FF:11644-122D6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005482 | ||
|accession_numbers=CAGE;DRX008839;DRR009711;DRZ001136;DRZ002521 | |accession_numbers=CAGE;DRX008839;DRR009711;DRZ001136;DRZ002521;DRZ012486;DRZ013871 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0001954,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0003022,UBERON:0010317,UBERON:0001017,UBERON:0002421,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0000349,UBERON:0002600 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0001954,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0003022,UBERON:0010317,UBERON:0001017,UBERON:0002421,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0000349,UBERON:0002600 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002609,CL:0002608 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002609,CL:0002608 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chrX:90531838..90531861,+!p1@Arx!2.54!431.11!Arx;;chr2:71384802..71384815,-!p1@Dlx2!2.38!288.63!Dlx2;;chr11:98190918..98190951,-!p1@Neurod2!2.30!199.47!Neurod2;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!2.29!241.75!Pou3f3;;chr6:55631042..55631102,-!p1@Neurod6!2.16!143.40!Neurod6;;chr12:28027561..28027591,-!p1@Sox11!2.04!665.51!Sox11;;chr2:61642631..61642684,+!p1@Tbr1!2.02!104.79!Tbr1;;chr8:12395603..12395621,+!p1@Sox1!1.91!80.89!Sox1;;chr10:86956396..86956411,-!p1@Ascl1!1.87!110.31!Ascl1;;chr2:146047829..146047847,+!p1@Insm1!1.84!120.42!Insm1;;chr1:179374784..179374800,+!p2@Zfp238!1.83!78.13!Zfp238;;chr2:73109983..73109996,+!p1@Sp9!1.83!67.10!Sp9;;chrX:108009761..108009788,+!p1@Pou3f4!1.83!66.18!Pou3f4;;chr2:71367871..71367898,+!p1@Dlx1!1.82!65.26!Dlx1;;chr3:34548909..34548927,+!p1@Sox2!1.77!96.52!Sox2;;chr2:71367142..71367167,+!p2@Dlx1!1.72!51.48!Dlx1;;chr7:30088977..30089002,+!p2@Dpf1!1.69!66.18!Dpf1;;chr6:6832076..6832092,-!p1@Dlx5!1.67!53.31!Dlx5;;chr12:30213247..30213333,+!p1@Myt1l!1.66!45.04!Myt1l;;chr2:71366660..71366702,+!p3@Dlx1!1.61!39.53!Dlx1;;chr3:95032091..95032183,-!p1@Mllt11!1.60!312.53!Mllt11;;chr2:71384458..71384526,-!p2@Dlx2!1.60!38.61!Dlx2;;chr4:154335024..154335039,+!p1@Hes5!1.59!45.96!Hes5;;chr15:76352832..76352900,-!p1@Scrt1!1.57!35.85!Scrt1;;chr5:98609885..98609900,+!p1@Prdm8!1.57!35.85!Prdm8;;chr12:109242266..109242295,-!p1@Bcl11b!1.56!279.44!Bcl11b;;chr2:61642743..61642758,+!p2@Tbr1!1.52!32.17!Tbr1;;chr12:50483639..50483654,+!p1@Foxg1!1.50!30.33!Foxg1;;chr2:38206580..38206600,+!p2@Lhx2!1.47!34.93!Lhx2;;chr16:91225808..91225824,+!p1@Olig2!1.47!28.50!Olig2;;chr2:115891534..115891589,-!p1@Meis2!1.46!375.96!Meis2;;chr13:117099847..117099907,-!p1@Isl1!1.46!50.56!Isl1;;chr7:116154364..116154444,+!p1@Tub!1.46!46.88!Tub;;chr9:118387300..118387317,+!p1@Eomes!1.46!27.58!Eomes;;chrX:58146612..58146615,-!p1@Sox3!1.44!26.66!Sox3;;chr7:91558472..91558512,-!p2@Arnt2!1.43!36.77!Arnt2;;chr2:73110004..73110016,+!p2@Sp9!1.43!25.74!Sp9;;chr17:25707623..25707639,-!p1@Sox8!1.42!104.79!Sox8;;chr2:38206744..38206766,+!p1@Lhx2!1.42!30.33!Lhx2;;chr2:61642558..61642595,+!p3@Tbr1!1.41!24.82!Tbr1;;chr3:127336052..127336058,+!p1@Neurog2!1.41!24.82!Neurog2;;chr7:25292160..25292213,+!p3@Zfp428!1.40!58.83!Zfp428;;chr7:30092993..30093076,+!p1@Dpf1!1.39!39.53!Dpf1;;chr16:91270004..91270023,+!p1@Olig1!1.39!26.66!Olig1;;chr17:86020156..86020183,+!p1@Six3!1.38!22.98!Six3;;chr2:115890953..115890974,-!p6@Meis2!1.36!33.09!Meis2;;chr4:124334894..124334899,+!p1@Pou3f1!1.36!28.50!Pou3f1;;chr4:150503457..150503498,-!p3@Camta1!1.35!23.90!Camta1;;chr4:22415443..22415506,-!p1@Pou3f2!1.35!21.14!Pou3f2;;chr6:6831950..6831985,-!p2@Dlx5!1.34!22.98!Dlx5;;chr2:151907546..151907561,+!p1@Scrt2!1.33!20.22!Scrt2;;chr1:57028125..57028149,-!p2@Satb2!1.31!19.30!Satb2;;chr15:76352740..76352781,-!p5@Scrt1!1.29!18.38!Scrt1;;chr17:37140628..37140631,+!p2@Zfp57!1.28!35.85!Zfp57;;chr17:86020115..86020128,+!p2@Six3!1.27!17.47!Six3;;chr7:25292141..25292158,+!p2@Zfp428!1.26!58.83!Zfp428;;chr17:48015839..48015915,-!p3@Foxp4!1.26!20.22!Foxp4;;chr2:79296783..79296801,-!p1@Neurod1!1.24!16.55!Neurod1;;chr12:109241728..109241781,-!p2@Bcl11b!1.22!16.55!Bcl11b;;chr2:71368786..71368813,+!p5@Dlx1!1.22!15.63!Dlx1;;chr3:17954233..17954249,+!p1@Bhlhe22!1.22!15.63!Bhlhe22;;chr11:23978111..23978134,+!p3@Bcl11a!1.21!31.25!Bcl11a;;chr11:23978229..23978268,+!p8@Bcl11a!1.21!17.47!Bcl11a;;chr13:29045559..29045574,-!p1@Sox4!1.20!1188.55!Sox4;;chr17:86020510..86020589,+!p3@Six3!1.20!14.71!Six3;;chr11:98190955..98190968,-!p2@Neurod2!1.20!14.71!Neurod2;;chr1:57028606..57028625,-!p4@Satb2!1.20!14.71!Satb2;;chr12:54349410..54349461,+!p1@Npas3!1.19!17.47!Npas3;;chr11:23977742..23977794,+!p6@Bcl11a!1.18!17.47!Bcl11a;;chr1:169528457..169528482,+!p3@Rxrg!1.17!13.79!Rxrg;;chr2:71384401..71384424