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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008220
|DRA_sample_Accession=CAGE@SAMD00004884
|accession_numbers=CAGE;DRX008328;DRR009200;DRZ000625;DRZ002010
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004884
|accession_numbers=CAGE;DRX008328;DRR009200;DRZ000625;DRZ002010;DRZ011975;DRZ013360
|accession_numbers_RNASeq=sRNA-Seq;DRX037215;DRR041581;DRZ007223
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.19!171.18!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.85!70.33!IRF6;;chr17:7493405..7493419,-!p1@SOX15!1.78!58.71!SOX15;;chr3:189507432..189507459,+!p1@TP63!1.77!57.55!TP63;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.55!BNC1;;chr3:111314186..111314204,-!p1@ZBED2!1.71!50.28!ZBED2;;chr6:10415276..10415341,-!p2@TFAP2A!1.62!49.41!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!1.58!36.91!HES2;;chr17:7492684..7492778,-!p2@SOX15!1.51!64.81!SOX15;;chr13:73633131..73633149,+!p1@KLF5!1.44!274.36!KLF5;;chr5:2751762..2751784,-!p1@IRX2!1.37!22.67!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.17!TFAP2A;;chr2:19558373..19558392,-!p1@OSR1!1.34!55.51!OSR1;;chr12:54785074..54785122,-!p2@ZNF385A!1.27!26.74!ZNF385A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.27!17.73!TFCP2L1;;chr11:120107344..120107351,+!p1@POU2F3!1.26!20.93!POU2F3;;chr6:29648890..29648944,-!p1@ZFP57!1.22!15.69!ZFP57;;chr3:111314230..111314241,-!p2@ZBED2!1.22!15.69!ZBED2;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.40!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.20!25.87!DRAP1;;chr5:3595977..3595999,+!p1@IRX1!1.20!14.82!IRX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.17!13.95!TFAP2A;;chr8:135725369..135725388,-!p3@ZFAT!1.14!18.02!ZFAT;;chr11:34642612..34642646,+!p1@EHF!1.14!12.79!EHF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.11!11.92!ZBED1;;chr12:66218598..66218645,+!p2@HMGA2!1.10!54.06!HMGA2;;chr6:10419768..10419819,-!p6@TFAP2A!1.08!11.04!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.06!10.46!IRX2;;chr2:46524897..46524911,+!p2@EPAS1!1.04!27.90!EPAS1;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.27!DRAP1;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!11.04!ZNF385A;;chr15:101069113..101069169,-!p1@CERS3!1.01!9.30!CERS3;;chr17:8027418..8027432,-!p1@HES7!1.00!9.01!HES7;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!77.31!PPP1R13L;;chr11:47236584..47236679,+!p1@DDB2!0.96!91.26!DDB2;;chr11:65667884..65667895,-!p2@FOSL1!0.96!32.55!FOSL1;;chr5:3595934..3595957,+!p2@IRX1!0.96!8.14!IRX1;;chr9:129376201..129376225,+!p1@LMX1B!0.93!7.56!LMX1B;;chr8:49833948..49833973,-!p2@SNAI2!0.91!46.79!SNAI2;;chr12:48298765..48298783,-!p2@VDR!0.87!13.95!VDR;;chr8:102504651..102504683,+!p1@GRHL2!0.87!6.39!GRHL2;;chr15:83953373..83953386,-!p2@BNC1!0.87!6.39!BNC1;;chr20:22565185..22565223,-!p3@FOXA2!0.87!6.39!FOXA2;;chr11:65667846..65667868,-!p1@FOSL1!0.86!174.09!FOSL1;;chr12:54332608..54332636,+!p1@HOXC13!0.85!6.10!HOXC13;;chr8:128748308..128748324,+!p2@MYC!0.84!174.96!MYC;;chr8:49833978..49833996,-!p1@SNAI2!0.83!128.46!SNAI2;;chr17:41623692..41623715,-!p1@ETV4!0.79!23.83!