FFCP PHASE1:Mm9::chr7:134967983..134968094,-: Difference between revisions
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{{FFCP|EntrezGene=56216|HGNC=|MCL_coexpression_id=1|UniProt=P61264|association_with_transcript=0bp_to_ENSMUST00000106267,NM_024414,uc009jwx.1_5end|description=CAGE_peak_1_at_Stx1b_5end|id=chr7:134967983..134968094,-|ontology_enrichment_celltype=CL:0000540!9.77e-14!33;CL:0000047!9.77e-14!33;CL:0000031!9.77e-14!33;CL:0000404!9.77e-14!33;CL:0000117!7.78e-13!23;CL:0000337!7.78e-13!23;CL:0000221!4.83e-12!44;CL:0000133!4.83e-12!44;CL:0002319!6.63e-12!43;CL:0000393!1.21e-09!39;CL:0000211!1.21e-09!39;CL:0000055!3.94e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.28e-14,33;CL:0000047,3.28e-14,33;CL:0000031,3.28e-14,33;CL:0000404,3.28e-14,33;CL:0000117,2.83e-13,23;CL:0000337,2.83e-13,23;CL:0000221,3.61e-12,44;CL:0000133,3.61e-12,44;CL:0002319,5.02e-12,43;CL:0000393,2.98e-09,39;CL:0000211,2.98e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.88e-29!73;UBERON:0005743!1.88e-29!73;UBERON:0000073!6.36e-29!75;UBERON:0001016!6.36e-29!75;UBERON:0004121!8.80e-29!102;UBERON:0000924!8.80e-29!102;UBERON:0006601!8.80e-29!102;UBERON:0002346!5.44e-27!71;UBERON:0003075!5.44e-27!71;UBERON:0007284!5.44e-27!71;UBERON:0000033!6.67e-25!63;UBERON:0001049!8.25e-24!52;UBERON:0005068!8.25e-24!52;UBERON:0006241!8.25e-24!52;UBERON:0007135!8.25e-24!52;UBERON:0000955!8.70e-23!50;UBERON:0006238!8.70e-23!50;UBERON:0002616!4.82e-22!49;UBERON:0003056!4.81e-21!49;UBERON:0002020!1.80e-18!34;UBERON:0003080!2.61e-18!40;UBERON:0002780!1.33e-17!39;UBERON:0001890!1.33e-17!39;UBERON:0006240!1.33e-17!39;UBERON:0002791!1.14e-15!29;UBERON:0003528!1.14e-15!29;UBERON:0001893!1.14e-15!29;UBERON:0000956!2.70e-11!21;UBERON:0001869!2.70e-11!21;UBERON:0000203!2.70e-11!21;UBERON:0000153!1.10e-10!94;UBERON:0007811!2.44e-10!86;UBERON:0002619!2.23e-09!17;UBERON:0000468!1.04e-08!333;UBERON:0002021!1.10e-07!10;UBERON:0000411!1.10e-07!10;UBERON:0001950!1.10e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.60e-30,73;UBERON:0001016,1.26e-29,75;UBERON:0004121,1.60e-28,95;UBERON:0000924,1.60e-28,95;UBERON:0006601,1.60e-28,95;UBERON:0002346,3.71e-28,64;UBERON:0003075,3.71e-28,64;UBERON:0007284,3.71e-28,64;UBERON:0000073,1.37e-25,54;UBERON:0010371,2.42e-25,73;UBERON:0001049,2.69e-24,52;UBERON:0005068,2.69e-24,52;UBERON:0006241,2.69e-24,52;UBERON:0007135,2.69e-24,52;UBERON:0003056,8.36e-22,49;UBERON:0000955,3.15e-21,47;UBERON:0006238,3.15e-21,47;UBERON:0002616,1.79e-20,46;UBERON:0002020,3.95e-19,34;UBERON:0003080,5.80e-19,40;UBERON:0010314,2.19e-18,92;UBERON:0002780,3.15e-18,39;UBERON:0001890,3.15e-18,39;UBERON:0006240,3.15e-18,39;UBERON:0003528,3.22e-16,29;UBERON:0002791,3.22e-16,29;UBERON:0001893,3.22e-16,29;UBERON:0000956,1.13e-11,21;UBERON:0001869,1.13e-11,21;UBERON:0000203,1.13e-11,21;UBERON:0002619,1.11e-09,17;UBERON:0002021,6.35e-08,10;UBERON:0000411,6.35e-08,10;UBERON:0001950,6.35e-08,10|phase1_expression=10.2495262147068,0.348975407639361,0,0,0,0.16787927191189,0.233612640595526,0,0,0.