,-!p3@Dlx2!1.17!13.79!Dlx2;;chr6:6831928..6831949,-!p3@Dlx5!1.17!13.79!Dlx5;;chr7:25292331..25292421,+!p1@Zfp428!1.14!91.00!Zfp428;;chr11:23980664..23980706,+!p2@Bcl11a!1.14!55.15!Bcl11a;;chr13:78339428..78339466,-!p2@Nr2f1!1.14!17.47!Nr2f1;;chr9:91260594..91260612,-!p1@Zic1!1.14!12.87!Zic1;;chr8:12395500..12395511,+!p5@Sox1!1.14!12.87!Sox1;;chr2:35959541..35959548,-!p2@Lhx6!1.14!12.87!Lhx6;;chr1:57028157..57028173,-!p3@Satb2!1.14!12.87!Satb2;;chr2:151906844..151906873,+!p3@Scrt2!1.14!12.87!Scrt2;;chr19:7342786..7342803,+!p2@Rcor2!1.13!16.55!Rcor2;;chr6:144157924..144157955,-!p2@Sox5!1.13!15.63!Sox5;;chr13:29045321..29045337,-!p2@Sox4!1.12!16.55!Sox4;;chr19:7342725..7342784,+!p1@Rcor2!1.11!48.72!Rcor2;;chr12:3891810..3891829,+!p2@Dnmt3a!1.11!18.38!Dnmt3a;;chr14:13178361..13178386,-!p2@Fezf2!1.11!11.95!Fezf2;;chr7:30089006..30089022,+!p3@Dpf1!1.11!11.95!Dpf1;;chr2:71368815..71368836,+!p4@Dlx1!1.11!11.95!Dlx1;;chr1:169528520..169528542,+!p2@Rxrg!1.11!11.95!Rxrg;;chr2:181501745..181501778,+!p1@Myt1!1.11!11.95!Myt1;;chr19:19185671..19185693,-!p1@Rorb!1.10!27.58!Rorb;;chr13:78339382..78339420,-!p3@Nr2f1!1.10!13.79!Nr2f1;;chr8:111227641..111227672,+!p@chr8:111227641..111227672,+!1.09!30.33!Zfhx3;;chr2:65683890..65683907,+!p1@Csrnp3!1.08!21.14!Csrnp3;;chr15:76352677..76352737,-!p3@Scrt1!1.08!11.03!Scrt1;;chr8:12395629..12395644,+!p6@Sox1!1.08!11.03!Sox1;;chr2:71366574..71366587,+!p8@Dlx1!1.08!11.03!Dlx1;;chr2:71384541..71384555,-!p6@Dlx2!1.08!11.03!Dlx2;;chr4:122673278..122673336,+!p1@Mycl1!1.07!34.01!Mycl1;;chr2:56967334..56967366,-!p1@Nr4a2!1.07!22.06!Nr4a2;;chr7:91558392..91558434,-!p1@Arnt2!1.06!29.42!Arnt2;;chr6:38204274..38204327,-!p3@D630045J12Rik!1.06!21.14!D630045J12Rik;;chr13:78338076..78338104,-!p4@Nr2f1!1.05!12.87!Nr2f1;;chr12:30219426..30219506,+!p2@Myt1l!1.05!10.11!Myt1l;;chrX:108009734..108009752,+!p2@Pou3f4!1.05!10.11!Pou3f4;;chr2:71384425..71384456,-!p4@Dlx2!1.05!10.11!Dlx2;;chr5:75471615..75471622,+!p1@Gsx2!1.05!10.11!Gsx2;;chr1:179374820..179374831,+!p3@Zfp238!1.05!10.11!Zfp238;;chr1:179374764..179374776,+!p5@Zfp238!1.05!10.11!Zfp238;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!1.05!10.11!Pou3f3;;chr3:34548946..34548972,+!p2@Sox2!1.04!11.03!Sox2;;chr12:12948633..12948651,-!p1@Mycn!1.02!91.92!Mycn;;chr11:23978078..23978096,+!p4@Bcl11a!1.02!29.42!Bcl11a;;chr5:122499831..122499891,-!p1@Cux2!1.02!14.71!Cux2;;chr1:57029281..57029326,-!p1@Satb2!1.02!14.71!Satb2;;chr7:25292118..25292129,+!p8@Zfp428!1.01!11.03!Zfp428;;chr19:59244875..59244895,-!p2@Vax1!1.01!9.19!Vax1;;chr2:151907338..151907360,+!p2@Scrt2!1.01!9.19!Scrt2;;chr2:181501710..181501742,+!p2@Myt1!1.01!9.19!Myt1;;chr1:179374862..179374873,+!p6@Zfp238!1.01!9.19!Zfp238;;chr1:169528581..169528607,+!p7@Rxrg!1.01!9.19!Rxrg;;chr3:101814061..101814094,+!p1@Nhlh2!1.01!9.19!Nhlh2;;chr6:144152648..144152680,-!p5@Sox5!1.01!9.19!Sox5;;chr6:85137520..85137563,+!p1@Emx1!1.01!9.19!Emx1;;chr11:23978270..23978290,+!p9@Bcl11a!1.01!9.19!Bcl11a;;chr12:109242296..109242307,-!p3@Bcl11b!0.99!12.87!Bcl11b;;chr13:44936126..44936164,+!p6@Jarid2!0.99!10.11!Jarid2;;chr6:38204214..38204267,-!p4@D630045J12Rik!0.98!16.55!D630045J12Rik;;chr1:169528491..169528505,+!p4@Rxrg!0.97!8.27!Rxrg;;chr1:179372543..179372557,+!p9@Zfp238!0.97!8.27!Zfp238;;chr14:118636238..118636257,-!p2@Sox21!0.97!8.27!Sox21;;chr2:71384193..71384205,-!p5@Dlx2!0.97!8.27!Dlx2;;chr2:71367979..71367993,+!p7@Dlx1!0.97!8.27!Dlx1;;chr4:128483680..128483715,-!p3@Zfp362!0.94!29.42!Zfp362;;chr13:78339476..78339515,-!p1@Nr2f1!0.94!11.95!Nr2f1;;chr4:119960301..119960359,-!p1@Foxo6!0.93!24.82!Foxo6;;chr2:115891409..115891425,-!p2@Meis2!0.92!22.06!Meis2;;chr2:115891381..115891392,-!p5@Meis2!0.92!14.71!Meis2;;chr9:106356278..106356292,+!p3@Pcbp4!0.92!12.87!Pcbp4;;chr4:54957886..54957907,+!p3@Zfp462!0.92!12.87!Zfp462;;chr13:78339134..78339185,-!p5@Nr2f1!0.92!9.19!Nr2f1;;chr13:78338057..78338069,-!p11@Nr2f1!0.92!7.35!Nr2f1;;chr12:50485973..50486015,+!p2@Foxg1!0.92!7.35!Foxg1;;chr2:172375081..172375105,+!p1@Tfap2c!0.92!7.35!Tfap2c;;chr5:24104751..24104773,-!p5@Smarcd3!0.92!7.35!Smarcd3;;chr6:144158267..144158282,-!p16@Sox5!0.92!7.35!Sox5;;chr5:148000254..148000260,+!p1@Gsx1!0.92!7.35!Gsx1;;chr5:24104540..24104584,-!p7@Smarcd3!0.92!7.35!Smarcd3;;chr4:82145196..82145229,-!p7@Nfib!0.92!7.35!Nfib;;chr11:44431115..44431132,+!p9@Ebf1!0.92!7.35!Ebf1;;chr11:23978291..23978323,+!p7@Bcl11a!0.92!7.35!Bcl11a;;chr10:84218800..84218829,+!p2@Rfx4!0.92!7.35!Rfx4;;chr8:12395670..12395682,+!p3@Sox1!0.92!7.35!Sox1;;chr2:35960919..35960954,-!p1@Lhx6!0.91!13.79!Lhx6;;chr19:19185697..19185711,-!p2@Rorb!0.91!9.19!Rorb;;chr13:48356475..48356492,+!p1@Id4!0.90!159.02!Id4;;chr17:37139472..37139514,+!p1@Zfp57!0.90!48.72!Zfp57;;chr9:18278055..18278126,-!p1@Zfp