FF:10770-110F5: Difference between revisions

Latest revision as of 15:03, 3 June 2020

Name:	acute myeloid leukemia (FAB M5) cell line:P31/FUJ
Species:	Human (Homo sapiens)
Library ID:	CNhs13051
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	7
cell type	myeloid progenitor cell
cell line	P31/FUJ
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004999

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13051		CAGE		DRX007812		DRR008684

Accession ID Hg19

Library id		BAM		CTSS
CNhs13051		DRZ000109		DRZ001494

Accession ID Hg38

Library id		BAM		CTSS
CNhs13051		DRZ011459		DRZ012844

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.521
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00304
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.123
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.128
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.089
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.113
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.694
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.532
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0426
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.547
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.128
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.308
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0.128
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.227
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13051

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.45325e-4
MA0003.1	MA0003.1	0.616
MA0004.1	MA0004.1	0.393
MA0006.1	MA0006.1	0.693
MA0007.1	MA0007.1	0.851
MA0009.1	MA0009.1	0.121
MA0014.1	MA0014.1	0.563
MA0017.1	MA0017.1	0.00649
MA0018.2	MA0018.2	1.21026e-4
MA0019.1	MA0019.1	0.137
MA0024.1	MA0024.1	6.20184e-4
MA0025.1	MA0025.1	0.972
MA0027.1	MA0027.1	0.228
MA0028.1	MA0028.1	0.0503
MA0029.1	MA0029.1	0.443
MA0030.1	MA0030.1	7.97301e-4
MA0031.1	MA0031.1	0.0856
MA0035.2	MA0035.2	0.00425
MA0038.1	MA0038.1	0.961
MA0039.2	MA0039.2	0.825
MA0040.1	MA0040.1	0.799
MA0041.1	MA0041.1	0.647
MA0042.1	MA0042.1	0.85
MA0043.1	MA0043.1	0.467
MA0046.1	MA0046.1	0.221
MA0047.2	MA0047.2	0.419
MA0048.1	MA0048.1	0.237
MA0050.1	MA0050.1	0.0284
MA0051.1	MA0051.1	0.29
MA0052.1	MA0052.1	0.162
MA0055.1	MA0055.1	0.313
MA0057.1	MA0057.1	0.836
MA0058.1	MA0058.1	0.499
MA0059.1	MA0059.1	0.0532
MA0060.1	MA0060.1	5.25693e-11
MA0061.1	MA0061.1	0.345
MA0062.2	MA0062.2	5.41297e-5
MA0065.2	MA0065.2	0.0044
MA0066.1	MA0066.1	0.519
MA0067.1	MA0067.1	0.123
MA0068.1	MA0068.1	0.00284
MA0069.1	MA0069.1	0.997
MA0070.1	MA0070.1	0.989
MA0071.1	MA0071.1	0.0544
MA0072.1	MA0072.1	0.362
MA0073.1	MA0073.1	0.791
MA0074.1	MA0074.1	0.833
MA0076.1	MA0076.1	0.124
MA0077.1	MA0077.1	0.36
MA0078.1	MA0078.1	0.746
MA0079.2	MA0079.2	0.706
MA0080.2	MA0080.2	1.22159e-13
MA0081.1	MA0081.1	0.00303
MA0083.1	MA0083.1	0.484
MA0084.1	MA0084.1	0.314
MA0087.1	MA0087.1	0.0864
MA0088.1	MA0088.1	0.0143
MA0090.1	MA0090.1	1.77104e-5
MA0091.1	MA0091.1	0.539
MA0092.1	MA0092.1	0.688
MA0093.1	MA0093.1	0.514
MA0099.2	MA0099.2	0.0016
MA0100.1	MA0100.1	0.00576
MA0101.1	MA0101.1	0.276
MA0102.2	MA0102.2	0.143
MA0103.1	MA0103.1	0.533
MA0104.2	MA0104.2	0.0093
MA0105.1	MA0105.1	2.84876e-4
MA0106.1	MA0106.1	0.882
MA0107.1	MA0107.1	0.0836
MA0108.2	MA0108.2	4.3121e-5
MA0111.1	MA0111.1	0.138
MA0112.2	MA0112.2	0.0572
MA0113.1	MA0113.1	0.434
MA0114.1	MA0114.1	0.00826
MA0115.1	MA0115.1	0.031
MA0116.1	MA0116.1	5.09148e-5
MA0117.1	MA0117.1	0.865
MA0119.1	MA0119.1	0.326
MA0122.1	MA0122.1	0.465
MA0124.1	MA0124.1	0.793
MA0125.1	MA0125.1	0.427
MA0131.1	MA0131.1	0.445
MA0135.1	MA0135.1	0.934
MA0136.1	MA0136.1	4.696e-16
MA0137.2	MA0137.2	0.235
MA0138.2	MA0138.2	0.997
MA0139.1	MA0139.1	0.0337
MA0140.1	MA0140.1	1.94085e-5
MA0141.1	MA0141.1	0.0165
MA0142.1	MA0142.1	0.534
MA0143.1	MA0143.1	0.432
MA0144.1	MA0144.1	0.894
MA0145.1	MA0145.1	0.67
MA0146.1	MA0146.1	0.153
MA0147.1	MA0147.1	0.00299
MA0148.1	MA0148.1	0.373
MA0149.1	MA0149.1	0.156
MA0150.1	MA0150.1	0.348
MA0152.1	MA0152.1	0.396
MA0153.1	MA0153.1	0.0999
MA0154.1	MA0154.1	0.0161
MA0155.1	MA0155.1	0.783
MA0156.1	MA0156.1	5.70533e-9
MA0157.1	MA0157.1	0.977
MA0159.1	MA0159.1	0.237
MA0160.1	MA0160.1	0.0362
MA0162.1	MA0162.1	0.589
MA0163.1	MA0163.1	1.48063e-14
MA0164.1	MA0164.1	0.769
MA0258.1	MA0258.1	0.0855
MA0259.1	MA0259.1	0.0947

