FFCP PHASE1:Mm9::chr11:87912705..87912756,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:87912705..87912756,+
|short_description=p1@Cuedc1
|description=CAGE_peak_1_at_Cuedc1_5end
|association_with_transcript=-35bp_to_ENSMUST00000133149_5end
|...") |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=103841 | |EntrezGene=103841 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-35bp_to_ENSMUST00000133149_5end | |||
|cluster_id=chr11:87912705..87912756,+ | |||
|description=CAGE_peak_1_at_Cuedc1_5end | |||
|id=chr11:87912705..87912756,+ | |||
|ontology_enrichment_celltype=CL:0000393!4.09e-11!39;CL:0000211!4.09e-11!39;CL:0000540!6.35e-11!33;CL:0000047!6.35e-11!33;CL:0000031!6.35e-11!33;CL:0000404!6.35e-11!33;CL:0002319!3.32e-10!43;CL:0000221!3.77e-10!44;CL:0000133!3.77e-10!44;CL:0000055!4.55e-10!50;CL:0000117!1.63e-08!23;CL:0000337!1.63e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.00e-11,39;CL:0000211,4.00e-11,39;CL:0000540,6.22e-11,33;CL:0000047,6.22e-11,33;CL:0000031,6.22e-11,33;CL:0000404,6.22e-11,33;CL:0002319,3.26e-10,43;CL:0000221,3.70e-10,44;CL:0000133,3.70e-10,44;CL:0000117,1.61e-08,23;CL:0000337,1.61e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!7.15e-19!102;UBERON:0000924!7.15e-19!102;UBERON:0006601!7.15e-19!102;UBERON:0001017!4.68e-17!73;UBERON:0005743!4.68e-17!73;UBERON:0000073!5.13e-16!75;UBERON:0001016!5.13e-16!75;UBERON:0002346!3.27e-15!71;UBERON:0003075!3.27e-15!71;UBERON:0007284!3.27e-15!71;UBERON:0000033!8.27e-14!63;UBERON:0001049!6.84e-13!52;UBERON:0005068!6.84e-13!52;UBERON:0006241!6.84e-13!52;UBERON:0007135!6.84e-13!52;UBERON:0003056!1.77e-11!49;UBERON:0004111!1.04e-10!122;UBERON:0000955!1.44e-10!50;UBERON:0006238!1.44e-10!50;UBERON:0002616!1.94e-10!49;UBERON:0003080!3.09e-09!40;UBERON:0002780!3.68e-09!39;UBERON:0001890!3.68e-09!39;UBERON:0006240!3.68e-09!39;UBERON:0000468!2.09e-08!333;UBERON:0000025!2.48e-08!114;UBERON:0002020!5.16e-08!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.87e-19,92;UBERON:0004121,4.34e-19,95;UBERON:0000924,4.34e-19,95;UBERON:0006601,4.34e-19,95;UBERON:0001017,4.52e-17,73;UBERON:0001016,4.97e-16,75;UBERON:0002346,1.01e-15,64;UBERON:0003075,1.01e-15,64;UBERON:0007284,1.01e-15,64;UBERON:0010371,2.55e-15,73;UBERON:0001049,6.67e-13,52;UBERON:0005068,6.67e-13,52;UBERON:0006241,6.67e-13,52;UBERON:0007135,6.67e-13,52;UBERON:0000073,3.77e-12,54;UBERON:0003056,1.74e-11,49;UBERON:0000955,5.06e-11,47;UBERON:0006238,5.06e-11,47;UBERON:0002616,6.72e-11,46;UBERON:0004111,1.12e-10,122;UBERON:0003080,3.04e-09,40;UBERON:0002780,3.61e-09,39;UBERON:0001890,3.61e-09,39;UBERON:0006240,3.61e-09,39;UBERON:0000025,2.68e-08,114;UBERON:0002020,5.09e-08,34 | |||
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| ||
|short_description=p1@Cuedc1 | |||
}} | }} |
Latest revision as of 22:32, 25 September 2015
Short description: | p1@Cuedc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cuedc1_5end |
Coexpression cluster: | NA |
Association with transcript: | -35bp_to_ENSMUST00000133149_5end |
EntrezGene: | Cuedc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.00e-11 | 39 |
electrically active cell | 4.00e-11 | 39 |
neuron | 6.22e-11 | 33 |
neuronal stem cell | 6.22e-11 | 33 |
neuroblast | 6.22e-11 | 33 |
electrically signaling cell | 6.22e-11 | 33 |
neural cell | 3.26e-10 | 43 |
ectodermal cell | 3.70e-10 | 44 |
neurectodermal cell | 3.70e-10 | 44 |
CNS neuron (sensu Vertebrata) | 1.61e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.61e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.87e-19 | 92 |
ectoderm-derived structure | 4.34e-19 | 95 |
ectoderm | 4.34e-19 | 95 |
presumptive ectoderm | 4.34e-19 | 95 |
central nervous system | 4.52e-17 | 73 |
nervous system | 4.97e-16 | 75 |
neurectoderm | 1.01e-15 | 64 |
neural plate | 1.01e-15 | 64 |
presumptive neural plate | 1.01e-15 | 64 |
ecto-epithelium | 2.55e-15 | 73 |
neural tube | 6.67e-13 | 52 |
neural rod | 6.67e-13 | 52 |
future spinal cord | 6.67e-13 | 52 |
neural keel | 6.67e-13 | 52 |
regional part of nervous system | 3.77e-12 | 54 |
pre-chordal neural plate | 1.74e-11 | 49 |
brain | 5.06e-11 | 47 |
future brain | 5.06e-11 | 47 |
regional part of brain | 6.72e-11 | 46 |
anatomical conduit | 1.12e-10 | 122 |
anterior neural tube | 3.04e-09 | 40 |
regional part of forebrain | 3.61e-09 | 39 |
forebrain | 3.61e-09 | 39 |
future forebrain | 3.61e-09 | 39 |
tube | 2.68e-08 | 114 |
gray matter | 5.09e-08 | 34 |