558!0.89!20.22!Zfp558;;chr8:87297878..87297935,-!p3@Nfix!0.89!15.63!Nfix;;chr2:115891521..115891532,-!p8@Meis2!0.89!10.11!Meis2;;chr18:69753168..69753186,+!p12@Tcf4!0.89!9.19!Tcf4;;chr14:118636214..118636235,-!p1@Sox21!0.89!8.27!Sox21;;chr11:80196900..80196917,+!p3@Zfp207!0.88!22.98!Zfp207;;chr3:95032184..95032195,-!p4@Mllt11!0.88!8.27!Mllt11;;chr3:95032197..95032208,-!p3@Mllt11!0.88!8.27!Mllt11;;chr7:130644017..130644092,-!p1@Zkscan2!0.87!12.87!Zkscan2;;chr11:44431016..44431045,+!p5@Ebf1!0.87!9.19!Ebf1;;chr10:42303385..42303401,-!p1@Nr2e1!0.87!6.43!Nr2e1;;chr12:109241804..109241823,-!p5@Bcl11b!0.87!6.43!Bcl11b;;chr2:71366714..71366725,+!p12@Dlx1!0.87!6.43!Dlx1;;chr4:97248473..97248496,+!p16@Nfia!0.87!6.43!Nfia;;chr2:71367855..71367864,+!p6@Dlx1!0.87!6.43!Dlx1;;chr4:82145232..82145259,-!p9@Nfib!0.87!6.43!Nfib;;chr12:50483663..50483678,+!p3@Foxg1!0.87!6.43!Foxg1;;chr14:13178323..13178347,-!p3@Fezf2!0.87!6.43!Fezf2;;chr12:120085778..120085784,+!p2@Sp8!0.87!6.43!Sp8;;chr1:189821714..189821761,+!p1@Esrrg!0.86!11.95!Esrrg;;chr6:98978245..98978289,-!p1@Foxp1!0.85!96.52!Foxp1;;chr3:95032558..95032641,-!p2@Mllt11!0.85!35.85!Mllt11;;chr15:75447105..75447159,+!p1@Zfp41!0.85!25.74!Zfp41;;chr2:152223783..152223812,-!p4@Sox12!0.85!14.71!Sox12;;chr3:95032213..95032226,-!p6@Mllt11!0.85!7.35!Mllt11;;chr17:32525943..32525992,-!p4@Wiz!0.84!9.19!Wiz;;chr4:13670571..13670625,+!p1@Runx1t1!0.83!16.55!Runx1t1;;chr5:39075982..39076052,-!p1@Zfp518b!0.81!42.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dm12!0.28!0.92!Prdm12;;chr2:105509100..105509107,+!p6@Pax6!0.28!0.92!Pax6;;chr19:59533163..59533185,+!p3@Emx2!0.28!0.92!Emx2;;chr1:19199119..19199134,+!p4@Tfap2b!0.28!0.92!Tfap2b;;chr1:169619683..169619694,+!p1@Lmx1a!0.28!0.92!Lmx1a;;chr19:55969923..55969944,+!p6@Tcf7l2!0.28!0.92!Tcf7l2;;chr19:55969998..55970001,+!p40@Tcf7l2!0.28!0.92!Tcf7l2;;chr2:38194778..38194798,+!p3@Lhx2!0.28!0.92!Lhx2;;chr2:151907604..151907629,+!p4@Scrt2!0.28!0.92!Scrt2;;chr2:147012125..147012149,-!p1@Nkx2-2!0.28!0.92!Nkx2-2;;chr2:65768149..65768173,+!p4@Csrnp3!0.28!0.92!Csrnp3;;chr1:91827756..91827773,-!p1@Gbx2!0.28!0.92!Gbx2;;chr2:168427068..168427115,-!p3@Nfatc2!0.28!0.92!Nfatc2;;chr2:172375136..172375149,+!p2@Tfap2c!0.28!0.92!Tfap2c;;chr2:56967316..56967327,-!p3@Nr4a2!0.28!0.92!Nr4a2;;chr2:56965464..56965474,-!p12@Nr4a2!0.28!0.92!Nr4a2;;chr2:105522840..105522844,+!p22@Pax6!0.28!0.92!Pax6;;chr1:57029027..57029056,-!p7@Satb2!0.28!0.92!Satb2;;chr2:115884524..115884535,-!p27@Meis2!0.28!0.92!Meis2;;chr11:50641158..50641165,-!p3@Zfp354c!0.28!0.92!Zfp354c;;chr11:98826178..98826197,+!p7@Rara!0.28!0.92!Rara;;chr11:98601909..98601922,+!p11@Thra!0.28!0.92!Thra;;chr10:84218931..84218942,+!p4@Rfx4!0.28!0.92!Rfx4;;chr11:44431053..44431060,+!p14@Ebf1!0.28!0.92!Ebf1;;chr12:25780945..25780961,-!p1@Id2!0.27!286.80!Id2;;chr13:58503810..58503833,-!p2@Hnrnpk!0.27!88.25!Hnrnpk;;chr7:133839456..133839523,+!p1@Bola2!0.27!82.73!Bola2;;chr10:127896346..127896384,+!p1@Smarcc2!0.27!66.18!Smarcc2;;chr16:20141134..20141213,+!p1@Yeats2!0.27!44.12!Yeats2;;chr8:13869673..13869740,+!p1@Zfp828!0.27!39.53!Zfp828;;chr4:97444297..97444323,+!p2@Nfia!0.27!25.74!Nfia;;chr6:86476190..86476201,-!p3@Pcbp1!0.27!21.14!Pcbp1;;chr11:115891618..115891699,+!p1@Unk!0.27!20.22!Unk;;chr11:72990702..72990737,+!p1@LOC100047518,p1@Tax1bp3!0.27!15.63!Tax1bp3;;chr4:118967125..118967143,-!p2@Ybx1!0.27!10.11!Ybx1;;chr19:5610038..5610066,-!p1@Kat5!0.27!7.35!Kat5;;chr15:76709662..76709676,+!p2@Zfp7!0.27!2.76!Zfp7;;chrX:45947746..45947762,-!p2@Zfp280c!0.27!2.76!Zfp280c;;chr2:168032516..168032525,-!p5@Adnp!0.27!1.84!Adnp;;chr14:52634651..52634678,-!p7@Zfp219!0.27!1.84!Zfp219;;chr4:135840552..135840567,+!p4@Zfp46!0.27!1.84!Zfp46;;chr9:110034493..110034502,+!p2@Smarcc1!0.27!1.84!Smarcc1;;chr3:151873433..151873498,+!p1@Fubp1!0.26!218.77!Fubp1;;chr17:27110106..27110164,+!p1@Ggnbp1,p1@Zbtb9!0.26!26.66!Zbtb9;;chr4:117354838..117354884,-!p1@Dmap1!0.26!22.98!Dmap1;;chr17:32967140..32967197,-!p1@Zfp799!0.26!22.06!Zfp799;;chr6:128312937..128313076,+!p1@Foxm1!0.26!22.06!Foxm1;;chr9:36954842..36954908,-!p1@Pknox2!0.26!18.38!Pknox2;;chr17:31701694..31701799,+!p1@Pknox1!0.26!17.47!Pknox1;;chr15:76709732..76709764,+!p1@Zfp7!0.26!7.35!Zfp7;;chr4:151401741..151401793,-!p1@Zbtb48!0.26!6.43!Zbtb48;;chr3:30500978..30501018,+!p1@Mynn!0.26!3.68!Mynn;;chrX:7339829..7339855,+!p3@Tfe3!0.26!3.68!Tfe3;;chr13:15555035..15555073,+!p4@Gli3!0.26!3.68!Gli3;;chr14:17407970..17408015,-!p2@Rarb!0.26!3.68!Rarb;;chr13:5860740..5860747,+!p4@Klf6!0.26!2.76!Klf6;;chr5:122500142..122500167,-!p2@Cux2!0.26!2.76!Cux2;;chr4:119212321..119212332,+!p2@Foxj3!0.26!1.84!Foxj3;;chr18:79306603..79306620,-!p4@Setbp1!0.26!1.84!Setbp1;;chr4:149655682..149655742,+!p1@Rere!0.25!50.56!Rere;;chr16:4213951..4213995,-!p@chr16:4213951..4213995,-!0.25!45.04!Crebbp;;chr8:114167393..114167440,+!p1@Zfp1!0.25!18.38!Zfp1;;chr4:135840573..135840601,+!p1@Zfp46!0.25!11.95!Zfp46;;chr8:72498266..72498306,-!p3@Gatad2a!0.25!10.11!Gatad2a;;chr8:72498134..72498156,-!p7@Gatad2a!0.25!5.52!Gatad2a;;chr2:25562263..25562314,+!p2@Bmyc!0.25!5.52!Bmyc;;chr11:97524415..97524455,+!p2@Mllt6!0.25!5.52!Mllt6;;chr12:77470507..77470572,-!p2@Zbtb25!0.25!5.52!Zbtb25;;chr6:92041399..92041417,+!p2@Nr2c2!0.25!4.60!Nr2c2;;chr6:14851287..14851342,+!p1@Foxp2!0.25!4.60!Foxp2;;chr4:6917921..6917970,-!p2@Tox!0.25!3.68!Tox;;chr1:64167550..64167618,-!p4@Klf7!0.25!3.68!Klf7;;chr17:48061631..48061648,-!p7@Foxp4!0.25!3.68!Foxp4;;chr7:50817661..50817687,+!p2@LOC100505180,p2@Zfp658!0.25!2.76!Zfp658;; | |expression_enrichment_score=chrX:90531838..90531861,+!p1@Arx!2.54!431.11!Arx;;chr2:71384802..71384815,-!p1@Dlx2!2.38!288.63!Dlx2;;chr11:98190918..98190951,-!p1@Neurod2!2.30!199.47!Neurod2;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!2.29!241.75!Pou3f3;;chr6:55631042..55631102,-!p1@Neurod6!2.16!143.40!Neurod6;;chr12:28027561..28027591,-!p1@Sox11!2.04!665.51!Sox11;;chr2:61642631..61642684,+!p1@Tbr1!2.02!104.79!Tbr1;;chr8:12395603..12395621,+!p1@Sox1!1.91!80.89!Sox1;;chr10:86956396..86956411,-!p1@Ascl1!1.87!110.31!Ascl1;;chr2:146047829..146047847,+!p1@Insm1!1.84!120.42!Insm1;;chr1:179374784..179374800,+!p2@Zfp238!1.83!78.13!Zfp238;;chr2:73109983..73109996,+!p1@Sp9!1.83!67.10!Sp9;;chrX:108009761..108009788,+!p1@Pou3f4!1.83!66.18!Pou3f4;;chr2:71367871..71367898,+!p1@Dlx1!1.82!65.26!Dlx1;;chr3:34548909..34548927,+!p1@Sox2!1.77!96.52!Sox2;;chr2:71367142..71367167,+!p2@Dlx1!1.72!51.48!Dlx1;;chr7:30088977..30089002,+!p2@Dpf1!1.69!66.18!Dpf1;;chr6:6832076..6832092,-!p1@Dlx5!1.67!53.31!Dlx5;;chr12:30213247..30213333,+!p1@Myt1l!1.66!45.04!Myt1l;;chr2:71366660..71366702,+!p3@Dlx1!1.61!39.53!Dlx1;;chr3:95032091..95032183,-!p1@Mllt11!1.60!312.53!Mllt11;;chr2:71384458..71384526,-!p2@Dlx2!1.60!38.61!Dlx2;;chr4:154335024..154335039,+!p1@Hes5!1.59!45.96!Hes5;;chr15:76352832..76352900,-!p1@Scrt1!1.57!35.85!Scrt1;;chr5:98609885..98609900,+!p1@Prdm8!1.57!35.85!Prdm8;;chr12:109242266..109242295,-!p1@Bcl11b!1.56!279.44!Bcl11b;;chr2:61642743..61642758,+!p2@Tbr1!1.52!32.17!Tbr1;;chr12:50483639..50483654,+!p1@Foxg1!1.50!30.33!Foxg1;;chr2:38206580..38206600,+!p2@Lhx2!1.47!34.93!Lhx2;;chr16:91225808..91225824,+!p1@Olig2!1.47!28.50!Olig2;;chr2:115891534..115891589,-!p1@Meis2!1.46!375.96!Meis2;;chr13:117099847..117099907,-!p1@Isl1!1.46!50.56!Isl1;;chr7:116154364..116154444,+!p1@Tub!1.46!46.88!Tub;;chr9:118387300..118387317,+!p1@Eomes!1.46!27.58!Eomes;;chrX:58146612..58146615,-!p1@Sox3!1.44!26.66!Sox3;;chr7:91558472..91558512,-!p2@Arnt2!1.43!36.77!Arnt2;;chr2:73110004..73110016,+!p2@Sp9!1.43!25.74!Sp9;;chr17:25707623..25707639,-!p1@Sox8!1.42!104.79!Sox8;;chr2:38206744..38206766,+!p1@Lhx2!1.42!30.33!Lhx2;;chr2:61642558..61642595,+!p3@Tbr1!1.41!24.82!Tbr1;;chr3:127336052..127336058,+!p1@Neurog2!1.41!24.82!Neurog2;;chr7:25292160..25292213,+!p3@Zfp428!1.40!58.83!Zfp428;;chr7:30092993..30093076,+!p1@Dpf1!1.39!39.53!Dpf1;;chr16:91270004..91270023,+!p1@Olig1!1.39!26.66!Olig1;;chr17:86020156..86020183,+!p1@Six3!1.38!22.98!Six3;;chr2:115890953..115890974,-!p6@Meis2!1.36!33.09!Meis2;;chr4:124334894..124334899,+!p1@Pou3f1!1.36!28.50!Pou3f1;;chr4:150503457..150503498,-!p3@Camta1!1.35!23.90!Camta1;;chr4:22415443..22415506,-!p1@Pou3f2!1.35!21.14!Pou3f2;;chr6:6831950..6831985,-!p2@Dlx5!1.34!22.98!Dlx5;;chr2:151907546..151907561,+!p1@Scrt2!1.33!20.22!Scrt2;;chr1:57028125..57028149,-!p2@Satb2!1.31!19.30!Satb2;;chr15:76352740..76352781,-!p5@Scrt1!1.29!18.38!Scrt1;;chr17:37140628..37140631,+!p2@Zfp57!1.28!35.85!Zfp57;;chr17:86020115..86020128,+!p2@Six3!1.27!17.47!Six3;;chr7:25292141..25292158,+!p2@Zfp428!1.26!58.83!Zfp428;;chr17:48015839..48015915,-!p3@Foxp4!1.26!20.22!Foxp4;;chr2:79296783..79296801,-!p1@Neurod1!1.24!16.55!Neurod1;;chr12:109241728..109241781,-!p2@Bcl11b!1.22!16.55!Bcl11b;;chr2:71368786..71368813,+!p5@Dlx1!1.22!15.63!Dlx1;;chr3:17954233..17954249,+!p1@Bhlhe22!1.22!15.63!Bhlhe22;;chr11:23978111..23978134,+!p3@Bcl11a!1.21!31.25!Bcl11a;;chr11:23978229..23978268,+!p8@Bcl11a!1.21!17.47!Bcl11a;;chr13:29045559..29045574,-!p1@Sox4!1.20!1188.55!Sox4;;chr17:86020510..86020589,+!p3@Six3!1.20!14.71!Six3;;chr11:98190955..98190968,-!p2@Neurod2!1.20!14.71!Neurod2;;chr1:57028606..57028625,-!p4@Satb2!1.20!14.71!Satb2;;chr12:54349410..54349461,+!p1@Npas3!1.19!17.47!Npas3;;chr11:23977742..23977794,+!p6@Bcl11a!1.18!17.47!Bcl11a;;chr1:169528457..169528482,+!p3@Rxrg!1.17!13.79!Rxrg;;chr2:71384401..71384424,-!p3@Dlx2!1.17!13.79!Dlx2;;chr6:6831928..6831949,-!p3@Dlx5!1.17!13.79!Dlx5;;chr7:25292331..25292421,