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.85!HMGA2;;chr4:299227..299272,-!p1@ZNF732!0.79!5.23!ZNF732;;chr13:73636516..73636532,+!p3@KLF5!0.78!5.81!KLF5;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.41!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.43!FOXD1;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr17:45928521..45928539,-!p1@SP6!0.77!4.94!SP6;;chr1:209979375..209979386,-!p4@IRF6!0.77!4.94!IRF6;;chr20:55205825..55205847,+!p2@TFAP2C!0.77!4.94!TFAP2C;;chr11:65687362..65687436,+!p3@DRAP1!0.75!23.25!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!0.75!4.65!HOXC8;;chr1:209979449..209979460,-!p3@IRF6!0.75!4.65!IRF6;;chr18:3447536..3447542,+!p23@TGIF1!0.75!4.65!TGIF1;;chr5:3595961..3595975,+!p3@IRX1!0.75!4.65!IRX1;;chr8:10588010..10588030,-!p1@SOX7!0.75!4.65!SOX7;;chr3:189507460..189507471,+!p3@TP63!0.75!4.65!TP63;;chr4:206390..206444,+!p1@ZNF876P!0.74!8.43!ZNF876P;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.92!HMGA2;;chr5:1887070..1887114,-!p1@IRX4!0.73!4.36!IRX4;;chr1:158979792..158979814,+!p2@IFI16!0.72!45.34!IFI16;;chr12:66218183..66218209,+!p4@HMGA2!0.72!8.72!HMGA2;;chr3:193853927..193853944,+!p1@HES1!0.71!153.45!HES1;;chr10:8096772..8096787,+!p2@GATA3!0.71!4.94!GATA3;;chr2:239756671..239756732,+!p1@TWIST2!0.70!14.24!TWIST2;;chr7:19157043..19157088,-!p2@TWIST1!0.70!11.04!TWIST1;;chr17:45928443..45928473,-!p2@SP6!0.70!4.07!SP6;;chr10:135122868..135122893,+!p3@ZNF511!0.70!4.07!ZNF511;;chr12:54447219..54447237,+!p6@HOXC4!0.70!4.07!HOXC4;;chr20:22564895..22564910,-!p1@FOXA2!0.70!4.07!FOXA2;;chr17:70117153..70117174,+!p1@SOX9!0.69!45.92!SOX9;;chr17:38256799..38256815,-!p3@NR1D1!0.69!7.56!NR1D1;;chr17:41622925..41622976,-!p3@ETV4!0.69!6.10!ETV4;;chr12:48298785..48298828,-!p1@VDR!0.68!22.67!VDR;;chr20:55204351..55204377,+!p1@TFAP2C!0.68!4.94!TFAP2C;;chr12:54393880..54393962,+!p1@HOXC9!0.68!3.78!HOXC9;;chr2:113994526..113994556,-!p3@PAX8!0.68!3.78!PAX8;;chr16:54320101..54320125,-!p4@IRX3!0.67!5.52!IRX3;;chr12:54447599..54447630,+!p3@HOXC4!0.67!4.65!HOXC4;;chr13:73636252..73636307,+!p2@KLF5!0.67!4.36!KLF5;;chr17:38256822..38256851,-!p1@NR1D1!0.66!32.84!NR1D1;;chr13:41593425..41593480,-!p1@ELF1!0.66!26.45!ELF1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.65!3.49!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.65!3.49!HOXC6;;chr6:28048343..28048354,+!p1@ZNF165!0.65!3.49!ZNF165;;chr17:41277372..41277418,-!p1@BRCA1!0.64!13.95!BRCA1;;chr12:80084737..80084763,-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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 40: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg38.nobarcode.ctss.bed.gz
|id=FF:11350-117G9
|id=FF:11350-117G9
|is_a=EFO:0002091;;FF:0000088
|is_a=EFO:0002091;;FF:0000088
|is_obsolete=
|is_obsolete=
|library_id=CNhs11382
|library_id=CNhs11382
|library_id_phase_based=1:CNhs11382
