FF:12191-129B4: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	CD8+ T Cells (pluriselect), donor090309, donation2
Species:	Human (Homo sapiens)
Library ID:	CNhs12178,RDhi10015
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	T cell, CD8+
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013691

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12178		CAGE		DRX008065		DRR008937
RDhi10015		RNA-Seq		DRX012348		DRR013796

Accession ID Hg19

Library id		BAM		CTSS
CNhs12178		DRZ000362		DRZ001747
RDhi10015		DRZ002997

Accession ID Hg38

Library id		BAM		CTSS
CNhs12178		DRZ011712		DRZ013097
RDhi10015

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.218
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.37
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.297
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.836
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.465
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.323
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.406
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.218
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.362
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.00458
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.555
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.155
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.305
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.225
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.629
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.00355
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.627
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.13
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.171
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.218
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.958
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.876
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12178

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.47488e-9
MA0003.1	MA0003.1	0.829
MA0004.1	MA0004.1	0.769
MA0006.1	MA0006.1	0.36
MA0007.1	MA0007.1	0.914
MA0009.1	MA0009.1	0.296
MA0014.1	MA0014.1	0.984
MA0017.1	MA0017.1	0.05
MA0018.2	MA0018.2	0.383
MA0019.1	MA0019.1	0.998
MA0024.1	MA0024.1	0.253
MA0025.1	MA0025.1	0.249
MA0027.1	MA0027.1	0.966
MA0028.1	MA0028.1	2.47524e-5
MA0029.1	MA0029.1	0.795
MA0030.1	MA0030.1	0.261
MA0031.1	MA0031.1	0.011
MA0035.2	MA0035.2	0.0819
MA0038.1	MA0038.1	0.0264
MA0039.2	MA0039.2	0.757
MA0040.1	MA0040.1	0.889
MA0041.1	MA0041.1	0.651
MA0042.1	MA0042.1	0.966
MA0043.1	MA0043.1	0.0248
MA0046.1	MA0046.1	0.947
MA0047.2	MA0047.2	0.0525
MA0048.1	MA0048.1	0.416
MA0050.1	MA0050.1	9.70763e-6
MA0051.1	MA0051.1	0.016
MA0052.1	MA0052.1	0.00237
MA0055.1	MA0055.1	0.921
MA0057.1	MA0057.1	0.948
MA0058.1	MA0058.1	0.793
MA0059.1	MA0059.1	0.298
MA0060.1	MA0060.1	0.0516
MA0061.1	MA0061.1	0.00831
MA0062.2	MA0062.2	2.41851e-16
MA0065.2	MA0065.2	0.0148
MA0066.1	MA0066.1	0.0996
MA0067.1	MA0067.1	0.463
MA0068.1	MA0068.1	0.874
MA0069.1	MA0069.1	0.997
MA0070.1	MA0070.1	0.494
MA0071.1	MA0071.1	0.383
MA0072.1	MA0072.1	0.346
MA0073.1	MA0073.1	0.901
MA0074.1	MA0074.1	0.635
MA0076.1	MA0076.1	2.21013e-8
MA0077.1	MA0077.1	0.238
MA0078.1	MA0078.1	0.493
MA0079.2	MA0079.2	0.38
MA0080.2	MA0080.2	1.64526e-12
MA0081.1	MA0081.1	0.019
MA0083.1	MA0083.1	0.00725
MA0084.1	MA0084.1	0.487
MA0087.1	MA0087.1	0.86
MA0088.1	MA0088.1	0.0593
MA0090.1	MA0090.1	7.13086e-4
MA0091.1	MA0091.1	0.889
MA0092.1	MA0092.1	0.846
MA0093.1	MA0093.1	0.894
MA0099.2	MA0099.2	0.0286
MA0100.1	MA0100.1	0.401
MA0101.1	MA0101.1	0.871
MA0102.2	MA0102.2	0.581
MA0103.1	MA0103.1	0.0799
MA0104.2	MA0104.2	0.0765
MA0105.1	MA0105.1	5.25427e-6
MA0106.1	MA0106.1	0.571
MA0107.1	MA0107.1	0.908
MA0108.2	MA0108.2	1.72104e-12
MA0111.1	MA0111.1	0.195
MA0112.2	MA0112.2	0.0921
MA0113.1	MA0113.1	0.342
MA0114.1	MA0114.1	0.123
MA0115.1	MA0115.1	0.649
MA0116.1	MA0116.1	2.27644e-5
MA0117.1	MA0117.1	0.796
MA0119.1	MA0119.1	0.938
MA0122.1	MA0122.1	0.26
MA0124.1	MA0124.1	0.596
MA0125.1	MA0125.1	0.54
MA0131.1	MA0131.1	0.405
MA0135.1	MA0135.1	0.38
MA0136.1	MA0136.1	1.4093e-23
MA0137.2	MA0137.2	0.0445
MA0138.2	MA0138.2	0.987
MA0139.1	MA0139.1	0.0019
MA0140.1	MA0140.1	0.12
MA0141.1	MA0141.1	0.659
MA0142.1	MA0142.1	0.437
MA0143.1	MA0143.1	0.302
MA0144.1	MA0144.1	0.262
MA0145.1	MA0145.1	0.729
MA0146.1	MA0146.1	0.419
MA0147.1	MA0147.1	0.084
MA0148.1	MA0148.1	0.113
MA0149.1	MA0149.1	0.107
MA0150.1	MA0150.1	0.314
MA0152.1	MA0152.1	0.0579
MA0153.1	MA0153.1	0.34
MA0154.1	MA0154.1	0.00434
MA0155.1	MA0155.1	0.904
MA0156.1	MA0156.1	1.51027e-20
MA0157.1	MA0157.1	0.00447
MA0159.1	MA0159.1	0.045
MA0160.1	MA0160.1	0.323
MA0162.1	MA0162.1	0.835
MA0163.1	MA0163.1	2.89845e-12
MA0164.1	MA0164.1	0.613
MA0258.1	MA0258.1	0.124
MA0259.1	MA0259.1	0.258