+!p1@Zfp428!1.14!91.00!Zfp428;;chr11:23980664..23980706,+!p2@Bcl11a!1.14!55.15!Bcl11a;;chr13:78339428..78339466,-!p2@Nr2f1!1.14!17.47!Nr2f1;;chr9:91260594..91260612,-!p1@Zic1!1.14!12.87!Zic1;;chr8:12395500..12395511,+!p5@Sox1!1.14!12.87!Sox1;;chr2:35959541..35959548,-!p2@Lhx6!1.14!12.87!Lhx6;;chr1:57028157..57028173,-!p3@Satb2!1.14!12.87!Satb2;;chr2:151906844..151906873,+!p3@Scrt2!1.14!12.87!Scrt2;;chr19:7342786..7342803,+!p2@Rcor2!1.13!16.55!Rcor2;;chr6:144157924..144157955,-!p2@Sox5!1.13!15.63!Sox5;;chr13:29045321..29045337,-!p2@Sox4!1.12!16.55!Sox4;;chr19:7342725..7342784,+!p1@Rcor2!1.11!48.72!Rcor2;;chr12:3891810..3891829,+!p2@Dnmt3a!1.11!18.38!Dnmt3a;;chr14:13178361..13178386,-!p2@Fezf2!1.11!11.95!Fezf2;;chr7:30089006..30089022,+!p3@Dpf1!1.11!11.95!Dpf1;;chr2:71368815..71368836,+!p4@Dlx1!1.11!11.95!Dlx1;;chr1:169528520..169528542,+!p2@Rxrg!1.11!11.95!Rxrg;;chr2:181501745..181501778,+!p1@Myt1!1.11!11.95!Myt1;;chr19:19185671..19185693,-!p1@Rorb!1.10!27.58!Rorb;;chr13:78339382..78339420,-!p3@Nr2f1!1.10!13.79!Nr2f1;;chr8:111227641..111227672,+!p@chr8:111227641..111227672,+!1.09!30.33!Zfhx3;;chr2:65683890..65683907,+!p1@Csrnp3!1.08!21.14!Csrnp3;;chr15:76352677..76352737,-!p3@Scrt1!1.08!11.03!Scrt1;;chr8:12395629..12395644,+!p6@Sox1!1.08!11.03!Sox1;;chr2:71366574..71366587,+!p8@Dlx1!1.08!11.03!Dlx1;;chr2:71384541..71384555,-!p6@Dlx2!1.08!11.03!Dlx2;;chr4:122673278..122673336,+!p1@Mycl1!1.07!34.01!Mycl1;;chr2:56967334..56967366,-!p1@Nr4a2!1.07!22.06!Nr4a2;;chr7:91558392..91558434,-!p1@Arnt2!1.06!29.42!Arnt2;;chr6:38204274..38204327,-!p3@D630045J12Rik!1.06!21.14!D630045J12Rik;;chr13:78338076..78338104,-!p4@Nr2f1!1.05!12.87!Nr2f1;;chr12:30219426..30219506,+!p2@Myt1l!1.05!10.11!Myt1l;;chrX:108009734..108009752,+!p2@Pou3f4!1.05!10.11!Pou3f4;;chr2:71384425..71384456,-!p4@Dlx2!1.05!10.11!Dlx2;;chr5:75471615..75471622,+!p1@Gsx2!1.05!10.11!Gsx2;;chr1:179374820..179374831,+!p3@Zfp238!1.05!10.11!Zfp238;;chr1:179374764..179374776,+!p5@Zfp238!1.05!10.11!Zfp238;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!1.05!10.11!Pou3f3;;chr3:34548946..34548972,+!p2@Sox2!1.04!11.03!Sox2;;chr12:12948633..12948651,-!p1@Mycn!1.02!91.92!Mycn;;chr11:23978078..23978096,+!p4@Bcl11a!1.02!29.42!Bcl11a;;chr5:122499831..122499891,-!p1@Cux2!1.02!14.71!Cux2;;chr1:57029281..57029326,-!p1@Satb2!1.02!14.71!Satb2;;chr7:25292118..25292129,+!p8@Zfp428!1.01!11.03!Zfp428;;chr19:59244875..59244895,-!p2@Vax1!1.01!9.19!Vax1;;chr2:151907338..151907360,+!p2@Scrt2!1.01!9.19!Scrt2;;chr2:181501710..181501742,+!p2@Myt1!1.01!9.19!Myt1;;chr1:179374862..179374873,+!p6@Zfp238!1.01!9.19!Zfp238;;chr1:169528581..169528607,+!p7@Rxrg!1.01!9.19!Rxrg;;chr3:101814061..101814094,+!p1@Nhlh2!1.01!9.19!Nhlh2;;chr6:144152648..144152680,-!p5@Sox5!1.01!9.19!Sox5;;chr6:85137520..85137563,+!p1@Emx1!1.01!9.19!Emx1;;chr11:23978270..23978290,+!p9@Bcl11a!1.01!9.19!Bcl11a;;chr12:109242296..109242307,-!p3@Bcl11b!0.99!12.87!Bcl11b;;chr13:44936126..44936164,+!p6@Jarid2!0.99!10.11!Jarid2;;chr6:38204214..38204267,-!p4@D630045J12Rik!0.98!16.55!D630045J12Rik;;chr1:169528491..169528505,+!p4@Rxrg!0.97!8.27!Rxrg;;chr1:179372543..179372557,+!p9@Zfp238!0.97!8.27!Zfp238;;chr14:118636238..118636257,-!p2@Sox21!0.97!8.27!Sox21;;chr2:71384193..71384205,-!p5@Dlx2!0.97!8.27!Dlx2;;chr2:71367979..71367993,+!p7@Dlx1!0.97!8.27!Dlx1;;chr4:128483680..128483715,-!p3@Zfp362!0.94!29.42!Zfp362;;chr13:78339476..78339515,-!p1@Nr2f1!0.94!11.95!Nr2f1;;chr4:119960301..119960359,-!p1@Foxo6!0.93!24.82!Foxo6;;chr2:115891409..115891425,-!p2@Meis2!0.92!22.06!Meis2;;chr2:115891381..115891392,-!p5@Meis2!0.92!14.71!Meis2;;chr9:106356278..106356292,+!p3@Pcbp4!0.92!12.87!Pcbp4;;chr4:54957886..54957907,+!p3@Zfp462!0.92!12.87!Zfp462;;chr13:78339134..78339185,-!p5@Nr2f1!0.92!9.19!Nr2f1;;chr13:78338057..78338069,-!p11@Nr2f1!0.92!7.35!Nr2f1;;chr12:50485973..50486015,+!p2@Foxg1!0.92!7.35!Foxg1;;chr2:172375081..172375105,+!p1@Tfap2c!0.92!7.35!Tfap2c;;chr5:24104751..24104773,-!p5@Smarcd3!0.92!7.35!Smarcd3;;chr6:144158267..144158282,-!p16@Sox5!0.92!7.35!Sox5;;chr5:148000254..148000260,+!p1@Gsx1!0.92!7.35!Gsx1;;chr5:24104540..24104584,-!p7@Smarcd3!0.92!7.35!Smarcd3;;chr4:82145196..82145229,-!p7@Nfib!0.92!7.35!Nfib;;chr11:44431115..44431132,+!p9@Ebf1!0.92!7.35!Ebf1;;chr11:23978291..23978323,+!p7@Bcl11a!0.92!7.35!Bcl11a;;chr10:84218800..84218829,+!p2@Rfx4!0.92!7.35!Rfx4;;chr8:12395670..12395682,+!p3@Sox1!0.92!7.35!Sox1;;chr2:35960919..35960954,-!p1@Lhx6!0.91!13.79!Lhx6;;chr19:19185697..19185711,-!p2@Rorb!0.91!9.19!Rorb;;chr13:48356475..48356492,+!p1@Id4!0.90!159.02!Id4;;chr17:37139472..37139514,+!p1@Zfp57!0.90!48.72!Zfp57;;chr9:18278055..18278126,-!p1@Zfp558!0.89!20.22!Zfp558;;chr8:87297878..87297935,-!p3@Nfix!0.89!15.63!Nfix;;chr2:115891521..115891532,