|library_id_phase_based=2:CNhs11382
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11350
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.AGTTCC.11350
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11350
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.AGTTCC.11350
|name=Mammary Epithelial Cell, donor2
|name=Mammary Epithelial Cell, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 64:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11382,LSID771,release012,COMPLETED
|profile_hcage=CNhs11382,LSID771,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 89: Line 105:
|top_motifs=TP53:2.66242299691;TBX4,5:2.0235799271;VSX1,2:1.57039118423;ZEB1:1.53203121679;PPARG:1.35656265651;SNAI1..3:1.31241591214;POU1F1:1.29883764511;TEF:1.20445382798;FOXQ1:1.18607672484;FOX{I1,J2}:1.11238362964;NR3C1:1.0455301783;CDC5L:0.944877474062;PDX1:0.933441986302;NKX2-3_NKX2-5:0.918985900522;ONECUT1,2:0.918757549734;HOX{A4,D4}:0.905109301005;NKX2-2,8:0.763815744519;bHLH_family:0.73842118285;TEAD1:0.718836920951;ADNP_IRX_SIX_ZHX:0.713442853219;NKX3-2:0.712083667636;STAT5{A,B}:0.701415918627;E2F1..5:0.664452874373;FOXM1:0.6565504724;GFI1:0.570673472899;MYB:0.568765290212;NKX2-1,4:0.558460755395;HOX{A5,B5}:0.55394205832;FOS_FOS{B,L1}_JUN{B,D}:0.52440553891;TFDP1:0.523611644636;BACH2:0.469779658016;TBP:0.468172137329;EN1,2:0.429160586931;XCPE1{core}:0.426835931291;NFIL3:0.414793159298;NR5A1,2:0.413488260679;NFIX:0.407857470887;NR1H4:0.393963554862;UFEwm:0.389819543845;ELK1,4_GABP{A,B1}:0.388335458762;PAX8:0.360869747197;KLF4:0.360556345307;POU2F1..3:0.338161455799;NANOG:0.317264917404;ZNF148:0.312787042918;FOSL2:0.27866799917;ELF1,2,4:0.274350181848;MYOD1:0.268413195989;T:0.266712305569;NRF1:0.252629810355;PAX1,9:0.241797917957;ZNF143:0.239344408351;SP1:0.222852984232;SOX17:0.219076541836;CEBPA,B_DDIT3:0.205842603451;NFY{A,B,C}:0.202662877625;OCT4_SOX2{dimer}:0.153225566559;HIF1A:0.142106472152;CREB1:0.135389936045;LMO2:0.113389475131;EVI1:0.112457087013;POU6F1:0.109091652996;ARID5B:0.0681298842513;LHX3,4:0.0613737498055;ZBTB6:0.0478782432477;AR:0.0475838226951;HES1:0.0331999322323;EP300:0.0274608067735;HMGA1,2:0.0214952084976;GZF1:0.0202720249877;ZIC1..3:0.0100969900469;RBPJ:-0.0100998657616;MYBL2:-0.013633113498;SMAD1..7,9:-0.0137989360105;HLF:-0.0204141960369;FOXO1,3,4:-0.0250469462102;CRX:-0.0265892232955;HAND1,2:-0.0351883411336;NFE2:-0.0357073464208;MTF1:-0.0386317929278;HSF1,2:-0.0735744097512;YY1:-0.0861325129472;HNF1A:-0.0876503782414;LEF1_TCF7_TCF7L1,2:-0.0906084526263;GLI1..3:-0.104008711476;PAX2:-0.122267788513;ZNF238:-0.129610567678;GFI1B:-0.14237135047;ATF4:-0.142964417468;POU5F1:-0.147437679653;PAX5:-0.161958542796;FOXN1:-0.16524111111;MAZ:-0.174832182651;IKZF1:-0.175374747254;ATF5_CREB3:-0.176117810316;PAX4:-0.184291997065;TLX1..3_NFIC{dimer}:-0.184468099289;AHR_ARNT_ARNT2:-0.184616160511;HNF4A_NR2F1,2:-0.200672671897;TOPORS:-0.211327251557;FOXL1:-0.219989399622;SPI1:-0.228132239519;ZBTB16:-0.229368182758;REST:-0.230864803817;FOX{F1,F2,J1}:-0.232742969715;AIRE:-0.236608260967;MTE{core}:-0.237792338647;TFCP2:-0.240372134354;RXR{A,B,G}:-0.2421744772;FOXA2:-0.244154088636;NFKB1_REL_RELA:-0.250270650448;PBX1:-0.261191541583;DBP:-0.264844637297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.269451978501;GATA4:-0.273759913228;ALX4:-0.286711770994;IRF7:-0.288128232753;NR6A1:-0.289861037261;TLX2:-0.297266507585;POU3F1..4:-0.307463689296;TFAP2{A,C}:-0.307490872251;CUX2:-0.310085719163;RFX2..5_RFXANK_RFXAP:-0.327305412597;GATA6:-0.328873802223;ETS1,2:-0.346635672502;NKX3-1:-0.35432757376;ZNF423:-0.359359682882;ALX1:-0.359478405224;GCM1,2:-0.375831833299;NHLH1,2:-0.376635888253;RFX1:-0.379442619691;SPIB:-0.379625717053;PAX6:-0.387037415633;GTF2A1,2:-0.389401704947;SOX2:-0.403794735895;NFATC1..3:-0.412085497099;TFAP4:-0.428356391358;ATF2:-0.430285093931;FOXD3:-0.435295514571;EBF1:-0.444276941397;GTF2I:-0.444468193784;EGR1..3:-0.449100791722;IKZF2:-0.455273617498;JUN:-0.455765054371;MED-1{core}:-0.470168588105;RUNX1..3:-0.479553106156;FOXP3:-0.481219124943;PRDM1:-0.483366277903;ESR1:-0.485794142058;SRF:-0.496306747195;NFE2L2:-0.515572211358;BREu{core}:-0.526693747629;SOX{8,9,10}:-0.534045852211;ZNF384:-0.535348128461;PRRX1,2:-0.550725232061;MYFfamily:-0.553688349763;HIC1:-0.554294787209;ZFP161:-0.566443261969;ESRRA:-0.595520433558;BPTF:-0.600850937465;STAT2,4,6:-0.614814823743;DMAP1_NCOR{1,2}_SMARC:-0.615265125426;HOX{A6,A7,B6,B7}:-0.61832966526;CDX1,2,4:-0.645400445868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.680337780616;MEF2{A,B,C,D}:-0.716123147577;PITX1..3:-0.730008292505;FOXP1:-0.742855760698;SPZ1:-0.770163558304;RXRA_VDR{dimer}:-0.788220460885;RREB1:-0.792967916556;TGIF1:-0.836664285343;STAT1,3:-0.840719861333;FOX{D1,D2}:-0.849577893788;MAFB:-0.851482654505;NFE2L1:-0.867017321317;TFAP2B:-0.869280130875;PAX3,7:-0.870842164644;NKX6-1,2:-0.87531387398;IRF1,2:-0.876951364267;HOXA9_MEIS1:-0.966233936492;RORA:-0.986901077283;HMX1:-1.03769330659;ATF6:-1.10991258099;SREBF1,2:-1.1130897817;TAL1_TCF{3,4,12}:-1.11706781707;SOX5:-1.11951888996;PATZ1:-1.14479271182;NANOG{mouse}:-1.21392456561;MZF1:-1.22102058319;HBP1_HMGB_SSRP1_UBTF:-1.28303711454;XBP1:-1.52606127711
|top_motifs=TP53:2.66242299691;TBX4,5:2.0235799271;VSX1,2:1.57039118423;ZEB1:1.53203121679;PPARG:1.35656265651;SNAI1..3:1.31241591214;POU1F1:1.29883764511;TEF:1.20445382798;FOXQ1:1.18607672484;FOX{I1,J2}:1.11238362964;NR3C1:1.0455301783;CDC5L:0.944877474062;PDX1:0.933441986302;NKX2-3_NKX2-5:0.918985900522;ONECUT1,2:0.918757549734;HOX{A4,D4}:0.905109301005;NKX2-2,8:0.763815744519;bHLH_family:0.73842118285;TEAD1:0.718836920951;ADNP_IRX_SIX_ZHX:0.713442853219;NKX3-2:0.712083667636;STAT5{A,B}:0.701415918627;E2F1..5:0.664452874373;FOXM1:0.6565504724;GFI1:0.570673472899;MYB:0.568765290212;NKX2-1,4:0.558460755395;HOX{A5,B5}:0.55394205832;FOS_FOS{B,L1}_JUN{B,D}:0.52440553891;TFDP1:0.523611644636;BACH2:0.469779658016;TBP:0.468172137329;EN1,2:0.429160586931;XCPE1{core}:0.426835