FFCP PHASE1:Mm9::chr4:8462751..8462864,+: Difference between revisions
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{{FFCP|EntrezGene=59021|HGNC=|UniProt=P53994,Q0PD65,Q3TEG7|association_with_transcript=0bp_to_ENSMUST00000060232,NM_021518,uc008rxw.1_5end|description=CAGE_peak_1_at_Rab2a_5end|id=chr4:8462751..8462864,+|ontology_enrichment_celltype=CL:0000393!1.22e-12!39;CL:0000211!1.22e-12!39;CL:0000540!5.02e-12!33;CL:0000047!5.02e-12!33;CL:0000031!5.02e-12!33;CL:0000404!5.02e-12!33;CL:0000117!9.63e-12!23;CL:0000337!9.63e-12!23;CL:0000055!1.05e-08!50;CL:0000221!7.26e-08!44;CL:0000133!7.26e-08!44;CL:0002319!1.19e-07!43;CL:0002321!7.60e-07!70;CL:0000220!7.60e-07!70|ontology_enrichment_celltype_v019_2=CL:0000393,1.22e-12,39;CL:0000211,1.22e-12,39;CL:0000540,5.02e-12,33;CL:0000047,5.02e-12,33;CL:0000031,5.02e-12,33;CL:0000404,5.02e-12,33;CL:0000117,9.63e-12,23;CL:0000337,9.63e-12,23;CL:0000221,7.26e-08,44;CL:0000133,7.26e-08,44;CL:0002319,1.19e-07,43;CL:0002321,7.60e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!5.66e-15!102;UBERON:0000924!5.66e-15!102;UBERON:0006601!5.66e-15!102;UBERON:0000073!1.06e-14!75;UBERON:0001016!1.06e-14!75;UBERON:0002020!2.13e-14!34;UBERON:0001017!1.44e-13!73;UBERON:0005743!1.44e-13!73;UBERON:0001049!1.62e-12!52;UBERON:0005068!1.62e-12!52;UBERON:0006241!1.62e-12!52;UBERON:0007135!1.62e-12!52;UBERON:0002346!7.92e-12!71;UBERON:0003075!7.92e-12!71;UBERON:0007284!7.92e-12!71;UBERON:0002791!8.76e-12!29;UBERON:0003528!8.76e-12!29;UBERON:0001893!8.76e-12!29;UBERON:0000033!1.87e-11!63;UBERON:0002616!3.07e-11!49;UBERON:0000955!3.35e-11!50;UBERON:0006238!3.35e-11!50;UBERON:0003080!7.84e-10!40;UBERON:0002780!1.62e-09!39;UBERON:0001890!1.62e-09!39;UBERON:0006240!1.62e-09!39;UBERON:0003056!7.47e-09!49;UBERON:0004111!1.31e-08!122;UBERON:0000956!1.03e-07!21;UBERON:0001869!1.03e-07!21;UBERON:0000203!1.03e-07!21;UBERON:0000025!2.13e-07!114;UBERON:0002619!9.52e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.06e-17,92;UBERON:0004121,7.93e-15,95;UBERON:0000924,7.93e-15,95;UBERON:0006601,7.93e-15,95;UBERON:0001016,1.06e-14,75;UBERON:0002020,2.13e-14,34;UBERON:0000073,1.09e-13,54;UBERON:0001017,1.44e-13,73;UBERON:0001049,1.62e-12,52;UBERON:0005068,1.62e-12,52;UBERON:0006241,1.62e-12,52;UBERON:0007135,1.62e-12,52;UBERON:0002346,6.93e-12,64;UBERON:0003075,6.93e-12,64;UBERON:0007284,6.93e-12,64;UBERON:0010371,8.20e-12,73;UBERON:0003528,8.76e-12,29;UBERON:0002791,8.76e-12,29;UBERON:0001893,8.76e-12,29;UBERON:0003080,7.84e-10,40;UBERON:0002616,1.17e-09,46;UBERON:0000955,1.25e-09,47;UBERON:0006238,1.25e-09,47;UBERON:0002780,1.62e-09,39;UBERON:0001890,1.62e-09,39;UBERON:0006240,1.62e-09,39;UBERON:0003056,7.47e-09,49;UBERON:0004111,1.31e-08,122;UBERON:0000956,1.03e-07,21;UBERON:0001869,1.03e-07,21;UBERON:0000203,1.03e-07,21;UBERON:0000025,2.13e-07,114;UBERON:0002619,9.52e-07,17|phase1_expression=141.251283146428,87.941802725119,94.6398417930235,61.0977706839797,59.105696133669,90.1511690166848,103.490399783818,109.238331631574,135.438750709903,93.3917460024754,95.5396262698318,70.1197277569007,105.11724817776,99.3969975504,44.3035983214831,48.5940641735582,54.5658264939954,71.4521804536408,74.1789085807047,85.3023200114041,130.541450381892,79.2341790583065,91.4199261986274,109.274824767897,114.245821971451,105.084449433049,85.7216372356559,94.1609286837335,84.5604216580864,98.7958108658928,104.656801029304,22.2260735710871,21.52726756546,15.8481681015439,84.0558213476209,98.244675406869,84.1177747800961,346.54419025016,332.848856767139,330.867006191441,356.468281746795,357.915834118226,378.6980753643,111.040993454459,111.109116616588,111.596425314302,73.5447863687157,71.5122512927865,102.154074971529,119.37995803161,94.3508481754943,70.4387565388361,101.005128846757,145