-!p8@Meis2!0.89!10.11!Meis2;;chr18:69753168..69753186,+!p12@Tcf4!0.89!9.19!Tcf4;;chr14:118636214..118636235,-!p1@Sox21!0.89!8.27!Sox21;;chr11:80196900..80196917,+!p3@Zfp207!0.88!22.98!Zfp207;;chr3:95032184..95032195,-!p4@Mllt11!0.88!8.27!Mllt11;;chr3:95032197..95032208,-!p3@Mllt11!0.88!8.27!Mllt11;;chr7:130644017..130644092,-!p1@Zkscan2!0.87!12.87!Zkscan2;;chr11:44431016..44431045,+!p5@Ebf1!0.87!9.19!Ebf1;;chr10:42303385..42303401,-!p1@Nr2e1!0.87!6.43!Nr2e1;;chr12:109241804..109241823,-!p5@Bcl11b!0.87!6.43!Bcl11b;;chr2:71366714..71366725,+!p12@Dlx1!0.87!6.43!Dlx1;;chr4:97248473..97248496,+!p16@Nfia!0.87!6.43!Nfia;;chr2:71367855..71367864,+!p6@Dlx1!0.87!6.43!Dlx1;;chr4:82145232..82145259,-!p9@Nfib!0.87!6.43!Nfib;;chr12:50483663..50483678,+!p3@Foxg1!0.87!6.43!Foxg1;;chr14:13178323..13178347,-!p3@Fezf2!0.87!6.43!Fezf2;;chr12:120085778..120085784,+!p2@Sp8!0.87!6.43!Sp8;;chr1:189821714..189821761,+!p1@Esrrg!0.86!11.95!Esrrg;;chr6:98978245..98978289,-!p1@Foxp1!0.85!96.52!Foxp1;;chr3:95032558..95032641,-!p2@Mllt11!0.85!35.85!Mllt11;;chr15:75447105..75447159,+!p1@Zfp41!0.85!25.74!Zfp41;;chr2:152223783..152223812,-!p4@Sox12!0.85!14.71!Sox12;;chr3:95032213..95032226,-!p6@Mllt11!0.85!7.35!Mllt11;;chr17:32525943..32525992,-!p4@Wiz!0.84!9.19!Wiz;;chr4:13670571..13670625,+!p1@Runx1t1!0.83!16.55!Runx1t1;;chr5:39075982..39076052,-!p1@Zfp518b!0.81!42.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| ||
Line 44: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12110 | |library_id=CNhs12110 | ||
| | |library_id_phase_based=2:CNhs12110 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11644 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11644 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor3.CNhs12110.11644-122D6.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor3.CNhs12110.11644-122D6.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor3.CNhs12110.11644-122D6.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor3.CNhs12110.11644-122D6.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520hippocampal%252c%2520donor3.CNhs12110.11644-122D6.mm9.nobarcode.rdna.fa.gz | |||
|name=Mouse Neurons - hippocampal, donor3 | |name=Mouse Neurons - hippocampal, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12110,LSID839,release011,COMPLETED | |profile_hcage=CNhs12110,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.11779559634038,0,0,0.28312448614836,0,0,-0.386200560896736,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0.561517561618512,-0.558422792324031,0,0,0,0,0,-0.209322725495826,0.199710508918196,0.0385758257921702,-0.0623298771198322,0.92623844657323,0.747884995716671,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.0428469550828748,0,-0.130696565450787,0,0,0,0.0240972528385661,-0.310650657339386,0.125033443377277,-0.140687683267293,0,-0.0780086007519514,0.081028701852325,0,0,0,0.0523585594561709,0.125986371641797,-0.31279039459221,-0.0788315948399074,0,0,0,0,0,0,0,-0.146960869996828,0.0176555282994105,0,0,0,0.574917061061619,0 | |repeat_enrich_byfamily=-0.11779559634038,0,0,0.28312448614836,0,0,-0.386200560896736,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0.561517561618512,-0.558422792324031,0,0,0,0,0,-0.209322725495826,0.199710508918196,0.0385758257921702,-0.0623298771198322,0.92623844657323,0.747884995716671,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.0428469550828748,0,-0.130696565450787,0,0,0,0.0240972528385661,-0.310650657339386,0.125033443377277,-0.140687683267293,0,-0.0780086007519514,0.081028701852325,0,0,0,0.0523585594561709,0.125986371641797,-0.31279039459221,-0.0788315948399074,0,0,0,0,0,0,0,-0.146960869996828,0.0176555282994105,0,0,0,0.574917061061619,0 | ||
Line 87: | Line 97: | ||
|top_motifs=LHX3,4:3.28018472769;SOX2:2.73596631328;LEF1_TCF7_TCF7L1,2:2.60770356002;OCT4_SOX2{dimer}:2.40346797097;SOX{8,9,10}:2.26293942561;NKX6-1,2:2.13006470152;SOX17:2.1208071052;POU6F1:1.98752374007;MED-1{core}:1.94831662728;TFDP1:1.94231927327;PRRX1,2:1.90570341398;EN1,2:1.87952617162;VSX1,2:1.84423599707;BREu{core}:1.82957840863;FOXM1:1.68323590713;POU3F1..4:1.6633299969;MZF1:1.63339488508;PPARG:1.612531147;POU2F1..3:1.61194852834;ZFP161:1.56661448983;POU5F1:1.54532604759;NRF1:1.53388250422;AHR_ARNT_ARNT2:1.43549846964;NKX2-3_NKX2-5:1.42101295283;PRDM1:1.39733077072;CDC5L:1.39476494307;ZBTB6:1.38509168919;ONECUT1,2:1.37570069518;FOXQ1:1.36334384372;MTE{core}:1.34838863239;ADNP_IRX_SIX_ZHX:1.30608856519;NANOG:1.28879559036;HOX{A5,B5}:1.28458010595;FOXL1:1.2277971143;PAX8:1.22537341197;PAX4:1.18684779648;YY1:1.14980983836;RORA:1.12941210713;RREB1:1.12377182108;HOX{A4,D4}:1.07278007271;ZNF384:1.07222433845;LMO2:1.0717563904;HMGA1,2:1.04378870658;UFEwm:1.04248140319;KLF4:1.03278017