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12178

Novel motif	Logo	P-value
1	1	0.201
10	10	0.0147
100	100	0.982
101	101	0.158
102	102	0.542
103	103	0.256
104	104	0.441
105	105	0.0916
106	106	0.843
107	107	0.265
108	108	0.858
109	109	0.0379
11	11	0.056
110	110	0.424
111	111	0.304
112	112	0.374
113	113	0.298
114	114	0.193
115	115	0.183
116	116	0.953
117	117	0.00554
118	118	0.385
119	119	0.578
12	12	0.738
120	120	0.55
121	121	0.969
122	122	0.429
123	123	0.0244
124	124	0.0224
125	125	0.625
126	126	0.364
127	127	0.654
128	128	0.796
129	129	0.139
13	13	0.501
130	130	1
131	131	0.821
132	132	0.961
133	133	0.979
134	134	0.954
135	135	0.358
136	136	0.739
137	137	0.268
138	138	0.378
139	139	0.0153
14	14	0.363
140	140	0.103
141	141	0.587
142	142	0.314
143	143	2.67382e-5
144	144	0.674
145	145	0.241
146	146	0.12
147	147	0.0327
148	148	0.12
149	149	0.994
15	15	0.0508
150	150	0.539
151	151	0.319
152	152	0.238
153	153	0.547
154	154	0.96
155	155	0.0145
156	156	0.323
157	157	0.574
158	158	0.157
159	159	0.208
16	16	0.628
160	160	0.61
161	161	0.229
162	162	0.527
163	163	0.607
164	164	0.432
165	165	0.639
166	166	0.56
167	167	0.183
168	168	0.121
169	169	0.672
17	17	0.848
18	18	0.618
19	19	0.551
2	2	0.668
20	20	0.921
21	21	0.425
22	22	0.891
23	23	0.84
24	24	0.789
25	25	0.0625
26	26	0.398
27	27	0.058
28	28	0.524
29	29	0.0478
3	3	0.0461
30	30	0.488
31	31	0.733
32	32	0.334
33	33	0.575
34	34	0.88
35	35	0.0663
36	36	0.0255
37	37	0.148
38	38	0.48
39	39	0.623
4	4	0.563
40	40	0.58
41	41	0.168
42	42	0.042
43	43	0.188
44	44	0.66
45	45	0.835
46	46	0.129
47	47	0.0526
48	48	0.126
49	49	0.0958
5	5	0.0999
50	50	0.513
51	51	0.434
52	52	0.28
53	53	0.183
54	54	0.395
55	55	0.293
56	56	0.501
57	57	0.342
58	58	0.0452
59	59	0.388
6	6	0.92
60	60	0.455
61	61	0.101
62	62	0.0212
63	63	0.605
64	64	0.178
65	65	0.623
66	66	0.891
67	67	0.956
68	68	0.664
69	69	0.871
7	7	0.149
70	70	0.00472
71	71	0.0974
72	72	0.0587
73	73	0.687
74	74	0.374
75	75	0.0246
76	76	0.342
77	77	0.604
78	78	0.11
79	79	0.273
8	8	0.649
80	80	0.00357
81	81	0.274
82	82	0.095
83	83	0.955
84	84	0.585
85	85	0.855
86	86	0.208
87	87	0.714
88	88	0.83
89	89	0.943
9	9	0.559
90	90	0.0089
91	91	0.865
92	92	0.268
93	93	0.277
94	94	0.0472
95	95	0.0171
96	96	0.0867
97	97	0.386
98	98	0.13
99	99	0.161