.79779054428,126.371268477566,238.736756641359,189.971670679396,222.254671771578,165.89949790487,174.567023159771,157.190188069532,110.463317454537,96.9331327761142,83.6906737071701,74.1649771925231,90.9414547131008,64.414023761457,53.4063444396961,150.349937847293,149.586579671513,133.346025496776,184.244884940453,169.627039450839,169.037302916637,158.432563593145,147.075005857603,211.422491518826,230.603332581849,210.748163627566,186.750983425954,213.166209593614,195.342513958785,235.351268158164,202.031777001373,226.447003205233,207.123895587988,190.208565547602,200.379404262198,259.665116939488,212.204940779854,224.934843232502,142.83036357891,125.114725402226,112.258263860666,130.605059906981,135.752146790493,117.83286849054,115.551758707923,126.7755702462,131.795661292357,141.829323715117,141.15912515575,117.210410265057,127.9920065676,190.079134007846,185.966141258722,176.428031310159,116.924292832317,74.0562347230911,114.894215636174,92.8146498198827,95.2976947117002,138.138682856379,144.693734930518,137.343609934503,154.695573926831,140.653936640859,88.9286045057457,98.191771266436,141.222460004088,102.470464565623,114.915434993048,115.562891955236,142.584248144623,144.099334287657,79.9580582802891,142.939443535563,142.176947245438,135.711002514033,155.782264981016,145.9426922991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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=59021 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=P53994,Q0PD65,Q3TEG7 | |||
|association_with_transcript=0bp_to_ENSMUST00000060232,NM_021518,uc008rxw.1_5end | |||
|cluster_id=chr4:8462751..8462864,+ | |||
|description=CAGE_peak_1_at_Rab2a_5end | |||
|id=chr4:8462751..8462864,+ | |||
|ontology_enrichment_celltype=CL:0000393!1.22e-12!39;CL:0000211!1.22e-12!39;CL:0000540!5.02e-12!33;CL:0000047!5.02e-12!33;CL:0000031!5.02e-12!33;CL:0000404!5.02e-12!33;CL:0000117!9.63e-12!23;CL:0000337!9.63e-12!23;CL:0000055!1.05e-08!50;CL:0000221!7.26e-08!44;CL:0000133!7.26e-08!44;CL:0002319!1.19e-07!43;CL:0002321!7.60e-07!70;CL:0000220!7.60e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.22e-12,39;CL:0000211,1.22e-12,39;CL:0000540,5.02e-12,33;CL:0000047,5.02e-12,33;CL:0000031,5.02e-12,33;CL:0000404,5.02e-12,33;CL:0000117,9.63e-12,23;CL:0000337,9.63e-12,23;CL:0000221,7.26e-08,44;CL:0000133,7.26e-08,44;CL:0002319,1.19e-07,43;CL:0002321,7.60e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.66e-15!102;UBERON:0000924!5.66e-15!102;UBERON:0006601!5.66e-15!102;UBERON:0000073!1.06e-14!75;UBERON:0001016!1.06e-14!75;UBERON:0002020!2.13e-14!34;UBERON:0001017!1.44e-13!73;UBERON:0005743!1.44e-13!73;UBERON:0001049!1.62e-12!52;UBERON:0005068!1.62e-12!52;UBERON:0006241!1.62e-12!52;UBERON:0007135!1.62e-12!52;UBERON:0002346!7.92e-12!71;UBERON:0003075!7.92e-12!71;UBERON:0007284!7.92e-12!71;UBERON:0002791!8.76e-12!29;UBERON:0003528!8.76e-12!29;UBERON:0001893!8.76e-12!29;UBERON:0000033!1.87e-11!63;UBERON:0002616!3.07e-11!49;UBERON:0000955!3.35e-11!50;UBERON:0006238!3.35e-11!50;UBERON:0003080!7.84e-10!40;UBERON:0002780!1.62e-09!39;UBERON:0001890!1.62e-09!39;UBERON:0006240!1.62e-09!39;UBERON:0003056!7.47e-09!49;UBERON:0004111!1.31e-08!122;UBERON:0000956!1.03e-07!21;UBERON:0001869!1.03e-07!21;UBERON:0000203!1.03e-07!21;UBERON:0000025!2.13e-07!114;UBERON:0002619!9.52e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.06e-17,92;UBERON:0004121,7.93e-15,95;UBERON:0000924,7.93e-15,95;UBERON:0006601,7.93e-15,95;UBERON:0001016,1.06e-14,75;UBERON:0002020,2.13e-14,34;UBERON:0000073,1.09e-13,54;UBERON:0001017,1.44e-13,73;UBERON:0001049,1.62e-12,52;UBERON:0005068,1.62e-12,52;UBERON:0006241,1.62e-12,52;UBERON:0007135,1.62e-12,52;UBERON:0002346,6.93e-12,64;UBERON:0003075,6.93e-12,64;UBERON:0007284,6.93e-12,64;UBERON:0010371,8.20e-12,73;UBERON:0003528,8.76e-12,29;UBERON:0002791,8.76e-12,29;UBERON:0001893,8.76e-12,29;UBERON:0003080,7.84e-10,40;UBERON:0002616,1.17e-09,46;UBERON:0000955,1.25e-09,47;UBERON:0006238,1.25e-09,47;UBERON:0002780,1.62e-09,39;UBERON:0001890,1.62e-09,39;UBERON:0006240,1.62e-09,39;UBERON:0003056,7.47e-09,49;UBERON:0004111,1.31e-08,122;UBERON:0000956,1.03e-07,21;UBERON:0001869,1.03e-07,21;UBERON:0000203,1.03e-07,21;UBERON:0000025,2.13e-07,114;UBERON:0002619,9.52e-07,17 | |||
