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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005723
|DRA_sample_Accession=CAGE@SAMD00005723
|accession_numbers=CAGE;DRX008338;DRR009210;DRZ000635;DRZ002020
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005723
|accession_numbers=CAGE;DRX008338;DRR009210;DRZ000635;DRZ002020;DRZ011985;DRZ013370
|accession_numbers_RNASeq=sRNA-Seq;DRX037149;DRR041515;DRZ007157
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0002567
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0002567
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr22:38380543..38380569,-!p1@SOX10!2.88!749.84!SOX10;;chr3:69985734..69985749,+!p2@MITF!2.25!178.77!MITF;;chr19:3574330..3574393,+!p2@HMG20B!2.15!138.66!HMG20B;;chr6:391743..391759,+!p1@IRF4!2.12!130.64!IRF4;;chr2:223163706..223163730,-!p1@PAX3!2.09!121.85!PAX3;;chr6:10415276..10415341,-!p2@TFAP2A!2.07!140.19!TFAP2A;;chr19:3574157..3574180,+!p4@HMG20B!1.98!93.97!HMG20B;;chr6:10412600..10412637,-!p1@TFAP2A!1.93!137.52!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.86!72.20!TFAP2A;;chr19:3574400..3574430,+!p6@HMG20B!1.70!49.66!HMG20B;;chr15:42749722..42749739,-!p2@ZFP106!1.68!82.13!ZFP106;;chr1:25256756..25256774,-!p1@RUNX3!1.65!80.22!RUNX3;;chr17:59477233..59477263,+!p1@TBX2!1.52!96.64!TBX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.47!32.47!TFAP2A;;chr9:102584262..102584276,+!p1@NR4A3!1.45!59.21!NR4A3;;chr17:59477275..59477286,+!p3@TBX2!1.44!34.76!TBX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.42!31.71!TFAP2C;;chr8:72756637..72756664,-!p3@MSC!1.39!26.36!MSC;;chr6:10412576..10412599,-!p5@TFAP2A!1.31!19.48!TFAP2A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.28!17.95!HOXC5;;chr5:321810..321877,+!p1@AHRR!1.24!51.57!AHRR;;chr1:63788229..63788250,+!p1@FOXD3!1.24!16.43!FOXD3;;chr17:46806067..46806097,-!p1@HOXB13!1.22!15.66!HOXB13;;chr6:10415263..10415274,-!p8@TFAP2A!1.21!15.28!TFAP2A;;chr17:46688334..46688385,-!p1@HOXB7!1.18!20.25!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!1.18!17.19!HOXC4;;chr17:46806035..46806059,-!p2@HOXB13!1.17!13.75!HOXB13;;chr2:239148671..239148686,-!p1@HES6!1.16!49.66!HES6;;chr17:8027418..8027432,-!p1@HES7!1.16!13.37!HES7;;chr13:46626764..46626775,-!p16@ZC3H13!1.16!13.37!ZC3H13;;chr8:72756267..72756296,-!p4@MSC!1.15!19.48!MSC;;chr12:52431016..52431071,+!p4@NR4A1!1.15!15.28!NR4A1;;chr12:54393880..54393962,+!p1@HOXC9!1.15!12.99!HOXC9;;chr3:69985792..69985803,+!p7@MITF!1.12!12.22!MITF;;chr6:1389789..1389821,+!p1@FOXF2!1.10!16.04!FOXF2;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.10!11.46!EN2;;chr12:52445218..52445237,+!p1@NR4A1!1.09!142.10!NR4A1;;chr8:22550982..22550999,-!p1@EGR3!1.09!32.09!EGR3;;chr2:145277640..145277771,-!p1@ZEB2!1.08!148.21!ZEB2;;chr17:59477197..59477212,+!p2@TBX2!1.08!19.10!TBX2;;chr19:3572925..3573014,+!p1@HMG20B!1.06!310.94!HMG20B;;chr9:102584159..102584174,+!p2@NR4A3!1.04!18.34!NR4A3;;chr11:125034640..125034655,+!p1@PKNOX2!1.04!9.93!PKNOX2;;chr13:46626794..46626801,-!p17@ZC3H13!1.04!9.93!ZC3H13;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.17!ALX1;;chr10:35484053..35484076,+!p1@CREM!1.00!22.92!CREM;;chr8:49833948..49833973,-!p2@SNAI2!0.99!57.68!SNAI2;;chr12:53614115..53614154,-!p1@RARG!0.99!48.51!RARG;;chr8:72756063..72756125,-!p1@MSC!0.99!17.95!MSC;;chr3:185826855..185826911,-!p1@ETV5!0.98!238.74!ETV5;;chr9:102584128..102584144,+!p3@NR4A3!0.98!16.81!NR4A3;;chr9:102584278..102584285,+!p5@NR4A3!0.96!8.02!NR4A3;;chr19:3574468..3574478,+!p19@HMG20B!0.96!8.02!HMG20B;;chr6:34204973..34204990,+!p4@HMGA1!0.95!109.25!HMGA1;;chr2:176994408..176994492,+!p1@HOXD8!0.94!7.64!HOXD8;;chr8:128748308..128748324,+!p2@MYC!0.93!218.12!MYC;;chr8:49833978..49833996,-!p1@SNAI2!0.93!160.82!SNAI2;;chr8:72756667..72756736,-!p2@MSC!0.93!11.84!MSC;;chr9:102584241..102584261,+!p4@NR4A3!0.93!11.84!NR4A3;;chr19:18391615..18391637,-!p5@JUND!0.93!9.93!JUND;;chr2:145277882..145277967,-!p3@ZEB2!0.92!12.99!ZEB2;;chr2:5832508..5832524,+!p1@SOX11!0.92!7.26!SOX11;;chr12:85674018..85674039,+!p3@ALX1!0.92!7.26!ALX1;;chr17:46682321..46682362,-!p1@HOXB6!0.90!6.88!HOXB6;;chr13:46626824..46626835,-!p8@ZC3H13!0.89!8.79!ZC3H13;;chr19:3572758..3572795,+!p7@HMG20B!0.87!6.49!HMG20B;;chr4:109089095..109089144,-!p6@LEF1!0.87!6.49!LEF1;;chr6:10412477..10412490,-!p10@TFAP2A!0.87!6.49!TFAP2A;;chr22:38597987..38598021,+!p2@MAFF!0.86!40.87!MAFF;;chr1:935398..935465,-!p2@HES4!0.86!13.37!HES4;;chr11:125034605..125034636,+!p2@PKNOX2!0.85!6.11!PKNOX2;;chr4:109088940..109089037,-!p4@LEF1!0.85!6.11!LEF1;;chr19:35759824..35759891,+!p1@USF2!0.84!194.43!USF2;;chr11:65667846..65667868,-!p1@FOSL1!0.84!168.46!FOSL1;;chr17:41623692..41623715,-!p1@ETV4!0.84!26.74!ETV4;;chr19:3572689..3572697,+!p22@HMG20B!0.83!5.73!HMG20B;;chr12:54394309..54394336,+!p2@HOXC9!0.83!5.73!HOXC9;;chrY:21906594..21906622,-!p1@KDM5D!0.83!5.73!KDM5D;;chr9:16728327..16728338,-!p5@BNC2!0.83!5.73!BNC2;;chr16:79634624..79634642,-!p1@MAF!0.82!23.68!MAF;;chr13:41635029..41635044,-!p4@ELF1!0.82!12.61!ELF1;;chr20:32274179..32274213,-!p1@E2F1!0.81!39.34!E2F1;;chr20:50179368..50179392,-!p2@NFATC2!0.81!7.26!NFATC2;;chr5:88178983..88179012,-!p1@MEF2C!0.80!44.31!MEF2C;;chr11:64764435..64764449,-!p1@BATF2!0.80!7.64!BATF2;;chr12:54380404..54380433,+!p3@HOXC10!0.80!5.35!HOXC10;;chr16:67198683..67198698,+!p2@HSF4!0.80!5.35!HSF4;;chr1:204042233..204042249,+!p1@SOX13!0.79!35.14!SOX13;;chr19:3573282..3573289,+!p5@HMG20B!0.78!6.49!HMG20B;;chr17:46806016..46806029,-!p5@HOXB13!0.78!4.97!HOXB13;;chr17:46806098..46806118,-!p3@HOXB13!0.78!4.97!HOXB13;;chr1:25256439..25256476,-!p3@RUNX3!0.78!4.97!RUNX3;;chr8:72755987..72756002,-!p7@MSC!0.78!4.9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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002567
|ffid_belonging_in_development=CL:0000133,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg38.nobarcode.ctss.bed.gz
|id=FF:11274-116H5
|id=FF:11274-116H5
|is_a=EFO:0002091;;FF:0000090
|is_a=EFO:0002091;;FF:0000090
|is_obsolete=
|is_obsolete=
|library_id=CNhs11303
|library_id=CNhs11303
|library_id_phase_based=1:CNhs11303
|library_id_phase_based=2:CNhs11303
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11274
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GCCAAT.11274
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11274
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GCCAAT.11274
|name=Melanocyte - light, donor1
|name=Melanocyte - light, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11303,LSID905,release008,COMPLETED