234064526321993,0,0,0,0,0.333109761815663,0,0,0,0.137114433605739,0,50.9409308004908,0,0,0,0.22940928106717,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.202753862439029,0.367093504323363,0.782391344348039,2.61630187656536,3.07560655828261,4.27745777963423,2.09979632438044,1.43752564364972,0,0,0,0,0.286533439938757,0.515672092277442,86.996078169627,98.3923221445981,93.8070477189145,1.35537812827653,0,0,0.988866362566974,0,8.38880309451533,11.5265491596466,48.1119801111336,51.1672506277108,37.8584930432488,240.232477883599,199.665161020259,47.1589576977573,55.4945277195589,51.4762520501612,226.838714858741,296.873061048061,299.993559449444,95.7494448921207,113.444678066988,95.8480601824438,296.213161940465,167.703257789441,209.639195949783,180.607322895358,187.21876025082,120.786840894795,1.66597625333005,2.87171928405785,1.15945795480671,0,0,1.07940638327563,0,0,13.0613310722529,0,0,0,9.29566570526091,0,0,0,0,0,0,9.47726201668198,0,4.30482203287992,3.99016251562112,6.39377504455497,5.30415643688935,4.6724018571313,7.52567725668511,1.50799909595611,0.741584903203122,1.15679485535929,0,2.26473589926373,1.10420759230197,2.42437626567611,1.86391761218122,308.590960050171,272.071272150678,0.766371165625774,0,0,0,347.664074058593,336.26294307169,105.047038366355,312.883776346098,354.933054774499,283.21510473468,272.727563216901,9.26738211037878,2.11491850037158,1.51633655060205,16.8353484709179,10.2795149940536,6.66716102857071,12.0641626969584,14.6183673300644,20.4789862445497,19.4732854832972,22.9569225171336,60.7952921236687,3.44908788692548,10.2117283290622,10.7330185740009,6.1374805079721,5.83899223373756,8.00979983000983,5.55611768301447,6.36909653819178,0,0,0,2.27838349789052,1.64168241986767,2.16074473753218,2.3674473558521,1.37734962223183,0.617068451549513,1.16266972375204,1.07309360559848,1.05088808130453,0.822799249567402,0.820837320395476,1.70244500046297,0.877199924551994,1.09775057645525,0.671032093801859,244.146630282952,73.6797024635677,0.330418782983798,0,5.1189180128456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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56216 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=P61264 | |||
|association_with_transcript=0bp_to_ENSMUST00000106267,NM_024414,uc009jwx.1_5end | |||
|cluster_id=chr7:134967983..134968094,- | |||
|description=CAGE_peak_1_at_Stx1b_5end | |||
|id=chr7:134967983..134968094,- | |||
|ontology_enrichment_celltype=CL:0000540!9.77e-14!33;CL:0000047!9.77e-14!33;CL:0000031!9.77e-14!33;CL:0000404!9.77e-14!33;CL:0000117!7.78e-13!23;CL:0000337!7.78e-13!23;CL:0000221!4.83e-12!44;CL:0000133!4.83e-12!44;CL:0002319!6.63e-12!43;CL:0000393!1.21e-09!39;CL:0000211!1.21e-09!39;CL:0000055!3.94e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.28e-14,33;CL:0000047,3.28e-14,33;CL:0000031,3.28e-14,33;CL:0000404,3.28e-14,33;CL:0000117,2.83e-13,23;CL:0000337,2.83e-13,23;CL:0000221,3.61e-12,44;CL:0000133,3.61e-12,44;CL:0002319,5.02e-12,43;CL:0000393,2.98e-09,39;CL:0000211,2.98e