049;RFX1:1.0243574644;REST:1.01233210283;TFAP2B:0.997837102235;T:0.975023021392;NR5A1,2:0.955853564746;PATZ1:0.95364474317;ZIC1..3:0.940387894624;SMAD1..7,9:0.938178267925;ZNF143:0.926307338212;EGR1..3:0.905817932271;NANOG{mouse}:0.881398443047;ATF2:0.875930719937;PAX6:0.84519784293;HES1:0.841302836828;CDX1,2,4:0.825802547249;DBP:0.778040786135;ZNF423:0.75917713901;GFI1B:0.753326771876;JUN:0.750145835221;NFY{A,B,C}:0.734856930422;HIC1:0.663169843487;TEF:0.651054348647;RFX2..5_RFXANK_RFXAP:0.64014219553;NR1H4:0.619405961568;NR3C1:0.616156434029;NHLH1,2:0.586234995121;PAX1,9:0.57396480278;FOXD3:0.572077769701;ATF5_CREB3:0.525658573181;GTF2I:0.488074753009;PAX5:0.430798944642;PBX1:0.368142196212;EP300:0.365779402298;GZF1:0.364210449427;SOX5:0.361981456467;NFE2L1:0.331824474666;ELK1,4_GABP{A,B1}:0.331124053886;ZBTB16:0.287333421953;MTF1:0.258976294789;ALX1:0.255126848533;NFIX:0.187600013568;STAT1,3:0.161976125091;MYFfamily:0.155490927664;HOXA9_MEIS1:0.142416336059;GTF2A1,2:0.104215969056;RBPJ:0.100175270179;POU1F1:0.0910056868262;GFI1:0.0835653094147;MAZ:0.0714267366403;STAT5{A,B}:0.0512770954916;MYB:0.0510574332778;E2F1..5:0.0500372498451;PITX1..3:0.0380741158433;CRX:0.0287247091879;FOX{F1,F2,J1}:-0.0050913946534;CREB1:-0.00589355373682;BPTF:-0.0539346688949;GCM1,2:-0.0598360210624;HBP1_HMGB_SSRP1_UBTF:-0.0638232720978;ARID5B:-0.0992673626425;HLF:-0.105683997274;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.144383443298;HIF1A:-0.145080160243;FOXP3:-0.149840927656;GATA4:-0.163442664851;EVI1:-0.188995601172;RXR{A,B,G}:-0.21236472322;TGIF1:-0.220705651906;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.240924522737;NKX2-1,4:-0.241643853422;CUX2:-0.247972815091;HSF1,2:-0.249705436557;HMX1:-0.256414808861;ZNF238:-0.301641606654;RUNX1..3:-0.335116851479;SPZ1:-0.35147056036;HAND1,2:-0.362646582752;TLX1..3_NFIC{dimer}:-0.405596714338;TOPORS:-0.467710983205;IKZF2:-0.467933457538;bHLH_family:-0.485705802243;NKX3-1:-0.509323335333;FOXP1:-0.518382404345;ATF4:-0.528579784333;ALX4:-0.531596253947;HNF4A_NR2F1,2:-0.534130009519;FOXA2:-0.542525369686;TFAP4:-0.55355611192;MAFB:-0.555302385384;SPIB:-0.555666325507;ESR1:-0.562189437246;MEF2{A,B,C,D}:-0.564598967516;NFIL3:-0.571624815776;SNAI1..3:-0.608836964518;AR:-0.618149474632;NKX3-2:-0.640384323794;ZEB1:-0.658431046426;HNF1A:-0.662890212055;XCPE1{core}:-0.662924410232;NFKB1_REL_RELA:-0.666515645419;IKZF1:-0.668723458842;FOX{I1,J2}:-0.675059299237;TAL1_TCF{3,4,12}:-0.675372873045;TBP:-0.675551689837;NKX2-2,8:-0.681538544396;SPI1:-0.684293026411;GATA6:-0.713775044313;MYOD1:-0.75070065417;AIRE:-0.753953572415;TFAP2{A,C}:-0.765316417889;TLX2:-0.789429931413;FOXN1:-0.79772690608;ESRRA:-0.800567460821;MYBL2:-0.80805445498;FOS_FOS{B,L1}_JUN{B,D}:-0.850320889456;SP1:-0.872655252271;PAX2:-0.874255131172;NR6A1:-0.880302087169;ELF1,2,4:-0.889861719999;BACH2:-0.946338868867;NFE2:-0.96120298556;TBX4,5:-0.977839139061;ZNF148:-1.00790116669;NFE2L2:-1.02107506558;GLI1..3:-1.02574208989;ETS1,2:-1.04052599003;DMAP1_NCOR{1,2}_SMARC:-1.04815495066;NFATC1..3:-1.07532371946;SREBF1,2:-1.08126463347;TP53:-1.08454427187;RXRA_VDR{dimer}:-1.1282858213;TEAD1:-1.14275154729;PDX1:-1.1581648507;FOX{D1,D2}:-1.26430314315;FOXO1,3,4:-1.34829590871;CEBPA,B_DDIT3:-1.39386816989;IRF1,2:-1.40338759244;EBF1:-1.42872681467;FOSL2:-1.5752958048;SRF:-1.64471509594;IRF7:-1.67228714076;STAT2,4,6:-1.77067521284;TFCP2:-1.84477171661;ATF6:-1.8725294765 | |top_motifs=LHX3,4:3.28018472769;SOX2:2.73596631328;LEF1_TCF7_TCF7L1,2:2.60770356002;OCT4_SOX2{dimer}:2.40346797097;SOX{8,9,10}:2.26293942561;NKX6-1,2:2.13006470152;SOX17:2.1208071052;POU6F1:1.98752374007;MED-1{core}:1.94831662728;TFDP1:1.94231927327;PRRX1,2:1.90570341398;EN1,2:1.87952617162;VSX1,2:1.84423599707;BREu{core}:1.82957840863;FOXM1:1.68323590713;POU3F1..4:1.6633299969;MZF1:1.63339488508;PPARG:1.612531147;POU2F1..3:1.61194852834;ZFP161:1.56661448983;POU5F1:1.54532604759;NRF1:1.53388250422;AHR_ARNT_ARNT2:1.43549846964;NKX2-3_NKX2-5:1.42101295283;PRDM1:1.39733077072;CDC5L:1.39476494307;ZBTB6:1.38509168919;ONECUT1,2:1.37570069518;FOXQ1:1.36334384372;MTE{core}:1.34838863239;ADNP_IRX_SIX_ZHX:1.30608856519;NANOG:1.28879559036;HOX{A5,B5}:1.28458010595;FOXL1:1.2277971143;PAX8:1.22537341197;PAX4:1.18684779648;YY1:1.14980983836;RORA:1.12941210713;RREB1:1.12377182108;HOX{A4,D4}:1.07278007271;ZNF384:1.07222433845;LMO2:1.0717563904;HMGA1,2:1.04378870658;UFEwm:1.04248140319;KLF4:1.03278017049;RFX1:1.0243574644;REST:1.01233210283;TFAP2B:0.997837102235;T:0.975023021392;NR5A1,2:0.955853564746;PATZ1:0.95364474317;ZIC1..3:0.940387894624;SMAD1..7,9:0.938178267925;ZNF143:0.926307338212;EGR1..3:0.905817932271;NANOG{mouse}:0.881398443047;ATF2:0.875930719937;PAX6:0.84519784293;HES1:0.841302