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13051

Novel motif	Logo	P-value
1	1	0.0285
10	10	0.0239
100	100	0.425
101	101	0.0503
102	102	0.454
103	103	0.077
104	104	0.911
105	105	0.932
106	106	0.384
107	107	0.986
108	108	0.896
109	109	0.035
11	11	0.026
110	110	0.169
111	111	0.0182
112	112	0.415
113	113	0.67
114	114	0.0641
115	115	0.625
116	116	0.319
117	117	0.0482
118	118	0.252
119	119	0.223
12	12	0.952
120	120	0.528
121	121	0.727
122	122	0.823
123	123	0.129
124	124	0.0501
125	125	0.046
126	126	0.0211
127	127	0.0954
128	128	0.547
129	129	0.218
13	13	0.0539
130	130	0.358
131	131	0.389
132	132	0.976
133	133	0.797
134	134	0.343
135	135	0.758
136	136	0.203
137	137	0.518
138	138	0.183
139	139	0.365
14	14	0.967
140	140	0.522
141	141	0.0891
142	142	0.603
143	143	0.0416
144	144	0.925
145	145	0.59
146	146	0.991
147	147	0.483
148	148	0.0133
149	149	0.33
15	15	0.229
150	150	0.513
151	151	0.785
152	152	0.237
153	153	0.381
154	154	0.941
155	155	0.11
156	156	0.678
157	157	0.39
158	158	0.907
159	159	0.92
16	16	0.602
160	160	0.336
161	161	0.049
162	162	0.7
163	163	0.434
164	164	0.505
165	165	0.478
166	166	0.441
167	167	0.547
168	168	0.679
169	169	0.417
17	17	0.659
18	18	0.572
19	19	0.355
2	2	0.864
20	20	0.93
21	21	0.381
22	22	0.782
23	23	0.583
24	24	0.341
25	25	0.297
26	26	0.0361
27	27	0.381
28	28	0.666
29	29	0.0175
3	3	0.05
30	30	0.267
31	31	0.953
32	32	0.409
33	33	0.297
34	34	0.992
35	35	0.248
36	36	0.0289
37	37	0.293
38	38	0.313
39	39	0.589
4	4	0.0148
40	40	0.115
41	41	0.381
42	42	0.182
43	43	0.234
44	44	0.234
45	45	0.997
46	46	0.0609
47	47	0.0141
48	48	0.0536
49	49	0.0848
5	5	0.5
50	50	0.97
51	51	0.704
52	52	0.509
53	53	0.548
54	54	0.914
55	55	0.855
56	56	0.723
57	57	0.17
58	58	0.11
59	59	0.365
6	6	0.381
60	60	0.421
61	61	0.221
62	62	0.0506
63	63	0.368
64	64	0.121
65	65	0.579
66	66	8.54933e-5
67	67	0.49
68	68	0.992
69	69	0.168
7	7	0.0845
70	70	0.337
71	71	0.0184
72	72	0.765
73	73	0.678
74	74	0.824
75	75	0.00538
76	76	0.476
77	77	0.947
78	78	0.169
79	79	0.646
8	8	0.0636
80	80	0.478
81	81	0.118
82	82	0.474
83	83	0.587
84	84	0.593
85	85	0.543
86	86	0.386
87	87	0.206
88	88	0.251
89	89	0.35
9	9	0.688
90	90	0.186
91	91	1
92	92	0.837
93	93	0.732
94	94	0.185
95	95	0.136
96	96	0.127
97	97	0.47
98	98	0.285
99	99	0.846