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.88e-29!73;UBERON:0005743!1.88e-29!73;UBERON:0000073!6.36e-29!75;UBERON:0001016!6.36e-29!75;UBERON:0004121!8.80e-29!102;UBERON:0000924!8.80e-29!102;UBERON:0006601!8.80e-29!102;UBERON:0002346!5.44e-27!71;UBERON:0003075!5.44e-27!71;UBERON:0007284!5.44e-27!71;UBERON:0000033!6.67e-25!63;UBERON:0001049!8.25e-24!52;UBERON:0005068!8.25e-24!52;UBERON:0006241!8.25e-24!52;UBERON:0007135!8.25e-24!52;UBERON:0000955!8.70e-23!50;UBERON:0006238!8.70e-23!50;UBERON:0002616!4.82e-22!49;UBERON:0003056!4.81e-21!49;UBERON:0002020!1.80e-18!34;UBERON:0003080!2.61e-18!40;UBERON:0002780!1.33e-17!39;UBERON:0001890!1.33e-17!39;UBERON:0006240!1.33e-17!39;UBERON:0002791!1.14e-15!29;UBERON:0003528!1.14e-15!29;UBERON:0001893!1.14e-15!29;UBERON:0000956!2.70e-11!21;UBERON:0001869!2.70e-11!21;UBERON:0000203!2.70e-11!21;UBERON:0000153!1.10e-10!94;UBERON:0007811!2.44e-10!86;UBERON:0002619!2.23e-09!17;UBERON:0000468!1.04e-08!333;UBERON:0002021!1.10e-07!10;UBERON:0000411!1.10e-07!10;UBERON:0001950!1.10e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.60e-30,73;UBERON:0001016,1.26e-29,75;UBERON:0004121,1.60e-28,95;UBERON:0000924,1.60e-28,95;UBERON:0006601,1.60e-28,95;UBERON:0002346,3.71e-28,64;UBERON:0003075,3.71e-28,64;UBERON:0007284,3.71e-28,64;UBERON:0000073,1.37e-25,54;UBERON:0010371,2.42e-25,73;UBERON:0001049,2.69e-24,52;UBERON:0005068,2.69e-24,52;UBERON:0006241,2.69e-24,52;UBERON:0007135,2.69e-24,52;UBERON:0003056,8.36e-22,49;UBERON:0000955,3.15e-21,47;UBERON:0006238,3.15e-21,47;UBERON:0002616,1.79e-20,46;UBERON:0002020,3.95e-19,34;UBERON:0003080,5.80e-19,40;UBERON:0010314,2.19e-18,92;UBERON:0002780,3.15e-18,39;UBERON:0001890,3.15e-18,39;UBERON:0006240,3.15e-18,39;UBERON:0003528,3.22e-16,29;UBERON:0002791,3.22e-16,29;UBERON:0001893,3.22e-16,29;UBERON:0000956,1.13e-11,21;UBERON:0001869,1.13e-11,21;UBERON:0000203,1.13e-11,21;UBERON:0002619,1.11e-09,17;UBERON:0002021,6.35e-08,10;UBERON:0000411,6.35e-08,10;UBERON:0001950,6.35e-08,10 | |||
|phase1_expression=10.2495262147068,0.348975407639361,0,0,0,0.16787927191189,0.233612640595526,0,0,0.234064526321993,0,0,0,0,0.333109761815663,0,0,0,0.137114433605739,0,50.9409308004908,0,0,0,0.22940928106717,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.202753862439029,0.367093504323363,0.782391344348039,2.61630187656536,3.07560655828261,4.27745777963423,2.09979632438044,1.43752564364972,0,0,0,0,0.286533439938757,0.515672092277442,86.996078169627,98.3923221445981,93.8070477189145,1.35537812827653,0,0,0.988866362566974,0,8.38880309451533,11.5265491596466,48.1119801111336,51.1672506277108,37.8584930432488,240.232477883599,199.665161020259,47.1589576977573,55.4945277195589,51.4762520501612,226.838714858741,296.873061048061,299.993559449444,95.7494448921207,113.444678066988,95.8480601824438,296.213161940465,167.703257789441,209.639195949783,180.607322895358,187.21876025082,120.786840894795,1.66597625333005,2.87171928405785,1.15945795480671,0,0,1.07940638327563,0,0,13.0613310722529,0,0,0,9.29566570526091,0,0,0,0,0,