006238!8.90e-13!50;UBERON:0001049!9.72e-13!52;UBERON:0005068!9.72e-13!52;UBERON:0006241!9.72e-13!52;UBERON:0007135!9.72e-13!52;UBERON:0000073!9.83e-13!75;UBERON:0001016!9.83e-13!75;UBERON:0000956!3.61e-12!21;UBERON:0001869!3.61e-12!21;UBERON:0000203!3.61e-12!21;UBERON:0002616!4.54e-12!49;UBERON:0002791!5.77e-12!29;UBERON:0003528!5.77e-12!29;UBERON:0001893!5.77e-12!29;UBERON:0002346!2.93e-11!71;UBERON:0003075!2.93e-11!71;UBERON:0007284!2.93e-11!71;UBERON:0000033!4.46e-11!63;UBERON:0004121!5.79e-11!102;UBERON:0000924!5.79e-11!102;UBERON:0006601!5.79e-11!102;UBERON:0002780!1.39e-10!39;UBERON:0001890!1.39e-10!39;UBERON:0006240!1.39e-10!39;UBERON:0003080!4.54e-10!40;UBERON:0002021!1.13e-09!10;UBERON:0000411!1.13e-09!10;UBERON:0001950!1.13e-09!10;UBERON:0002619!1.26e-09!17;UBERON:0003056!2.46e-08!49;UBERON:0000064!2.96e-08!99|ontology_enrichment_uberon_v019_2=UBERON:0002021,7.96e-22,10;UBERON:0000411,7.96e-22,10;UBERON:0001950,7.96e-22,10;UBERON:0000956,3.02e-20,21;UBERON:0001869,3.02e-20,21;UBERON:0000203,3.02e-20,21;UBERON:0002619,1.40e-18,17;UBERON:0003528,2.64e-16,29;UBERON:0002791,2.64e-16,29;UBERON:0001893,2.64e-16,29;UBERON:0002020,1.80e-13,34;UBERON:0002780,2.29e-11,39;UBERON:0001890,2.29e-11,39;UBERON:0006240,2.29e-11,39;UBERON:0003080,5.22e-11,40;UBERON:0000955,1.87e-10,47;UBERON:0006238,1.87e-10,47;UBERON:0002616,3.40e-09,46;UBERON:0003056,1.87e-08,49;UBERON:0001049,8.37e-08,52;UBERON:0005068,8.37e-08,52;UBERON:0006241,8.37e-08,52;UBERON:0007135,8.37e-08,52;UBERON:0000073,2.07e-07,54|phase1_expression=0.640595388419176,0,0,0,0,0,0,3.61545305636414,87.0074302897301,101.584004423745,23.9705155515707,20.5812170207968,1.36960583944965,2.27293046289393,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0.782391344348039,0,0.219686182734472,0,0,0,2.18117387875057,12.3311564141929,7.05796978199174,0.257259436035947,0,0.515672092277442,0.404632921719196,2.11596391708813,0,0,0.889294796111139,0,0,0.7104801149461,0.599200221036809,0.768436610643109,0.518448061542388,1.08004750665353,0.630974884054146,0.571301968807607,0,0.122490799214954,0.191690942036473,0,0,0.255374676170375,0.768032666281217,0.263772575460388,0.0914876436024097,0,0,0,0.61119299110724,0.883885756421003,0.284743361598206,0.931997229126503,0.151452386666368,0,0.579728977403356,0,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,0.517875767294343,0.593768556259299,0,0.608930956624282,0,0.452167921657868,0.352766121407114,0.376999773989026,0,0.433798070759735,0,0,0,0,0,0.878342391034642,0.628340120440365,0,0.838705871541442,1.19980546198682,0.127070227073065,0,2.28750301409313,0.376963056338593,1.91206752211504,0.767146371990992,0.20778804455956,0.648965052271031,0.101839363850316,0,0,0.210441855886474,0,0.229902104433473,0.180062129805349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0.164167464079095,0,0.146199987425332,0,0.134206418760372,2.94405927989778,5.04232600658494,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0.238968797952552,0.222798674082394,0,0,0,0,2.57057053137446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0.164549020602121,0.304464949114599,0.23467170806371,0,0,0.32977250588296,0,0,0,0,0,0,0,0,0,0,0,0,2.03974115992626,2.37917468950219,1.93479963326193,0,0,0,0,0.209088296014469,0,0,0.330613822901344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26404448251271,0,0,0,0,0.198681354781265,0.360586348559907,0.147689527174577,0.201932899896295,0.15241361331,0.504130925684203,0.292373642219257,0.384847366561318,0.350630706544707,0,0.221985953374065,0,0,0.19318959403219,0,0,0,1.50471631210609,2.25900737046827,1.84130094602871,4.01026859407578,2.06223818812425,2.74033007908257,0.755393897389701,2.02506750069542,2.70192721934532,6.34399372577886,4.65984280576638,0.103787347584177,0,0.170733605754134,0,0.419226325255965,0,0.222246727801615,0,0,0,0,0.565879024158229,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0.342869252385415,0.177475806159338,0,0.145346416632329,0.188218760830661,0,0,0.263069711437843,0,0,0,0,0,0,0,0.749431733813838,0.233931608445408,0,0.765153328275374,0,0|short_description=p4@Nr4a3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18124 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=B1AVI1 | |||