836828;CDX1,2,4:0.825802547249;DBP:0.778040786135;ZNF423:0.75917713901;GFI1B:0.753326771876;JUN:0.750145835221;NFY{A,B,C}:0.734856930422;HIC1:0.663169843487;TEF:0.651054348647;RFX2..5_RFXANK_RFXAP:0.64014219553;NR1H4:0.619405961568;NR3C1:0.616156434029;NHLH1,2:0.586234995121;PAX1,9:0.57396480278;FOXD3:0.572077769701;ATF5_CREB3:0.525658573181;GTF2I:0.488074753009;PAX5:0.430798944642;PBX1:0.368142196212;EP300:0.365779402298;GZF1:0.364210449427;SOX5:0.361981456467;NFE2L1:0.331824474666;ELK1,4_GABP{A,B1}:0.331124053886;ZBTB16:0.287333421953;MTF1:0.258976294789;ALX1:0.255126848533;NFIX:0.187600013568;STAT1,3:0.161976125091;MYFfamily:0.155490927664;HOXA9_MEIS1:0.142416336059;GTF2A1,2:0.104215969056;RBPJ:0.100175270179;POU1F1:0.0910056868262;GFI1:0.0835653094147;MAZ:0.0714267366403;STAT5{A,B}:0.0512770954916;MYB:0.0510574332778;E2F1..5:0.0500372498451;PITX1..3:0.0380741158433;CRX:0.0287247091879;FOX{F1,F2,J1}:-0.0050913946534;CREB1:-0.00589355373682;BPTF:-0.0539346688949;GCM1,2:-0.0598360210624;HBP1_HMGB_SSRP1_UBTF:-0.0638232720978;ARID5B:-0.0992673626425;HLF:-0.105683997274;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.144383443298;HIF1A:-0.145080160243;FOXP3:-0.149840927656;GATA4:-0.163442664851;EVI1:-0.188995601172;RXR{A,B,G}:-0.21236472322;TGIF1:-0.220705651906;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.240924522737;NKX2-1,4:-0.241643853422;CUX2:-0.247972815091;HSF1,2:-0.249705436557;HMX1:-0.256414808861;ZNF238:-0.301641606654;RUNX1..3:-0.335116851479;SPZ1:-0.35147056036;HAND1,2:-0.362646582752;TLX1..3_NFIC{dimer}:-0.405596714338;TOPORS:-0.467710983205;IKZF2:-0.467933457538;bHLH_family:-0.485705802243;NKX3-1:-0.509323335333;FOXP1:-0.518382404345;ATF4:-0.528579784333;ALX4:-0.531596253947;HNF4A_NR2F1,2:-0.534130009519;FOXA2:-0.542525369686;TFAP4:-0.55355611192;MAFB:-0.555302385384;SPIB:-0.555666325507;ESR1:-0.562189437246;MEF2{A,B,C,D}:-0.564598967516;NFIL3:-0.571624815776;SNAI1..3:-0.608836964518;AR:-0.618149474632;NKX3-2:-0.640384323794;ZEB1:-0.658431046426;HNF1A:-0.662890212055;XCPE1{core}:-0.662924410232;NFKB1_REL_RELA:-0.666515645419;IKZF1:-0.668723458842;FOX{I1,J2}:-0.675059299237;TAL1_TCF{3,4,12}:-0.675372873045;TBP:-0.675551689837;NKX2-2,8:-0.681538544396;SPI1:-0.684293026411;GATA6:-0.713775044313;MYOD1:-0.75070065417;AIRE:-0.753953572415;TFAP2{A,C}:-0.765316417889;TLX2:-0.789429931413;FOXN1:-0.79772690608;ESRRA:-0.800567460821;MYBL2:-0.80805445498;FOS_FOS{B,L1}_JUN{B,D}:-0.850320889456;SP1:-0.872655252271;PAX2:-0.874255131172;NR6A1:-0.880302087169;ELF1,2,4:-0.889861719999;BACH2:-0.946338868867;NFE2:-0.96120298556;TBX4,5:-0.977839139061;ZNF148:-1.00790116669;NFE2L2:-1.02107506558;GLI1..3:-1.02574208989;ETS1,2:-1.04052599003;DMAP1_NCOR{1,2}_SMARC:-1.04815495066;NFATC1..3:-1.07532371946;SREBF1,2:-1.08126463347;TP53:-1.08454427187;RXRA_VDR{dimer}:-1.1282858213;TEAD1:-1.14275154729;PDX1:-1.1581648507;FOX{D1,D2}:-1.26430314315;FOXO1,3,4:-1.34829590871;CEBPA,B_DDIT3:-1.39386816989;IRF1,2:-1.40338759244;EBF1:-1.42872681467;FOSL2:-1.5752958048;SRF:-1.64471509594;IRF7:-1.67228714076;STAT2,4,6:-1.77067521284;TFCP2:-1.84477171661;ATF6:-1.8725294765 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11644-122D6;search_select_hide=table117:11644-122D6 | |||
}} | }} |
Latest revision as of 18:13, 4 June 2020
Name: | Mouse Neurons - hippocampal, donor3 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs12110 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
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ExpandCAGE Accession numbers |
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ExpandDownload raw sequence, BAM & CTSS |
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs12110
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12110
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12110
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12110
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000117 (CNS neuron (sensu Vertebrata))
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
0002609 (neuron of cerebral cortex)
0002608 (hippocampal neuron)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0001954 (Ammon's horn)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0003022 (lobe parts of cerebral cortex)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0002421 (hippocampal formation)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0000349 (limbic system)
0002600 (limbic lobe)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000201 (hippocampal neuron sample)
0000203 (mouse neuron samples)
0000202 (mouse hippocampal neuron sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000337 (neuroblast (sensu Vertebrata))
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)