|phase1_expression=141.251283146428,87.941802725119,94.6398417930235,61.0977706839797,59.105696133669,90.1511690166848,103.490399783818,109.238331631574,135.438750709903,93.3917460024754,95.5396262698318,70.1197277569007,105.11724817776,99.3969975504,44.3035983214831,48.5940641735582,54.5658264939954,71.4521804536408,74.1789085807047,85.3023200114041,130.541450381892,79.2341790583065,91.4199261986274,109.274824767897,114.245821971451,105.084449433049,85.7216372356559,94.1609286837335,84.5604216580864,98.7958108658928,104.656801029304,22.2260735710871,21.52726756546,15.8481681015439,84.0558213476209,98.244675406869,84.1177747800961,346.54419025016,332.848856767139,330.867006191441,356.468281746795,357.915834118226,378.6980753643,111.040993454459,111.109116616588,111.596425314302,73.5447863687157,71.5122512927865,102.154074971529,119.37995803161,94.3508481754943,70.4387565388361,101.005128846757,145.79779054428,126.371268477566,238.736756641359,189.971670679396,222.254671771578,165.89949790487,174.567023159771,157.190188069532,110.463317454537,96.9331327761142,83.6906737071701,74.1649771925231,90.9414547131008,64.414023761457,53.4063444396961,150.349937847293,149.586579671513,133.346025496776,184.244884940453,169.627039450839,169.037302916637,158.432563593145,147.075005857603,211.422491518826,230.603332581849,210.748163627566,186.750983425954,213.166209593614,195.342513958785,235.351268158164,202.031777001373,226.447003205233,207.123895587988,190.208565547602,200.379404262198,259.665116939488,212.204940779854,224.934843232502,142.83036357891,125.114725402226,112.258263860666,130.605059906981,135.752146790493,117.83286849054,115.551758707923,126.7755702462,131.795661292357,141.829323715117,141.15912515575,117.210410265057,127.9920065676,190.079134007846,185.966141258722,176.428031310159,116.924292832317,74.0562347230911,114.894215636174,92.8146498198827,95.2976947117002,138.138682856379,144.693734930518,137.343609934503,154.695573926831,140.653936640859,88.9286045057457,98.191771266436,141.222460004088,102.470464565623,114.915434993048,115.562891955236,142.584248144623,144.099334287657,79.9580582802891,142.939443535563,142.176947245438,135.711002514033,155.782264981016,145.942692299142,176.418710366462,159.223077296125,180.023681960553,161.451310622778,164.025916961503,126.586329265943,112.961529313964,115.999746121057,129.632183226068,77.5517840057714,122.078017454174,117.040384373477,119.508920543722,130.698114869701,127.60126540371,140.365183390474,95.9789505441748,81.4847013286144,82.639357033337,92.1983890619092,102.364407043677,97.3165372289593,118.057484451014,121.411460480687,86.1818375324076,118.674028655937,139.482565656176,132.704354217742,116.611809937488,112.572508790926,133.966173726995,107.718854691271,118.648831743684,138.531867372866,139.752900794995,139.233895326402,153.312894528094,148.9266641717,148.079052599344,157.922040995327,169.884385388236,144.463975861511,171.650009594515,187.578634119201,156.415010816512,62.7795687669216,72.9883563991382,77.2103466937547,83.8374385416183,96.1351261462816,99.6316611639312,104.295302563244,105.384996866358,81.1444695241115,128.13578677528,132.956325455343,124.347795025719,130.62593836981,79.0961079615715,86.8874960496271,92.4015507900264,75.2981566783734,82.