931291;NFIL3:0.414793159298;NR5A1,2:0.413488260679;NFIX:0.407857470887;NR1H4:0.393963554862;UFEwm:0.389819543845;ELK1,4_GABP{A,B1}:0.388335458762;PAX8:0.360869747197;KLF4:0.360556345307;POU2F1..3:0.338161455799;NANOG:0.317264917404;ZNF148:0.312787042918;FOSL2:0.27866799917;ELF1,2,4:0.274350181848;MYOD1:0.268413195989;T:0.266712305569;NRF1:0.252629810355;PAX1,9:0.241797917957;ZNF143:0.239344408351;SP1:0.222852984232;SOX17:0.219076541836;CEBPA,B_DDIT3:0.205842603451;NFY{A,B,C}:0.202662877625;OCT4_SOX2{dimer}:0.153225566559;HIF1A:0.142106472152;CREB1:0.135389936045;LMO2:0.113389475131;EVI1:0.112457087013;POU6F1:0.109091652996;ARID5B:0.0681298842513;LHX3,4:0.0613737498055;ZBTB6:0.0478782432477;AR:0.0475838226951;HES1:0.0331999322323;EP300:0.0274608067735;HMGA1,2:0.0214952084976;GZF1:0.0202720249877;ZIC1..3:0.0100969900469;RBPJ:-0.0100998657616;MYBL2:-0.013633113498;SMAD1..7,9:-0.0137989360105;HLF:-0.0204141960369;FOXO1,3,4:-0.0250469462102;CRX:-0.0265892232955;HAND1,2:-0.0351883411336;NFE2:-0.0357073464208;MTF1:-0.0386317929278;HSF1,2:-0.0735744097512;YY1:-0.0861325129472;HNF1A:-0.0876503782414;LEF1_TCF7_TCF7L1,2:-0.0906084526263;GLI1..3:-0.104008711476;PAX2:-0.122267788513;ZNF238:-0.129610567678;GFI1B:-0.14237135047;ATF4:-0.142964417468;POU5F1:-0.147437679653;PAX5:-0.161958542796;FOXN1:-0.16524111111;MAZ:-0.174832182651;IKZF1:-0.175374747254;ATF5_CREB3:-0.176117810316;PAX4:-0.184291997065;TLX1..3_NFIC{dimer}:-0.184468099289;AHR_ARNT_ARNT2:-0.184616160511;HNF4A_NR2F1,2:-0.200672671897;TOPORS:-0.211327251557;FOXL1:-0.219989399622;SPI1:-0.228132239519;ZBTB16:-0.229368182758;REST:-0.230864803817;FOX{F1,F2,J1}:-0.232742969715;AIRE:-0.236608260967;MTE{core}:-0.237792338647;TFCP2:-0.240372134354;RXR{A,B,G}:-0.2421744772;FOXA2:-0.244154088636;NFKB1_REL_RELA:-0.250270650448;PBX1:-0.261191541583;DBP:-0.264844637297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.269451978501;GATA4:-0.273759913228;ALX4:-0.286711770994;IRF7:-0.288128232753;NR6A1:-0.289861037261;TLX2:-0.297266507585;POU3F1..4:-0.307463689296;TFAP2{A,C}:-0.307490872251;CUX2:-0.310085719163;RFX2..5_RFXANK_RFXAP:-0.327305412597;GATA6:-0.328873802223;ETS1,2:-0.346635672502;NKX3-1:-0.35432757376;ZNF423:-0.359359682882;ALX1:-0.359478405224;GCM1,2:-0.375831833299;NHLH1,2:-0.376635888253;RFX1:-0.379442619691;SPIB:-0.379625717053;PAX6:-0.387037415633;GTF2A1,2:-0.389401704947;SOX2:-0.403794735895;NFATC1..3:-0.412085497099;TFAP4:-0.428356391358;ATF2:-0.430285093931;FOXD3:-0.435295514571;EBF1:-0.444276941397;GTF2I:-0.444468193784;EGR1..3:-0.449100791722;IKZF2:-0.455273617498;JUN:-0.455765054371;MED-1{core}:-0.470168588105;RUNX1..3:-0.479553106156;FOXP3:-0.481219124943;PRDM1:-0.483366277903;ESR1:-0.485794142058;SRF:-0.496306747195;NFE2L2:-0.515572211358;BREu{core}:-0.526693747629;SOX{8,9,10}:-0.534045852211;ZNF384:-0.535348128461;PRRX1,2:-0.550725232061;MYFfamily:-0.553688349763;HIC1:-0.554294787209;ZFP161:-0.566443261969;ESRRA:-0.595520433558;BPTF:-0.600850937465;STAT2,4,6:-0.614814823