|association_with_transcript=93bp_to_ENSMUST00000154186,uc008suu.1_5end | |||
|cluster_id=chr4:48058196..48058205,+ | |||
|description=CAGE_peak_4_at_Nr4a3_5end | |||
|id=chr4:48058196..48058205,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.07e-09!9;CL:0000789!1.07e-09!9;CL:0002420!1.07e-09!9;CL:0002419!1.07e-09!9;CL:0000790!1.07e-09!9;CL:0000624!9.24e-09!8;CL:0000838!4.53e-08!12;CL:0000084!2.75e-07!11;CL:0000827!2.75e-07!11;CL:0000542!3.76e-07!13;CL:0000051!3.76e-07!13;CL:0000893!6.21e-07!6;CL:0002489!6.21e-07!6;CL:0000898!6.21e-07!6;CL:0000809!6.21e-07!6;CL:0000810!6.21e-07!6;CL:0000895!6.21e-07!6;CL:0000808!6.21e-07!6;CL:0000894!6.21e-07!6;CL:0000806!6.21e-07!6;CL:0000807!6.21e-07!6;CL:0000805!6.21e-07!6;CL:0002425!6.21e-07!6;CL:0002436!6.21e-07!6;CL:0002427!6.21e-07!6;CL:0002428!6.21e-07!6;CL:0002429!6.21e-07!6;CL:0002433!6.21e-07!6;CL:0002431!6.21e-07!6;CL:0002432!6.21e-07!6;CL:0000738!8.30e-07!17;CL:0002087!8.30e-07!17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.62e-26,9;CL:0000789,2.62e-26,9;CL:0002420,2.62e-26,9;CL:0002419,2.62e-26,9;CL:0000790,2.62e-26,9;CL:0000838,1.22e-23,12;CL:0000624,1.85e-23,8;CL:0000542,1.14e-21,13;CL:0000051,1.14e-21,13;CL:0000084,3.21e-21,11;CL:0000827,3.21e-21,11;CL:0000893,6.52e-18,6;CL:0002489,6.52e-18,6;CL:0000898,6.52e-18,6;CL:0000809,6.52e-18,6;CL:0000810,6.52e-18,6;CL:0000895,6.52e-18,6;CL:0000808,6.52e-18,6;CL:0000894,6.52e-18,6;CL:0000806,6.52e-18,6;CL:0000807,6.52e-18,6;CL:0000805,6.52e-18,6;CL:0002425,6.52e-18,6;CL:0002436,6.52e-18,6;CL:0002427,6.52e-18,6;CL:0002428,6.52e-18,6;CL:0002429,6.52e-18,6;CL:0002433,6.52e-18,6;CL:0002431,6.52e-18,6;CL:0002432,6.52e-18,6;CL:0000738,4.21e-16,17;CL:0002087,4.21e-16,17;CL:0002031,2.57e-10,25;CL:0000988,3.71e-09,32;CL:0002032,3.71e-09,32;CL:0000037,3.71e-09,32;CL:0000837,3.71e-09,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!2.98e-16!86;UBERON:0000153!4.95e-14!94;UBERON:0002020!1.61e-13!34;UBERON:0001017!6.74e-13!73;UBERON:0005743!6.74e-13!73;UBERON:0000955!8.90e-13!50;UBERON:0006238!8.90e-13!50;UBERON:0001049!9.72e-13!52;UBERON:0005068!9.72e-13!52;UBERON:0006241!9.72e-13!52;UBERON:0007135!9.72e-13!52;UBERON:0000073!9.83e-13!75;UBERON:0001016!9.83e-13!75;UBERON:0000956!3.61e-12!21;UBERON:0001869!3.61e-12!21;UBERON:0000203!3.61e-12!21;UBERON:0002616!4.54e-12!49;UBERON:0002791!5.77e-12!29;UBERON:0003528!5.77e-12!29;UBERON:0001893!5.77e-12!29;UBERON:0002346!2.93e-11!71;UBERON:0003075!2.93e-11!71;UBERON:0007284!2.93e-11!71;UBERON:0000033!4.46e-11!63;UBERON:0004121!5.79e-11!102;UBERON:0000924!5.79e-11!102;UBERON:0006601!5.79e-11!102;UBERON:0002780!1.39e-10!39;UBERON:0001890!1.39e-10!39;UBERON:0006240!1.39e-10!39;UBERON:0003080!4.54e-10!40;UBERON:0002021!1.13e-09!10;UBERON:0000411!1.13e-09!10;UBERON:0001950!1.13e-09!10;UBERON:0002619!1.26e-09!17;UBERON:0003056!2.46e-08!49;UBERON:0000064!2.96e-08!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,7.96e-22,10;UBERON:0000411,7.96e-22,10;UBERON:0001950,7.96e-22,10;UBERON:0000956,3.02e-20,21;UBERON:0001869,3.02e-20,21;UBERON:0000203,3.02e-20,21;UBERON:0002619,1.40e-18,17;UBERON:0003528,2.64e-16,29;UBERON:0002791,2.64e-16,29;UBERON:0001893,2.64e-16,29;UBERON:0002020,1.80e-13,34;UBERON:0002780,2.29e-11,39;UBERON:0001890,2.29e-11,39;UBERON:0006240,2.29e-11,39;UBERON:0003080,5.22e-11,40;UBERON:0000955,1.87e-10,47;UBERON:0006238,1.87e-10,47;UBERON:0002616,3.40e-09,46;UBERON:0003056,1.87e-08,49;UBERON:0001049,8.37e-08,52;UBERON:0005068,8.37e-08,52;UBERON:0006241,8.37e-08,52;UBERON:0007135,8.37e-08,52;UBERON:0000073,2.07e-07,54 