0,9.47726201668198,0,4.30482203287992,3.99016251562112,6.39377504455497,5.30415643688935,4.6724018571313,7.52567725668511,1.50799909595611,0.741584903203122,1.15679485535929,0,2.26473589926373,1.10420759230197,2.42437626567611,1.86391761218122,308.590960050171,272.071272150678,0.766371165625774,0,0,0,347.664074058593,336.26294307169,105.047038366355,312.883776346098,354.933054774499,283.21510473468,272.727563216901,9.26738211037878,2.11491850037158,1.51633655060205,16.8353484709179,10.2795149940536,6.66716102857071,12.0641626969584,14.6183673300644,20.4789862445497,19.4732854832972,22.9569225171336,60.7952921236687,3.44908788692548,10.2117283290622,10.7330185740009,6.1374805079721,5.83899223373756,8.00979983000983,5.55611768301447,6.36909653819178,0,0,0,2.27838349789052,1.64168241986767,2.16074473753218,2.3674473558521,1.37734962223183,0.617068451549513,1.16266972375204,1.07309360559848,1.05088808130453,0.822799249567402,0.820837320395476,1.70244500046297,0.877199924551994,1.09775057645525,0.671032093801859,244.146630282952,73.6797024635677,0.330418782983798,0,5.11891801284562,7.66381017139447,3.8660238396628,3.02525286935014,2.44615848229357,1.52180500890047,1.42358718463353,1.97638745668813,2.5133520880027,2.78539060857611,1.9496408711912,0,0.864552199498777,0.796565093017469,2.27601481143698,4.45569199177942,0,3.86937522906097,5.04276466635827,3.85747009396752,2.46622494784603,1.47610147979602,0.470996183524124,0.987177311374404,0.296452627087149,1.66845105716094,0.589676985339609,0,0.405720242777006,0,0.25462585178142,0,0,0,1.43768206527355,0.744281895337007,0,0,0.717589654087649,0,0,4.54779388249163,2.44447464663039,2.8856664581782,2.81628297946203,1.00503754465089,0.238043640886014,0.975668239288994,2.04925687338048,1.55025282754142,1.2756381492599,0.655453258862952,0.518054945597687,0.578596234326046,0,0,0.491764273019036,2.48343071674259,354.495702693045,368.279119272702,0,1.76729649043061,11.042787679569,12.1036010731958,14.6487910458303,4.54040716109849,6.68396022247182,9.90767857760913,8.09621403349789,13.7360253218317,11.8586333383957,347.990985684817,4.82596289708113,9.43747699436453,7.98146100832523,6.10389454998381,0,2.42780636154981,1.209294227859,1.32023555829129,2.36241514304618,1.53717573971964,2.06742634534577,1.81766864738753,3.20847640546249,2.21225730555071,0,0,9.19186935535228,9.36317688962813,9.18446654857557,7.07312215604255,8.51233121482913,12.1290795969408,11.8475294833527,14.0053876592716,0.469343416127421,1.48282449604674,3.08739757276947,1.15420377059036,2.58343082713449,1.62844897306021,1.43246812803764,1.64140899745061,1.7488850197791,342.851383417432,0,2.47664241555867,0.370389054739423,0,0,0,0.169978429993855,0.139951452323658,0.276399947608848,0,5.3777118908793,5.08298667817122,5.29226170026826,6.48173717644853,3.49380101993884,3.64133735239016,4.79390043206948,1.30877970992015,1.68499465279331,0.621339313086926,0,3.58839710505549,2.64733584731356,7.58359634541786,4.77891346867605,7.43406952159424,8.33236394384853,5.59878854828