9444201546631,89.0391111817335,86.3481630064132,92.1274314046222,96.9277030884202,113.572820675166,104.507984769558,125.5989822731,134.132717182997,96.3471038033234,48.7187708690995,46.9775998320555,42.9486634655071,57.0036941101693,53.782506624789,72.5683677577046,79.4041339364237,95.6597837972709,90.6052663520669,76.1971494594979,110.898002405214,93.2992642612536,102.547024446527,101.180141226358,110.962009913574,136.163101152788,109.147053179799,86.2084725378317,91.4926012328264,84.7231796321493,102.848842069275,97.1218054814936,128.593073938289,105.773181695254,119.812397099987,123.577445709553,129.124291996002,127.786886580763,136.982658476691,141.743806902916,124.010495910666,138.677524991368,119.756547896254,173.555187776803,197.970538654231,122.295469251,187.838369840054,129.042861741249,126.111714407814,140.025208526319,113.988116623367,126.104049530635,141.821341925205,122.657642607493,142.62085866072,156.533960066823,122.74474287313,92.6868756409994,95.2650979619816,124.608523905486,85.7844639457184,165.931422924954,78.903706750369,99.4644502414031,147.866382528624,122.845587438401,157.099360599347,159.450256884792,138.50635093093,137.607988056502,185.513576908324,253.004660579997,232.05497230842,187.241783164583,88.7701193574359,77.0977755345217,96.6660027992481,105.162758549868,108.804978737263,126.373647822429,108.693986833912,131.885499931805,168.618328407601,168.483696113991,111.792879494323,114.962671807485,104.100108425997,115.194311963027,125.896070104462,96.7716377611104,191.729762278867,52.2864895241429,96.5890542067881,76.1149507489515,43.3247451110789,35.8138876629086,41.6376275235871,139.042355734974,128.475433233118,120.095777236044,123.15250972395,87.6250702219745,91.29044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| |||
|short_description=p1@Rab2a | |||
}} |
Latest revision as of 06:11, 27 September 2015
Short description: | p1@Rab2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab2a_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000060232, NM_021518, uc008rxw.1_5end |
EntrezGene: | Rab2a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.22e-12 | 39 |
electrically active cell | 1.22e-12 | 39 |
neuron | 5.02e-12 | 33 |
neuronal stem cell | 5.02e-12 | 33 |
neuroblast | 5.02e-12 | 33 |
electrically signaling cell | 5.02e-12 | 33 |
CNS neuron (sensu Vertebrata) | 9.63e-12 | 23 |
neuroblast (sensu Vertebrata) | 9.63e-12 | 23 |
ectodermal cell | 7.26e-08 | 44 |
neurectodermal cell | 7.26e-08 | 44 |
neural cell | 1.19e-07 | 43 |
embryonic cell | 7.60e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 6.06e-17 | 92 |
ectoderm-derived structure | 7.93e-15 | 95 |
ectoderm | 7.93e-15 | 95 |
presumptive ectoderm | 7.93e-15 | 95 |
nervous system | 1.06e-14 | 75 |
gray matter | 2.13e-14 | 34 |
regional part of nervous system | 1.09e-13 | 54 |
central nervous system | 1.44e-13 | 73 |
neural tube | 1.62e-12 | 52 |
neural rod | 1.62e-12 | 52 |
future spinal cord | 1.62e-12 | 52 |
neural keel | 1.62e-12 | 52 |
neurectoderm | 6.93e-12 | 64 |
neural plate | 6.93e-12 | 64 |
presumptive neural plate | 6.93e-12 | 64 |
ecto-epithelium | 8.20e-12 | 73 |
brain grey matter | 8.76e-12 | 29 |
regional part of telencephalon | 8.76e-12 | 29 |
telencephalon | 8.76e-12 | 29 |
anterior neural tube | 7.84e-10 | 40 |
regional part of brain | 1.17e-09 | 46 |
brain | 1.25e-09 | 47 |
future brain | 1.25e-09 | 47 |
regional part of forebrain | 1.62e-09 | 39 |
forebrain | 1.62e-09 | 39 |
future forebrain | 1.62e-09 | 39 |
pre-chordal neural plate | 7.47e-09 | 49 |
anatomical conduit | 1.31e-08 | 122 |
cerebral cortex | 1.03e-07 | 21 |
cerebral hemisphere | 1.03e-07 | 21 |
pallium | 1.03e-07 | 21 |
tube | 2.13e-07 | 114 |
regional part of cerebral cortex | 9.52e-07 | 17 |