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13051

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007707
+|DRA_sample_Accession=CAGE@SAMD00004999
-|accession_numbers=CAGE;DRX007812;DRR008684;DRZ000109;DRZ001494
+|accession_numbers=CAGE;DRX007812;DRR008684;DRZ000109;DRZ001494;DRZ011459;DRZ012844
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.18!151.83!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!2.14!553.73!CEBPA;;chr7:115670804..115670825,-!p1@TFEC!2.12!130.88!TFEC;;chr2:68592406..68592424,+!p1@PLEK!2.12!130.19!PLEK;;chr7:27192185..27192209,-!p1@HOXA3!1.94!86.91!HOXA3;;chr1:92949331..92949377,-!p2@GFI1!1.93!84.85!GFI1;;chr6:135502408..135502459,+!p2@MYB!1.91!92.75!MYB;;chr12:54694758..54694805,-!p1@NFE2!1.89!91.72!NFE2;;chr7:137620684..137620711,-!p4@CREB3L2!1.88!74.88!CREB3L2;;chr6:135502501..135502546,+!p1@MYB!1.84!80.38!MYB;;chr7:50344289..50344323,+!p1@IKZF1!1.83!65.95!IKZF1;;chr7:27196217..27196246,-!p2@HOXA7!1.78!59.08!HOXA7;;chr1:92951607..92951661,-!p1@GFI1!1.75!55.65!GFI1;;chr7:27205136..27205164,-!p1@HOXA9!1.73!53.24!HOXA9;;chr7:137620650..137620677,-!p3@CREB3L2!1.72!51.18!CREB3L2;;chr1:92952473..92952489,-!p3@GFI1!1.63!41.56!GFI1;;chr19:13213662..13213686,-!p1@LYL1!1.60!55.99!LYL1;;chr7:27205106..27205134,-!p2@HOXA9!1.57!36.41!HOXA9;;chr13:72441315..72441454,-!p1@DACH1!1.56!69.39!DACH1;;chr7:27213893..27213954,-!p1@HOXA10!1.56!35.72!HOXA10;;chr16:85936412..85936431,+!p2@IRF8!1.56!35.04!IRF8;;chr16:85935894..85935904,+!p9@IRF8!1.42!25.08!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!1.42!25.08!OLIG1;;chr14:75988771..75988826,+!p1@BATF!1.40!31.60!BATF;;chr13:72440901..72440968,-!p4@DACH1!1.40!24.39!DACH1;;chr12:54694807..54694832,-!p3@NFE2!1.39!23.70!NFE2;;chr11:120107344..120107351,+!p1@POU2F3!1.38!27.82!POU2F3;;chr7:27205043..27205050,-!p5@HOXA9!1.37!22.67!HOXA9;;chr10:31288398..31288455,-!p2@ZNF438!1.35!24.73!ZNF438;;chr12:54778471..54778528,-!p1@ZNF385A!1.35!21.30!ZNF385A;;chr13:41593425..41593480,-!p1@ELF1!1.23!100.99!ELF1;;chr13:72441074..72441172,-!p2@DACH1!1.23!15.80!DACH1;;chr21:34442540..34442560,+!p2@OLIG1!1.22!15.46!OLIG1;;chr2:145277640..145277771,-!p1@ZEB2!1.19!189.61!ZEB2;;chr2:66662249..66662267,+!p2@MEIS1!1.19!54.96!MEIS1;;chr2:208031943..208031978,-!p5@KLF7!1.19!19.58!KLF7;;chr19:13213511..13213545,-!p2@LYL1!1.19!15.80!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.19!14.43!SPI1;;chr3:128212033..128212051,-!p1@GATA2!1.17!13.74!GATA2;;chr6:144385698..144385742,-!p2@PLAGL1!1.16!16.49!PLAGL1;;chr11:47400062..47400077,-!p2@SPI1!1.16!13.40!