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12178

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007958!RNA-Seq@DRS012108
+|DRA_sample_Accession=RNA-Seq@SAMD00013691
+|accession_numbers=CAGE;DRX008065;DRR008937;DRZ000362;DRZ001747;DRZ011712;DRZ013097!RNA-Seq;DRX012348;DRR013796;DRZ002997;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:27763807..27763822,-!p1@EOMES!1.93!84.64!EOMES;;chr2:192015701..192015743,-!p1@STAT4!1.92!110.68!STAT4;;chr2:68592406..68592424,+!p1@PLEK!1.89!76.18!PLEK;;chr5:133451294..133451310,+!p2@TCF7!1.85!69.67!TCF7;;chr17:45810594..45810608,+!p1@TBX21!1.82!65.11!TBX21;;chr7:50343634..50343717,+!p2@IKZF1!1.80!62.50!IKZF1;;chr4:109087445..109087463,-!p1@LEF1!1.76!55.99!LEF1;;chr2:192015750..192015793,-!p2@STAT4!1.70!65.76!STAT4;;chr3:63953435..63953499,+!p1@ATXN7!1.70!48.83!ATXN7;;chr1:25256756..25256774,-!p1@RUNX3!1.63!76.18!RUNX3;;chr2:68592394..68592405,+!p2@PLEK!1.62!41.02!PLEK;;chr9:117150254..117150271,-!p1@AKNA!1.61!104.17!AKNA;;chr5:133450365..133450444,+!p1@TCF7!1.60!168.63!TCF7;;chr17:37934365..37934387,-!p2@IKZF3!1.55!34.51!IKZF3;;chr14:75988771..75988826,+!p1@BATF!1.53!42.97!BATF;;chr2:231090433..231090469,+!p1@SP140!1.53!32.55!SP140;;chr20:50159198..50159299,-!p1@NFATC2!1.45!39.07!NFATC2;;chr19:16435625..16435682,+!p1@KLF2!1.41!767.63!KLF2;;chr5:133451347..133451358,+!p3@TCF7!1.40!24.09!TCF7;;chr19:19779619..19779670,+!p1@ZNF101!1.38!62.50!ZNF101;;chr3:18486354..18486377,-!p2@SATB1!1.37!28.00!SATB1;;chr4:109090075..109090095,-!p2@LEF1!1.31!19.53!LEF1;;chr20:56195474..56195506,-!p1@ZBP1!1.31!19.53!ZBP1;;chr3:71355163..71355209,-!p5@FOXP1!1.28!24.74!FOXP1;;chr4:57522166..57522260,-!p2@HOPX!1.27!20.18!HOPX;;chr7:50343895..50343936,+!p5@IKZF1!1.27!17.58!IKZF1;;chr3:71542615..71542644,-!p12@FOXP1!1.25!16.93!FOXP1;;chr17:38020392..38020477,-!p1@IKZF3!1.25!16.93!IKZF3;;chr15:60884706..60884743,-!p1@RORA!1.24!82.69!RORA;;chr8:67525443..67525459,-!p2@MYBL1!1.22!23.44!MYBL1;;chr4:57522598..57522664,-!p3@HOPX!1.22!15.63!HOPX;;chr2:231090471..231090504,+!p2@SP140!1.20!14.97!SP140;;chr4:109089901..109089930,-!p3@LEF1!1.20!14.97!LEF1;;chr17:37934204..37934241,-!p3@IKZF3!1.19!14.32!IKZF3;;chr17:38020516..38020544,-!p5@IKZF3!1.19!14.32!IKZF3;;chr2:97202991..97203043,+!p3@ARID5A!1.17!13.67!ARID5A;;chr1:26697243..26697258,-!p1@ZNF683!1.17!13.67!ZNF683;;chr11:128392085..128392232,-!p1@ETS1!1.16!446.64!ETS1;;chr4:109088089..109088101,-!p11@LEF1!1.15!13.02!LEF1;;chr3:71542684..71542720,-!p18@FOXP1!1.13!12.37!FOXP1;;chr17:37934280..37934299,-!p6@IKZF3!1.13!12.37!