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,3.61545305636414,87.0074302897301,101.584004423745,23.9705155515707,20.5812170207968,1.36960583944965,2.27293046289393,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0.782391344348039,0,0.219686182734472,0,0,0,2.18117387875057,12.3311564141929,7.05796978199174,0.257259436035947,0,0.515672092277442,0.404632921719196,2.11596391708813,0,0,0.889294796111139,0,0,0.7104801149461,0.599200221036809,0.768436610643109,0.518448061542388,1.08004750665353,0.630974884054146,0.571301968807607,0,0.122490799214954,0.191690942036473,0,0,0.255374676170375,0.768032666281217,0.263772575460388,0.0914876436024097,0,0,0,0.61119299110724,0.883885756421003,0.284743361598206,0.931997229126503,0.151452386666368,0,0.579728977403356,0,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,0.517875767294343,0.593768556259299,0,0.608930956624282,0,0.452167921657868,0.352766121407114,0.376999773989026,0,0.433798070759735,0,0,0,0,0,0.878342391034642,0.628340120440365,0,0.838705871541442,1.19980546198682,0.127070227073065,0,2.28750301409313,0.376963056338593,1.91206752211504,0.767146371990992,0.20778804455956,0.648965052271031,0.101839363850316,0,0,0.210441855886474,0,0.229902104433473,0.180062129805349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0.164167464079095,0,0.146199987425332,0,0.134206418760372,2.94405927989778,5.04232600658494,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0.238968797952552,0.222798674082394,0,0,0,0,2.57057053137446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0.164549020602121,0.304464949114599,0.23467170806371,0,0,0.32977250588296,0,0,0,0,0,0,0,0,0,0,0,0,2.03974115992626,2.37917468950219,1.93479963326193,0,0,0,0,0.209088296014469,0,0,0.330613822901344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26404448251271,0,0,0,0,0.198681354781265,0.360586348559907,0.147689527174577,0.201932899896295,0.15241361331,0.504130925684203,0.292373642219257,0.384847366561318,0.350630706544707,0,0.221985953374065,0,0,0.19318959403219,0,0,0,1.50471631210609,2.25900737046827,1.84130094602871,4.01026859407578,2.06223818812425,2.74033007908257,0.755393897389701,2.02506750069542,2.70192721934532,6.34399372577886,4.65984280576638,0.103787347584177,0,0.170733605754134,0,0.419226325255965,0,0.222246727801615,0,0,0,0,0.565879024158229,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0.342869252385415,0.177475806159338,0,0.145346416632329,0.188218760830661,0,0,0.263069711437843,0,0,0,0,0,0,0,0.749431733813838,0.233931608445408,0,0.765153328275374,0,0 | |||
|short_description=p4@Nr4a3 | |||
}} |
Latest revision as of 01:42, 27 September 2015
Short description: | p4@Nr4a3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Nr4a3_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 93bp_to_ENSMUST00000154186, uc008suu.1_5end |
EntrezGene: | Nr4a3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 7.96e-22 | 10 |
visual cortex | 7.96e-22 | 10 |
neocortex | 7.96e-22 | 10 |
cerebral cortex | 3.02e-20 | 21 |
cerebral hemisphere | 3.02e-20 | 21 |
pallium | 3.02e-20 | 21 |
regional part of cerebral cortex | 1.40e-18 | 17 |
brain grey matter | 2.64e-16 | 29 |
regional part of telencephalon | 2.64e-16 | 29 |
telencephalon | 2.64e-16 | 29 |
gray matter | 1.80e-13 | 34 |
regional part of forebrain | 2.29e-11 | 39 |
forebrain | 2.29e-11 | 39 |
future forebrain | 2.29e-11 | 39 |
anterior neural tube | 5.22e-11 | 40 |
brain | 1.87e-10 | 47 |
future brain | 1.87e-10 | 47 |
regional part of brain | 3.40e-09 | 46 |
pre-chordal neural plate | 1.87e-08 | 49 |
neural tube | 8.37e-08 | 52 |
neural rod | 8.37e-08 | 52 |
future spinal cord | 8.37e-08 | 52 |
neural keel | 8.37e-08 | 52 |
regional part of nervous system | 2.07e-07 | 54 |