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.15!20.61!IRF5;;chr19:12163769..12163798,-!p1@ZNF878!1.14!16.49!ZNF878;;chr3:18486354..18486377,-!p2@SATB1!1.12!15.11!SATB1;;chr2:102091566..102091581,-!p1@RFX8!1.11!12.02!RFX8;;chr6:135502472..135502489,+!p3@MYB!1.11!12.02!MYB;;chr7:27183114..27183138,-!p3@HOXA5!1.11!12.02!HOXA5;;chr11:32457103..32457123,-!p3@WT1!1.09!11.34!WT1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.08!106.49!ZNF595;;chr19:12203100..12203132,+!p1@ZNF788!1.06!21.30!ZNF788;;chr16:54320646..54320672,-!p2@IRX3!1.03!15.11!IRX3;;chr10:94449703..94449718,+!p1@HHEX!1.02!37.44!HHEX;;chr12:11802547..11802560,+!p5@ETV6!1.02!13.05!ETV6;;chr5:88178983..88179012,-!p1@MEF2C!1.01!73.51!MEF2C;;chr1:92949505..92949543,-!p5@GFI1!1.01!9.27!GFI1;;chr6:135516877..135516900,+!p5@MYB!1.00!8.93!MYB;;chr7:27213872..27213886,-!p4@HOXA10!0.98!8.59!HOXA10;;chr19:45971246..45971265,+!p1@FOSB!0.97!158.01!FOSB;;chr11:32457075..32457095,-!p1@WT1!0.97!8.24!WT1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.24!PLEK;;chr6:135513595..135513617,+!p4@MYB!0.95!7.90!MYB;;chr11:47399947..47399961,-!p3@SPI1!0.95!7.90!SPI1;;chrX:147582130..147582147,+!p3@AFF2!0.95!7.90!AFF2;;chr5:176738887..176738934,-!p1@MXD3!0.94!53.24!MXD3;;chr6:126240380..126240430,+!p2@NCOA7!0.94!20.61!NCOA7;;chr2:66662281..66662308,+!p1@MEIS1!0.93!26.79!MEIS1;;chr10:94449675..94449694,+!p2@HHEX!0.93!20.95!HHEX;;chr2:172967621..172967637,-!p1@DLX2!0.91!19.58!DLX2;;chr13:72440772..72440847,-!p5@DACH1!0.91!7.21!DACH1;;chr2:60780607..60780624,-!p2@BCL11A!0.90!21.98!BCL11A;;chr16:54320675..54320715,-!p1@IRX3!0.90!15.46!IRX3;;chr14:75988831..75988847,+!p2@BATF!0.90!6.87!BATF;;chr16:54320617..54320643,-!p3@IRX3!0.89!8.93!IRX3;;chr11:19263160..19263176,-!p1@E2F8!0.88!7.90!E2F8;;chr11:47400032..47400043,-!p5@SPI1!0.88!6.53!SPI1;;chr11:128563948..128564003,+!p1@FLI1!0.87!82.44!FLI1;;chr10:22292591..22292606,-!p2@DNAJC1!0.87!10.65!DNAJC1;;chr20:50159198..50159299,-!p1@NFATC2!0.87!9.62!NFATC2;;chr19:48774586..48774670,+!p1@ZNF114!0.86!7.90!ZNF114;;chr2:100759010..100759035,-!p1@AFF3!0.86!6.18!AFF3;;chr16:85936600..85936623,+!p4@IRF8!0.86!6.18!IRF8;;chrY:21906594..21906622,-!p1@KDM5D!0.86!6.18!KDM5D;;chr16:68119324..68119364,+!p1@NFATC3!0.85!28.51!NFATC3;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.48!ETV4;;chr2:60780753..60780800,-!p1@BCL11A!0.84!31.26!BCL11A;;chr20:2673383..2673441,+!p1@EBF4!0.84!9.62!EBF4;;chr7:115670792..115670797,-!p2@TFEC!0.84!5.84!TFEC;;chr7:50343634..50343717,+!p2@IKZF1!0.84!5.84!IKZF1;;chr19:13213954..13214021,-!p4@LYL1!0.84!5.84!LYL1;;chr1:156470515..156470542,-!p2@MEF2D!0.83!32.29!MEF2D;;chr19:20011744..20011770,+!p1@ZNF93!0.82!23.36!ZNF93;;chr21:36421535..36421610,-!p2@RUNX1!0.82!21.30!RUNX1;;chr6:126240463..126240489,+!p6@NCOA7!0.81!6.18!NCOA7;;chr6:126240442..126240459,+!p4@NCOA7!0.80!6.87!NCOA7;;chr7:27196196..27196210,-!p5@HOXA7!0.79!5.15!HOXA7;;chr7:27205066..27205067,-!p7@HOXA9!0.79!5.15!HOXA9;;chr7:50344251..50344288,+!p3@IKZF1!0.79!5.15!IKZF1;;chr11:47400045..47400060,-!p6@SPI1!0.79!5.15!SPI1;;chr12:54694653..54694672,-!p2@NFE