FFCP PHASE1:Mm9::chr8:87493555..87493578,+: Difference between revisions
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{{FFCP|EntrezGene=21672|HGNC=|MCL_coexpression_id=2690|UniProt=Q61171|association_with_transcript=8bp_to_NM_011563,uc009mom.1_5end|description=CAGE_peak_2_at_Prdx2_5end|id=chr8:87493555..87493578,+|ontology_enrichment_celltype=CL:0000221!1.31e-15!44;CL:0000133!1.31e-15!44;CL:0000540!4.16e-15!33;CL:0000047!4.16e-15!33;CL:0000031!4.16e-15!33;CL:0000404!4.16e-15!33;CL:0002319!4.57e-15!43;CL:0000117!5.57e-14!23;CL:0000337!5.57e-14!23;CL:0000055!6.56e-13!50;CL:0000393!1.58e-12!39;CL:0000211!1.58e-12!39;CL:0002321!5.82e-09!70;CL:0000220!5.82e-09!70|ontology_enrichment_celltype_v019_2=CL:0000221,1.31e-15,44;CL:0000133,1.31e-15,44;CL:0000540,4.16e-15,33;CL:0000047,4.16e-15,33;CL:0000031,4.16e-15,33;CL:0000404,4.16e-15,33;CL:0002319,4.57e-15,43;CL:0000117,5.57e-14,23;CL:0000337,5.57e-14,23;CL:0000393,1.58e-12,39;CL:0000211,1.58e-12,39;CL:0002321,5.80e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.60e-18!73;UBERON:0005743!1.60e-18!73;UBERON:0000073!1.64e-17!75;UBERON:0001016!1.64e-17!75;UBERON:0002346!1.17e-14!71;UBERON:0003075!1.17e-14!71;UBERON:0007284!1.17e-14!71;UBERON:0004121!8.95e-14!102;UBERON:0000924!8.95e-14!102;UBERON:0006601!8.95e-14!102;UBERON:0000033!1.23e-12!63;UBERON:0001049!1.49e-12!52;UBERON:0005068!1.49e-12!52;UBERON:0006241!1.49e-12!52;UBERON:0007135!1.49e-12!52;UBERON:0002020!7.32e-12!34;UBERON:0003056!9.64e-12!49;UBERON:0002616!1.53e-11!49;UBERON:0000955!1.93e-11!50;UBERON:0006238!1.93e-11!50;UBERON:0003080!2.08e-10!40;UBERON:0002780!2.96e-10!39;UBERON:0001890!2.96e-10!39;UBERON:0006240!2.96e-10!39;UBERON:0002791!2.06e-09!29;UBERON:0003528!2.06e-09!29;UBERON:0001893!2.06e-09!29;UBERON:0000025!2.95e-08!114;UBERON:0004111!5.22e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.60e-18,73;UBERON:0010314,7.37e-18,92;UBERON:0001016,1.64e-17,75;UBERON:0002346,7.30e-15,64;UBERON:0003075,7.30e-15,64;UBERON:0007284,7.30e-15,64;UBERON:0000073,5.68e-14,54;UBERON:0004121,1.29e-13,95;UBERON:0000924,1.29e-13,95;UBERON:0006601,1.29e-13,95;UBERON:0001049,1.49e-12,52;UBERON:0005068,1.49e-12,52;UBERON:0006241,1.49e-12,52;UBERON:0007135,1.49e-12,52;UBERON:0002020,7.32e-12,34;UBERON:0003056,9.64e-12,49;UBERON:0010371,1.29e-11,73;UBERON:0002616,2.05e-10,46;UBERON:0003080,2.08e-10,40;UBERON:0000955,2.56e-10,47;UBERON:0006238,2.56e-10,47;UBERON:0002780,2.96e-10,39;UBERON:0001890,2.96e-10,39;UBERON:0006240,2.96e-10,39;UBERON:0003528,2.06e-09,29;UBERON:0002791,2.06e-09,29;UBERON:0001893,2.06e-09,29;UBERON:0000025,2.95e-08,114;UBERON:0004111,5.22e-07,122|phase1_expression=53.649863780106,19.1936474201649,14.5599756604652,11.1911758183527,14.0250804384977,19.809754085603,26.3982283872944,6.84353614240354,1.97104211012333,0.70219357896598,3.76679530096111,4.86610169871552,9.41604014621631,5.42006494997784,49.6333545105337,95.9732767427775,227.357610391648,9.93705820878449,7.26706498110415,16.5511964201232,17.8590909317247,22.8369187762036,25.5975793356157,19.9990528491758,26.8408858848589,32.7312219545562,32.3071497119306,29.5195588779668,28.6935363379125,27.2192540140725,32.8161155769851,32.3865643464412,15.9916844771988,47.5445043046316,45.9274075404527,58.1821258754