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!1.12!76.83!ELF1;;chr17:38020557..38020572,-!p4@IKZF3!1.10!11.72!IKZF3;;chrX:106960285..106960299,-!p1@TSC22D3!1.09!301.45!TSC22D3;;chr6:91006518..91006570,-!p1@BACH2!1.09!26.04!BACH2;;chr11:128392273..128392308,-!p2@ETS1!1.08!46.88!ETS1;;chr1:25291475..25291511,-!p2@RUNX3!1.08!11.07!RUNX3;;chr20:52226313..52226350,-!p3@ZNF217!1.08!11.07!ZNF217;;chr4:57522674..57522699,-!p5@HOPX!1.08!11.07!HOPX;;chr6:106546808..106546833,+!p3@PRDM1!1.07!13.67!PRDM1;;chr19:38085768..38085821,+!p1@ZNF540!1.06!15.63!ZNF540;;chr1:92951607..92951661,-!p1@GFI1!1.06!10.42!GFI1;;chr16:89787937..89787971,+!p1@ZNF276!1.05!26.69!ZNF276;;chr9:3525727..3525828,-!p2@RFX3!1.05!26.69!RFX3;;chr11:128563948..128564003,+!p1@FLI1!1.04!122.40!FLI1;;chr13:74707894..74707947,-!p6@KLF12!1.04!11.07!KLF12;;chr21:36421347..36421380,-!p8@RUNX1!1.03!9.77!RUNX1;;chr7:50344251..50344288,+!p3@IKZF1!1.03!9.77!IKZF1;;chr16:68119324..68119364,+!p1@NFATC3!1.01!41.67!NFATC3;;chr17:38020481..38020506,-!p7@IKZF3!1.00!9.12!IKZF3;;chr14:64970670..64970712,-!p3@ZBTB25!0.99!19.53!ZBTB25;;chr17:36861675..36861697,+!p3@MLLT6!0.98!20.18!MLLT6;;chr14:99738138..99738163,-!p1@BCL11B!0.98!8.46!BCL11B;;chr3:71542651..71542683,-!p22@FOXP1!0.98!8.46!FOXP1;;chr6:391743..391759,+!p1@IRF4!0.98!8.46!IRF4;;chr7:50344144..50344157,+!p6@IKZF1!0.98!8.46!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!0.98!8.46!IKZF1;;chr20:56195525..56195556,-!p2@ZBP1!0.98!8.46!ZBP1;;chrX:101186981..101187030,-!p1@ZMAT1!0.97!28.00!ZMAT1;;chr16:88752889..88752921,-!p1@SNAI3!0.97!9.77!SNAI3;;chr21:36421535..36421610,-!p2@RUNX1!0.96!29.95!RUNX1;;chr18:5295679..5295734,-!p2@ZFP161!0.96!18.23!ZFP161;;chr14:69262947..69262986,-!p3@ZFP36L1!0.95!9.77!ZFP36L1;;chr6:45296048..45296082,+!p1@RUNX2!0.95!9.12!RUNX2;;chr14:75988831..75988847,+!p2@BATF!0.95!7.81!BATF;;chr16:89789271..89789291,+!p5@ZNF276!0.95!7.81!ZNF276;;chr10:8096631..8096660,+!p1@GATA3!0.93!9.12!GATA3;;chr8:60031619..60031676,-!p1@TOX!0.92!16.28!TOX;;chr4:81104895..81104920,+!p2@PRDM8!0.92!11.07!PRDM8;;chr4:109089573..109089585,-!p8@LEF1!0.91!7.16!LEF1;;chr4:57522513..57522548,-!p4@HOPX!0.91!7.16!HOPX;;chr7:50344289..50344323,+!p1@IKZF1!0.91!7.16!IKZF1;;chr19:20748574..20748599,-!p1@ZNF737!0.89!42.32!ZNF737;;chr6:42419649..42419673,-!p3@TRERF1!0.88!11.72!TRERF1;;chr17:46621311..46621332,-!p8@HOXB2!0.87!8.46!HOXB2;;chr19:53289995..53290050,-!p1@ZNF600!0.85!26.69!ZNF600;;chr3:71179699..71179744,-!p2@FOXP1!0.84!47.53!FOXP1;;chr19:53039233..53039247,+!p2@ZNF808!0.84!9.12!ZNF808;;chr3:18487057..18487105,-!p4@SATB1!0.84!5.86!SATB1;;chr4:109088130..109088163,-!p13@LEF1!0.84!5.86!LEF1;;chr6:106546786..106546802,+!p6@PRDM1!0.84!5.86!PRDM1;;chr7:137620650..137620677,-!p3@CREB3L2!0.84!5.86!CREB3L2;;chr15:60884747..60884774,-!p3@RORA!0.83!14.97!RORA;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