2!0.79!5.15!NFE2;;chr2:100759037..100759058,-!p2@AFF3!0.79!5.15!AFF3;;chr13:114238997..114239077,+!p1@TFDP1!0.78!275.49!TFDP1;;chr17:45810594..45810608,+!p1@TBX21!0.76!4.81!TBX21;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.81!ZFY;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.55!BRCA1;;chrX:101186981..101187030,-!p1@ZMAT1!0.74!16.14!ZMAT1;;chr10:31288370..31288393,-!p3@ZNF438!0.74!4.47!ZNF438;;chr11:19262421..19262455,-!p3@E2F8!0.74!4.47!E2F8;;chr11:19262461..19262476,-!p5@E2F8!0.74!4.47!E2F8;;chr6:135516909..135516925,+!p6@MYB!0.74!4.47!MYB;;chr21:36260980..36261011,-!p1@RUNX1!0.73!141.18!RUNX1;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.38!MYBL2;;chr6:20402102..20402152,+!p1@E2F3!0.73!19.58!E2F3;;chr7:150974206..150974255,-!p1@SMARCD3!0.71!28.85!SMARCD3;;chr7:64838786..64838809,+!p2@ZNF92!0.71!26.11!ZNF92;;chr2:60781201..60781258,-!p3@BCL11A!0.71!4.12!BCL11A;;chr3:27763807..27763822,-!p1@EOMES!0.71!4.12!EOMES;;chr3:63953435..63953499,+!p1@ATXN7!0.71!4.12!ATXN7;;chr7:101459230..101459243,+!p2@CUX1!0.69!21.64!CUX1;;chr2:43454125..43454146,-!p2@ZFP36L2!0.68!3.78!ZFP36L2;;chr11:32456894..32456906,-!p8@WT1!0.68!3.78!WT1;;chr19:58740449..58740456,+!p3@ZNF544!0.68!3.78!ZNF544;;chr7:99070499..99070523,+!p1@ZNF789!0.67!22.33!ZNF789;;chr5:88179017..88179046,-!p2@MEF2C!0.67!16.83!MEF2C;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.84!ETV4;;chr11:19263192..19263222,-!p2@E2F8!0.66!4.47!E2F8;;chr1:40105299..40105326,-!p1@HEYL!0.65!3.44!HEYL;;chr21:36421147..36421193,-!p10@RUNX1!0.65!3.44!RUNX1;;chr21:36421518..36421532,-!p11@RUNX1!0.65!3.44!RUNX1;;chr2:66662510..66662521,+!p6@MEIS1!0.65!3.44!MEIS1;;chr16:54320322..54320343,-!p7@IRX3!0.65!3.44!IRX3;;chr16:85936539..85936562,+!p3@IRF8!0.65!3.44!IRF8;;chr7:27205089..27205096,-!p4@HOXA9!0.65!3.44!HOXA9;;chr12:11802600..11802685,+!p1@ETV6!0.64!59.77!ETV6;;chr14:55493763..55493824,-!p1@WDHD1!0.64!29.88!WDHD1;;chr9:117160738..117160782,-!p2@AKNA!0.64!16.14!AKNA;;chr2:169312600..169312606,+!p2@CERS6!0.63!5.50!CERS6;;chr2:8822176..8822196,+!p1@ID2!0.62!537.24!ID2;;chr4:87928142..87928165,+!p5@AFF1!0.62!12.71!AFF1;;chr15:57511609..57511651,+!p2@TCF12!0.62!5.84!TCF12;;chr6:44355325..44355340,+!p4@CDC5L!0.62!3.78!CDC5L;;chr3:129158715..129158766,-!p2@MBD4!0.61!35.38!MBD4;;chr3:71630980..71631110,-!p3@FOXP1!0.61!12.37!FOXP1;;chr2:145277882..145277967,-!p3@ZEB2!0.61!5.84!ZEB2;;chr10:48355030..48355090,+!p1@ZNF488!0.61!4.12!ZNF488;;chr1:67390715..67390733,+!p7@MIER1!0.61!4.12!MIER1;;chr12:54694738..54694749,-!p5@NFE2!0.61!3.09!NFE2;;chr7:27183263..27183284,-!p2@HOXA5!0.61!3.09!HOXA5;;chr17:48046543..48046575,+!p2@DLX4!0.61!3.09!DLX4;;chr14:45722360..45722415,-!p1@MIS18BP1!0.60!56.68!MIS18BP1;;chr12:2986275..2986363,-!p1@FOXM1!0.60!36.41!FOXM1;;chr7:99156145..99156207,+!p5@ZNF655!0.60!11.68!ZNF655;;chr1:59249645