743;DMAP1_NCOR{1,2}_SMARC:-0.615265125426;HOX{A6,A7,B6,B7}:-0.61832966526;CDX1,2,4:-0.645400445868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.680337780616;MEF2{A,B,C,D}:-0.716123147577;PITX1..3:-0.730008292505;FOXP1:-0.742855760698;SPZ1:-0.770163558304;RXRA_VDR{dimer}:-0.788220460885;RREB1:-0.792967916556;TGIF1:-0.836664285343;STAT1,3:-0.840719861333;FOX{D1,D2}:-0.849577893788;MAFB:-0.851482654505;NFE2L1:-0.867017321317;TFAP2B:-0.869280130875;PAX3,7:-0.870842164644;NKX6-1,2:-0.87531387398;IRF1,2:-0.876951364267;HOXA9_MEIS1:-0.966233936492;RORA:-0.986901077283;HMX1:-1.03769330659;ATF6:-1.10991258099;SREBF1,2:-1.1130897817;TAL1_TCF{3,4,12}:-1.11706781707;SOX5:-1.11951888996;PATZ1:-1.14479271182;NANOG{mouse}:-1.21392456561;MZF1:-1.22102058319;HBP1_HMGB_SSRP1_UBTF:-1.28303711454;XBP1:-1.52606127711
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11350-117G9;search_select_hide=table117:FF:11350-117G9
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Mammary Epithelial Cell, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11382
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage28 years old adult
sexfemale
age28
cell typemammary gland epithelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2049
catalog numberCA830-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004884
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11382 CAGE DRX008328 DRR009200
Accession ID Hg19

Library idBAMCTSS
CNhs11382 DRZ000625 DRZ002010
Accession ID Hg38

Library idBAMCTSS
CNhs11382 DRZ011975 DRZ013360
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004884
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.AGTTCC sRNA-Seq DRX037215 DRR041581
Accession ID Hg19

Library idBAMCTSS
SRhi10013.AGTTCC DRZ007223


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.106
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.478
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.272
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.107
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0368
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.234
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.623
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.322
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.272
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.335
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.404
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.111
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.347
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11382

Jaspar motifP-value
MA0002.20.354
MA0003.10.461
MA0004.10.273
MA0006.10.0869
MA0007.10.381
MA0009.10.13
MA0014.10.0975
MA0017.10.891
MA0018.20.0078
MA0019.10.914
MA0024.10.00191
MA0025.10.514
MA0027.10.853
MA0028.18.47295e-4
MA0029.10.462
MA0030.10.223
MA0031.10.248
MA0035.20.232
MA0038.10.543
MA0039.20.00102
MA0040.10.35
MA0041.10.724
MA0042.10.806
MA0043.10.304
MA0046.10.642
MA0047.20.389
MA0048.10.433