627;;chr5:142784003..142784065,-!p2@NR3C1!0.24!12.37!NR3C1;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.24!11.72!ZNF319;;chr19:37825540..37825588,+!p2@HKR1!0.24!10.42!HKR1;;chr12:46123464..46123512,+!p1@ARID2!0.24!8.46!ARID2;;chr17:5015129..5015187,-!p1@ZNF232!0.24!7.81!ZNF232;;chr19:12175535..12175554,+!p1@ZNF844!0.24!7.81!ZNF844;;chr19:2841459..2841490,+!p1@ZNF555!0.24!7.81!ZNF555;;chr19:53030906..53030952,+!p1@ZNF808!0.24!5.21!ZNF808;;chr7:99156145..99156207,+!p5@ZNF655!0.24!4.56!ZNF655;;chr3:71179746..71179783,-!p7@FOXP1!0.24!4.56!FOXP1;;chr6:56954867..56954882,+!p2@ZNF451!0.24!3.91!ZNF451;;chr1:27022839..27022890,+!p3@ARID1A!0.24!3.91!ARID1A;;chr19:42759300..42759324,-!p2@ERF!0.24!3.26!ERF;;chr6:45389791..45389832,+!p3@RUNX2!0.24!3.26!RUNX2;;chr15:41913412..41913456,+!p3@MGA!0.24!2.60!MGA;;chr19:24269949..24269969,+!p3@ZNF254!0.24!2.60!ZNF254;;chr16:8962202..8962222,-!p3@CARHSP1!0.24!1.95!CARHSP1;;chr17:42297282..42297300,-!p9@UBTF!0.24!1.95!UBTF;;chr19:19496539..19496576,+!p8@GATAD2A!0.24!1.95!GATAD2A;;chr19:21324863..21324874,+!p2@ZNF431!0.24!1.95!ZNF431;;chr12:498671..498693,-!p4@KDM5A!0.24!1.95!KDM5A;;chr1:244219038..244219054,+!p3@ZNF238!0.24!1.30!ZNF238;;chr1:45805788..45805801,+!p6@TOE1!0.24!1.30!TOE1;;chr20:49547674..49547685,-!p7@ADNP!0.24!1.30!ADNP;;chr17:36873780..36873800,+!p5@MLLT6!0.24!1.30!MLLT6;;chr17:46621101..46621143,-!p7@HOXB2!0.24!1.30!HOXB2;;chr22:29196511..29196541,-!p1@XBP1!0.23!172.54!XBP1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.23!164.72!ZFP36L2;;chr3:169491171..169491205,+!p1@MYNN!0.23!26.04!MYNN;;chr8:71316021..71316068,-!p1@NCOA2!0.23!13.67!NCOA2;;chr19:20278012..20278034,+!p1@ZNF486!0.23!12.37!ZNF486;;chr14:74253865..74253917,-!p2@C14orf43!0.23!9.12!C14orf43;;chr19:9434841..9434886,+!p1@ZNF559!0.23!7.16!ZNF559;;chr19:20011744..20011770,+!p1@ZNF93!0.23!5.21!ZNF93;;chr11:62369352..62369373,-!p5@MTA2!0.23!5.21!MTA2;;chr3:179040643..179040740,+!p2@ZNF639!0.23!5.21!ZNF639;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.23!3.91!ZNF321P;;chr3:71007770..71007789,-!p9@FOXP1!0.23!3.26!FOXP1;;chr4:87928328..87928351,+!p6@AFF1!0.23!3.26!AFF1;;chr8:182424..182462,+!p1@ZNF596!0.23!3.26!ZNF596;;chr14:45722287..45722308,-!p2@MIS18BP1!0.23!3.26!MIS18BP1;;chr9:2017383..2017417,+!p5@SMARCA2!0.23!2.60!SMARCA2;;chr19:52674898..52674931,-!p3@ZNF836!0.23!2.60!ZNF836;;chr7:148959065..148959126,+!p2@ZNF783!0.23!2.60!ZNF783;;chr5:142783792..142783842,-!p5@NR3C1!0.23!1.95!NR3C1;;chr3:44666503..44666516,+!p3@ZNF197!0.23!1.95!ZNF197;;chr10:97890262..97890298,+!p4@ZNF518A!0.23!1.95!ZNF518A;;chr12:53574398..53574412,+!p3@ZNF740!0.23!1.95!ZNF740;;chr19:37407172..37407217,-!p2@ZNF829!0.23!1.95!