985,5.45268591013696,1.69108884578204,2.30424005006292,0,2.63542779877213,1.54066435747241,0.389762468933385,0.537080087002444,0.198681354781265,0.240390899039938,0,0.100966449948148,0.228620419965,0,0.292373642219257,0,0.233753804363138,1.58711268530648,2.66383144048878,0.358855426437903,1.67884616364078,2.12508553435409,2.25218970541418,3.11357761254351,1.92931541171159,1.00314420807073,355.793660848752,309.338558932823,305.926204176638,201.240076524458,334.320269648073,341.438041620145,290.934697599908,298.112636534434,302.699129201449,338.61524388569,9.3408612825759,16.3600198094423,15.3660245178721,12.6415492875513,22.0093820759381,22.7965950478018,17.5574914963276,18.3371200942616,22.1434254618353,14.1510438587727,14.7017993936339,16.4104917005886,18.7283014939765,16.8386150824806,16.8285924039947,18.0991602687568,20.5115256922394,19.0980128259068,13.5988347265091,15.1614887738429,16.1148548621145,20.76466932064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| |||
|short_description=p1@Stx1b | |||
}} |
Latest revision as of 23:05, 25 September 2015
Short description: | p1@Stx1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Stx1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000106267, NM_024414, uc009jwx.1_5end |
EntrezGene: | Stx1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.28e-14 | 33 |
neuronal stem cell | 3.28e-14 | 33 |
neuroblast | 3.28e-14 | 33 |
electrically signaling cell | 3.28e-14 | 33 |
CNS neuron (sensu Vertebrata) | 2.83e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.83e-13 | 23 |
ectodermal cell | 3.61e-12 | 44 |
neurectodermal cell | 3.61e-12 | 44 |
neural cell | 5.02e-12 | 43 |
electrically responsive cell | 2.98e-09 | 39 |
electrically active cell | 2.98e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.60e-30 | 73 |
nervous system | 1.26e-29 | 75 |
ectoderm-derived structure | 1.60e-28 | 95 |
ectoderm | 1.60e-28 | 95 |
presumptive ectoderm | 1.60e-28 | 95 |
neurectoderm | 3.71e-28 | 64 |
neural plate | 3.71e-28 | 64 |
presumptive neural plate | 3.71e-28 | 64 |
regional part of nervous system | 1.37e-25 | 54 |
ecto-epithelium | 2.42e-25 | 73 |
neural tube | 2.69e-24 | 52 |
neural rod | 2.69e-24 | 52 |
future spinal cord | 2.69e-24 | 52 |
neural keel | 2.69e-24 | 52 |
pre-chordal neural plate | 8.36e-22 | 49 |
brain | 3.15e-21 | 47 |
future brain | 3.15e-21 | 47 |
regional part of brain | 1.79e-20 | 46 |
gray matter | 3.95e-19 | 34 |
anterior neural tube | 5.80e-19 | 40 |
structure with developmental contribution from neural crest | 2.19e-18 | 92 |
regional part of forebrain | 3.15e-18 | 39 |
forebrain | 3.15e-18 | 39 |
future forebrain | 3.15e-18 | 39 |
brain grey matter | 3.22e-16 | 29 |
regional part of telencephalon | 3.22e-16 | 29 |
telencephalon | 3.22e-16 | 29 |
cerebral cortex | 1.13e-11 | 21 |
cerebral hemisphere | 1.13e-11 | 21 |
pallium | 1.13e-11 | 21 |
regional part of cerebral cortex | 1.11e-09 | 17 |
occipital lobe | 6.35e-08 | 10 |
visual cortex | 6.35e-08 | 10 |
neocortex | 6.35e-08 | 10 |