MA0050.11.16476e-8
MA0051.13.68107e-5
MA0052.10.0125
MA0055.10.00514
MA0057.10.00714
MA0058.10.019
MA0059.10.46
MA0060.10.26
MA0061.10.248
MA0062.20.0215
MA0065.20.277
MA0066.10.643
MA0067.10.0163
MA0068.19.64734e-4
MA0069.10.22
MA0070.10.601
MA0071.10.402
MA0072.10.805
MA0073.10.789
MA0074.10.616
MA0076.10.0265
MA0077.10.61
MA0078.10.599
MA0079.20.776
MA0080.25.82392e-5
MA0081.10.521
MA0083.10.044
MA0084.10.28
MA0087.10.296
MA0088.10.261
MA0090.10.00571
MA0091.10.154
MA0092.10.401
MA0093.10.186
MA0099.25.5783e-6
MA0100.10.325
MA0101.10.278
MA0102.20.0686
MA0103.12.45449e-6
MA0104.20.259
MA0105.10.797
MA0106.14.53596e-20
MA0107.10.103
MA0108.20.00215
MA0111.10.85
MA0112.20.646
MA0113.10.938
MA0114.10.607
MA0115.10.973
MA0116.10.527
MA0117.10.409
MA0119.10.347
MA0122.10.669
MA0124.10.563
MA0125.10.0577
MA0131.10.157
MA0135.10.287
MA0136.10.2
MA0137.20.131
MA0138.20.585
MA0139.10.447
MA0140.10.459
MA0141.10.326
MA0142.10.0761
MA0143.10.302
MA0144.10.756
MA0145.10.105
MA0146.10.52
MA0147.10.143
MA0148.10.286
MA0149.10.0233
MA0150.10.818
MA0152.10.507
MA0153.10.694
MA0154.10.945
MA0155.10.0623
MA0156.10.459
MA0157.10.0477
MA0159.10.653
MA0160.10.685
MA0162.10.572
MA0163.10.553
MA0164.10.837
MA0258.10.225
MA0259.10.221



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11382

Novel motifP-value
10.455
100.884
1000.591
1010.195
1020.194
1030.0699
1040.868
1050.709
1060.547
1070.245
1080.722
1092.78611e-4
110.73
1100.23
1110.0359
1120.834
1130.0281
1140.545
1150.846
1160.352
1170.927
1180.555
1190.476
120.703
1200.0182
1210.972
1220.223
1230.345
1240.056
1250.429
1260.403
1270.059
1280.285
1290.14
130.0406
1300.89
1310.272
1320.162
1330.0171
1340.236
1350.756
1360.0163
1370.264
1380.204
1390.0775
140.608
1400.822
1410.225
1420.507
1430.512
1440.0424
1450.999
1460.305
1470.222
1480.409
1490.243
150.915
1500.453
1510.455
1520.137
1530.738
1540.73
1550.82
1560.586
1570.531
1580.0439
1590.519
160.00388
1600.472
1610.874
1620.501
1630.221
1640.492
1650.114
1660.0678
1670.81
1680.284
1690.0933
170.521
180.321
190.744
20.447
200.714
210.805
220.839
230.897
240.0031
250.501
260.956
270.747
280.312
290.228
30.951
300.0534
310.94
320.17
330.0618
340.181
350.0569
360.563
370.482
380.401
390.495
40.888
400.244
410.582
420.61
430.67
440.464
450.587
460.995
470.376
480.09
490.366
50.614
500.301
511
520.887
530.189
540.928
550.567
560.498
570.375
580.876
590.86
60.75
600.457
610.414
620.517
630.194
640.971
650.976
660.0811
670.938
680.314
690.375
70.451
700.677
710.149
720.976
730.00836
740.552
750.133
760.834
770.619
780.146
790.0977
80.655
800.878
810.857
820.503
830.442
840.0802
850.137
860.331
870.00462
880.867
890.0196
90.264
900.685
910.933
920.356
930.596
940.492
950.00395
960.736
970.455
980.736
990.0405



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11382


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000088 (human mammary epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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