723,45.9381051590331,5.85944283031671,7.0320181007142,7.85285615960697,0,2.04913645487534,2.91306211818692,20.3952845120435,23.1139403180493,21.8420635072401,25.0365230191373,40.1166287740022,43.2781779986909,25.0814569805826,21.5579089303058,38.8131923785423,6.20795642413625,7.25362142011344,4.7053131879945,23.1533492432352,15.4728057566929,17.532851137433,78.7011032743835,79.3486468908049,79.2289254382724,46.4217008934711,27.5681386794453,31.496490104849,23.7327927016074,29.1296847127901,30.5592112728773,44.1851051119788,85.958688603728,104.899614083724,78.2408856227141,53.7023850679151,49.4745531731614,86.6009950449725,81.3728048944827,93.7603162342221,38.540558349786,38.4338887636415,37.4799941145234,77.8129097608144,75.477305971988,85.9507061418654,45.2276458382237,44.4582461925027,36.8243777142112,45.0781735774712,42.9962476013291,60.3934204473974,12.9491790599745,20.3287496687253,17.6817338108023,24.0918685554788,14.2793980078628,24.2866436237018,15.5946340187441,9.85659151614138,20.364440919104,24.2011058060842,22.6013824004496,21.2003744706204,49.9994140207216,16.6824420638613,5.09610479413291,0,27.9273442904466,24.0691872201344,27.2983200307983,15.7573754012303,4.66088190564909,16.6255195752604,26.3697696684527,25.2706346999077,26.5207821844467,30.8981413132876,22.4594430629196,24.002318943968,6.67426412882809,13.8815382643115,12.3845477272982,22.4855921426899,27.6051898075492,27.6378894287077,13.0474232852686,21.0802173848314,25.5524982312415,15.5828803677241,31.0321172470334,21.5964983157627,27.8283797290012,28.759802765726,15.5550204958333,51.1413213099358,28.1595398711488,26.8501230196847,24.9345653471472,26.76980840618,21.895463227818,23.6373244159177,21.4814344668623,12.2056276414155,45.2819141510209,60.9240576748703,37.0927987399019,35.5663370092288,32.7255560917887,35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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=21672 | |||
|HGNC= | |||
|MCL_coexpression_id=2690 | |||
|TSSclassifier=NA | |||
|UniProt=Q61171 | |||
|association_with_transcript=8bp_to_NM_011563,uc009mom.1_5end | |||
|cluster_id=chr8:87493555..87493578,+ | |||
|description=CAGE_peak_2_at_Prdx2_5end | |||
|id=chr8:87493555..87493578,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.31e-15!44;CL:0000133!1.31e-15!44;CL:0000540!4.16e-15!33;CL:0000047!4.16e-15!33;CL:0000031!4.16e-15!33;CL:0000404!4.16e-15!33;CL:0002319!4.57e-15!43;CL:0000117!5.57e-14!23;CL:0000337!5.57e-14!23;CL:0000055!6.56e-13!50;CL:0000393!1.58e-12!39;CL:0000211!1.58e-12!39;CL:0002321!5.82e-09!70;CL:0000220!5.82e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.31e-15,44;CL:0000133,1.31e-15,44;CL:0000540,4.16e-15,33;CL:0000047,4.16e-15,33;CL:0000031,4.16e-15,33;CL:0000404,4.16e-15,33;CL:0002319,4.57e-15,43;CL:0000117,5.57e-14,23;CL:0000337,5.57e-14,23;CL:0000393,1.58e-12,39;CL:0000211,1.58e-12,39;CL:0002321,5.80e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.60e-18!73;UBERON:0005743!1.60e-18!73;UBERON:0000073!1.64e-17!75;UBERON:0001016!1.64e-17!75;UBERON:0002346!1.17e-14!71;UBERON:0003075!1.17e-14!71;UBERON:0007284!1.17e-14!71;UBERON:0004121!8.95e-14!102;UBERON:0000924!8.95e-14!102;UBERON:0006601!8.95e-14!102;UBERON:0000033!1.23e-12!63;UBERON:0001049!1.49e-12!52