ZNF829;;chrX:107018969..107019024,-!p6@TSC22D3!0.23!1.30!TSC22D3;;chr1:158979680..158979683,+!p9@IFI16!0.23!1.30!IFI16;;chr14:65569186..65569243,-!p1@MAX!0.22!89.85!MAX;;chr7:6746529..6746591,-!p1@ZNF12!0.22!20.18!ZNF12;;chr1:161015752..161015778,-!p2@USF1!0.22!16.93!USF1;;chr19:4066803..4066886,-!p1@ZBTB7A!0.22!15.63!ZBTB7A;;chr1:27022164..27022220,+!p2@ARID1A!0.22!10.42!ARID1A;;chr19:44716678..44716732,+!p1@ZNF227!0.22!9.77!ZNF227;;chr12:133614062..133614117,+!p1@ZNF84!0.22!9.12!ZNF84;;chr19:21264991..21265026,+!p1@ZNF714!0.22!9.12!ZNF714;;chr19:53898380..53898422,+!p1@ZNF765!0.22!8.46!ZNF765;;chr7:99070499..99070523,+!p1@ZNF789!0.22!7.16!ZNF789;;chr1:40997285..40997352,+!p1@ZNF684!0.22!4.56!ZNF684;;chr19:44645731..44645786,+!p2@ZNF226,p2@ZNF234!0.22!3.91!ZNF234;;chr19:44645700..44645725,+!p3@ZNF226,p3@ZNF234!0.22!2.60!ZNF234;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.22!2.60!ZNF285;;chr16:8962544..8962584,-!p2@CARHSP1!0.22!2.60!CARHSP1;;chr17:38256973..38256990,-!p5@NR1D1!0.22!2.60!NR1D1;;chr2:208394728..208394739,+!p5@CREB1!0.22!2.60!CREB1;;chr6:151712800..151712835,-!p2@ZBTB2!0.22!2.60!ZBTB2;;chr8:144766669..144766683,+!p2@ZNF707!0.22!1.95!ZNF707;;chr1:23857698..23857733,-!p1@E2F2!0.22!1.95!E2F2;;chr20:39946400..39946423,-!p3@ZHX3!0.22!1.95!ZHX3;;chr2:231280954..231280965,+!p2@SP100!0.22!1.95!SP100;;chr3:52719870..52719883,-!p4@PBRM1!0.22!1.95!PBRM1;;chr6:122720837..122720857,+!p2@HSF2!0.22!1.30!HSF2;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12178.12191-129B4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12178.12191-129B4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12178.12191-129B4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12178.12191-129B4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12178.12191-129B4.hg38.nobarcode.ctss.bed.gz
 |id=FF:12191-129B4
 |is_a=EFO:0002091;;FF:0000030;;FF:0000210
 |is_obsolete=
-|library_ids=CNhs12178!RDhi10015
+|library_id=CNhs12178!RDhi10015
+|library_id_phase_based=2:CNhs12178
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12191
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12191
 |name=CD8+ T Cells (pluriselect), donor090309, donation2
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12178,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007958!RNA-Seq@DRS012108
-|accession_numbers=DRX008065;DRR008937;DRZ000362;DRZ001747;CAGE!DRX012348;DRR013796;DRZ002997;NA;RNA-Seq
-|library_id=CNhs12178!RDhi10015
 }}

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FF:12191-129B4: Difference between revisions

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Latest revision as of 18:33, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0