..59249656,-!p4@JUN!0.60!8.59!JUN;;chr13:45011349..45011391,-!p4@TSC22D1!0.60!8.24!TSC22D1;;chr7:99156393..99156433,+!p6@ZNF655!0.60!7.56!ZNF655;;chrX:131623044..131623089,-!p1@MBNL3!0.59!14.08!MBNL3;;chr19:926055..926068,+!p2@ARID3A!0.59!7.21!ARID3A;;chr1:23857698..23857733,-!p1@E2F2!0.59!5.84!E2F2;;chr19:50168861..50168873,-!p3@IRF3!0.59!5.50!IRF3;;chr6:45390002..45390023,+!p6@RUNX2!0.59!5.50!RUNX2;;chr1:25256756..25256774,-!p1@RUNX3!0.58!5.84!RUNX3;;chr17:79881332..79881348,-!p3@MAFG!0.58!4.47!MAFG;;chr4:26321361..26321377,+!p6@RBPJ!0.58!3.78!RBPJ;;chrX:131622958..131622978,-!p3@MBNL3!0.58!3.78!MBNL3;;chr12:69753448..69753577,+!p1@YEATS4!0.57!66.98!YEATS4;;chr10:97889784..97889827,+!p1@ZNF518A!0.57!16.14!ZNF518A;;chr19:20011775..20011800,+!p2@ZNF93!0.57!5.50!ZNF93;;chr2:60778035..60778060,-!p4@BCL11A!0.57!3.44!BCL11A;;chr2:113977697..113977733,-!p6@PAX8!0.57!2.75!PAX8;;chr2:145277589..145277612,-!p12@ZEB2!0.57!2.75!ZEB2;;chrY:21906761..21906810,-!p2@KDM5D!0.57!2.75!KDM5D;;chr16:54320280..54320291,-!p9@IRX3!0.57!2.75!IRX3;;chr19:13213555..13213568,-!p5@LYL1!0.57!2.75!LYL1;;chr19:33864740..33864747,+!p4@CEBPG!0.57!2.75!CEBPG;;chr1:25291475..25291511,-!p2@RUNX3!0.57!2.75!RUNX3;;chr1:40105347..40105358,-!p2@HEYL!0.57!2.75!HEYL;;chr10:22292613..22292674,-!p1@DNAJC1!0.56!96.87!DNAJC1;;chr7:64126503..64126528,+!p1@ZNF107!0.56!23.01!ZNF107;;chrX:131623982..131624011,-!p6@MBNL3!0.56!4.12!MBNL3;;chr19:21950362..21950388,-!p1@ZNF100!0.55!28.85!ZNF100;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!0.55!20.27!ZNF700;;chr16:68118689..68118733,+!p3@NFATC3!0.55!7.56!NFATC3;;chr11:61520075..61520136,+!p1@C11orf9!0.55!6.18!C11orf9;;chr5:88179195..88179224,-!p3@MEF2C!0.55!4.47!MEF2C;;chr19:53039233..53039247,+!p2@ZNF808!0.55!4.12!ZNF808;;chr2:43453734..43453751,-!p1@ZFP36L2!0.54!339.38!ZFP36L2;;chr13:46542074..46542106,-!p6@ZC3H13!0.54!3.44!ZC3H13;;chr19:45579725..45579743,-!p1@ZNF296!0.53!13.40!ZNF296;;chr7:149470641..149470694,-!p1@ZNF467!0.53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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aP31%252fFUJ.CNhs13051.10770-110F5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10770-110F5
 |is_a=EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
 |library_id=CNhs13051
-|library_id_phase_based=1:CNhs13051
+|library_id_phase_based=2:CNhs13051
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10770
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10770
 |name=acute myeloid leukemia (FAB M5) cell line:P31/FUJ
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13051,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10770-110F5;search_select_hide=table117:FF:10770-110F5
 }}

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Latest revision as of 15:03, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0