;UBERON:0005068!1.49e-12!52;UBERON:0006241!1.49e-12!52;UBERON:0007135!1.49e-12!52;UBERON:0002020!7.32e-12!34;UBERON:0003056!9.64e-12!49;UBERON:0002616!1.53e-11!49;UBERON:0000955!1.93e-11!50;UBERON:0006238!1.93e-11!50;UBERON:0003080!2.08e-10!40;UBERON:0002780!2.96e-10!39;UBERON:0001890!2.96e-10!39;UBERON:0006240!2.96e-10!39;UBERON:0002791!2.06e-09!29;UBERON:0003528!2.06e-09!29;UBERON:0001893!2.06e-09!29;UBERON:0000025!2.95e-08!114;UBERON:0004111!5.22e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.60e-18,73;UBERON:0010314,7.37e-18,92;UBERON:0001016,1.64e-17,75;UBERON:0002346,7.30e-15,64;UBERON:0003075,7.30e-15,64;UBERON:0007284,7.30e-15,64;UBERON:0000073,5.68e-14,54;UBERON:0004121,1.29e-13,95;UBERON:0000924,1.29e-13,95;UBERON:0006601,1.29e-13,95;UBERON:0001049,1.49e-12,52;UBERON:0005068,1.49e-12,52;UBERON:0006241,1.49e-12,52;UBERON:0007135,1.49e-12,52;UBERON:0002020,7.32e-12,34;UBERON:0003056,9.64e-12,49;UBERON:0010371,1.29e-11,73;UBERON:0002616,2.05e-10,46;UBERON:0003080,2.08e-10,40;UBERON:0000955,2.56e-10,47;UBERON:0006238,2.56e-10,47;UBERON:0002780,2.96e-10,39;UBERON:0001890,2.96e-10,39;UBERON:0006240,2.96e-10,39;UBERON:0003528,2.06e-09,29;UBERON:0002791,2.06e-09,29;UBERON:0001893,2.06e-09,29;UBERON:0000025,2.95e-08,114;UBERON:0004111,5.22e-07,122 | |||
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| |||
|short_description=p2@Prdx2 | |||
}} |
Latest revision as of 22:12, 25 September 2015
Short description: | p2@Prdx2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Prdx2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2690 |
Association with transcript: | 8bp_to_NM_011563, uc009mom.1_5end |
EntrezGene: | Prdx2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.31e-15 | 44 |
neurectodermal cell | 1.31e-15 | 44 |
neuron | 4.16e-15 | 33 |
neuronal stem cell | 4.16e-15 | 33 |
neuroblast | 4.16e-15 | 33 |
electrically signaling cell | 4.16e-15 | 33 |
neural cell | 4.57e-15 | 43 |
CNS neuron (sensu Vertebrata) | 5.57e-14 | 23 |
neuroblast (sensu Vertebrata) | 5.57e-14 | 23 |
electrically responsive cell | 1.58e-12 | 39 |
electrically active cell | 1.58e-12 | 39 |
embryonic cell | 5.80e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.60e-18 | 73 |
structure with developmental contribution from neural crest | 7.37e-18 | 92 |
nervous system | 1.64e-17 | 75 |
neurectoderm | 7.30e-15 | 64 |
neural plate | 7.30e-15 | 64 |
presumptive neural plate | 7.30e-15 | 64 |
regional part of nervous system | 5.68e-14 | 54 |
ectoderm-derived structure | 1.29e-13 | 95 |
ectoderm | 1.29e-13 | 95 |
presumptive ectoderm | 1.29e-13 | 95 |
neural tube | 1.49e-12 | 52 |
neural rod | 1.49e-12 | 52 |
future spinal cord | 1.49e-12 | 52 |
neural keel | 1.49e-12 | 52 |
gray matter | 7.32e-12 | 34 |
pre-chordal neural plate | 9.64e-12 | 49 |
ecto-epithelium | 1.29e-11 | 73 |
regional part of brain | 2.05e-10 | 46 |
anterior neural tube | 2.08e-10 | 40 |
brain | 2.56e-10 | 47 |
future brain | 2.56e-10 | 47 |
regional part of forebrain | 2.96e-10 | 39 |
forebrain | 2.96e-10 | 39 |
future forebrain | 2.96e-10 | 39 |
brain grey matter | 2.06e-09 | 29 |
regional part of telencephalon | 2.06e-09 | 29 |
telencephalon | 2.06e-09 | 29 |
tube | 2.95e-08 | 114 |
anatomical conduit | 5.22e-07 | 122 |