|profile_hcage=CNhs11303,LSID905,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.74967664968;ZNF423:2.1811321858;SREBF1,2:1.98579571469;ESRRA:1.96742730837;NFE2L1:1.71244127693;PAX6:1.69944740423;bHLH_family:1.64551028314;NR5A1,2:1.61473162448;XCPE1{core}:1.4873822215;TFDP1:1.34873144567;NANOG:1.29931406885;GTF2A1,2:1.23182605649;HES1:1.16772039509;EN1,2:1.08679502981;PBX1:1.02674458008;RXR{A,B,G}:1.02313638375;HOX{A6,A7,B6,B7}:0.981284402651;EBF1:0.974094584164;POU3F1..4:0.950589041317;NR3C1:0.93628273082;PAX8:0.860750387967;SP1:0.854152948194;SOX{8,9,10}:0.772856556488;HOX{A4,D4}:0.761690201935;TFAP2B:0.740533688091;TFCP2:0.737176707948;ESR1:0.71439353048;NKX2-3_NKX2-5:0.678725646115;GFI1:0.616156170343;HIC1:0.573820578965;PAX5:0.557798931772;JUN:0.554233989682;TFAP2{A,C}:0.545645574246;POU2F1..3:0.528973012394;ZBTB6:0.497163713143;TP53:0.467565017379;ZNF143:0.466912955262;NFY{A,B,C}:0.465222076483;REST:0.446750781044;ZNF238:0.393977724549;PRRX1,2:0.361091158609;EGR1..3:0.300874024945;FOSL2:0.291819186364;FOXM1:0.288302764987;LHX3,4:0.287068233482;POU6F1:0.285677984481;TLX1..3_NFIC{dimer}:0.284786557085;HNF4A_NR2F1,2:0.263030072144;FOX{F1,F2,J1}:0.233162103489;CRX:0.230849890517;GTF2I:0.227575819559;RFX2..5_RFXANK_RFXAP:0.219150688432;FOX{D1,D2}:0.216908716827;SOX2:0.216516488992;STAT5{A,B}:0.209830715776;HMX1:0.204236922301;ELK1,4_GABP{A,B1}:0.176947015647;ZNF148:0.161158404225;PAX4:0.152566928053;IKZF1:0.152230300588;ZIC1..3:0.151017238361;PAX1,9:0.130779083741;RORA:0.112271245076;ATF4:0.0750333732954;ZFP161:0.0717212141984;VSX1,2:0.0636936009795;NRF1:0.0556804509218;ONECUT1,2:0.0547106606038;E2F1..5:0.0342469483583;ARID5B:0.0335327923203;BACH2:0.0267065197497;EP300:0.0180494590535;CUX2:0.00948419525167;AR:-0.0083842592655;GCM1,2:-0.0113240639506;LMO2:-0.0187260738768;ALX4:-0.0205648407451;GFI1B:-0.0241006965436;YY1:-0.0252584548597;MYB:-0.0256283157591;IRF7:-0.0386232906359;RFX1:-0.0518575367959;MEF2{A,B,C,D}:-0.0614973302458;POU1F1:-0.0710080067296;NHLH1,2:-0.0850631313308;GLI1..3:-0.0946610641021;RUNX1..3:-0.101149629327;NFE2:-0.102102762914;MED-1{core}:-0.104811327993;SPZ1:-0.121382232647;CDC5L:-0.123378936067;RREB1:-0.132426572655;RXRA_VDR{dimer}:-0.136074851794;FOS_FOS{B,L1}_JUN{B,D}:-0.138452938884;ELF1,2,4:-0.138546428521;PAX2:-0.143525392639;SOX17:-0.144728407838;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.159743799326;HNF1A:-0.170498103303;OCT4_SOX2{dimer}:-0.173044521326;XBP1:-0.185831814951;TFAP4:-0.185964042846;BREu{core}:-0.196335928293;HOX{A5,B5}:-0.203678425026;ATF5_CREB3:-0.207427495138;HOXA9_MEIS1:-0.21178005928;HAND1,2:-0.217819957542;NKX2-1,4:-0.228562177896;CREB1:-0.23079506697;TAL1_TCF{3,4,12}:-0.250921696831;GZF1:-0.251556788459;MAZ:-0.257753447531;EVI1:-0.261206597752;TEAD1:-0.262666161227;CEBPA,B_DDIT3:-0.268282610572;FOXQ1:-0.271580145329;TOPORS:-0.271887640778;NFE2L2:-0.282481367303;HBP1_HMGB_SSRP1_UBTF:-0.300727999508;LEF1_TCF7_TCF7L1,2:-0.302669431947;SPI1:-0.305745316564;UFEwm:-0.316962685094;ETS1,2:-0.323767720384;SPIB:-0.325080343119;STAT1,3:-0.328769774517;SMAD1..7,9:-0.335281244217;MTF1:-0.35144635321;HIF1A:-0.368615655175;NFIX:-0.375922840395;IRF1,2:-0.376781662432;STAT2,4,6:-0.393077179296;MAFB:-0.410705572457;MTE{core}:-0.414391921484;FOXA2:-0.449081862795;PRDM1:-0.45480918476;BPTF:-0.468624691876;NFKB1_REL_RELA:-0.485560794402;GATA6:-0.487496329121;TLX2:-0.504729614481;KLF4:-0.507758313505;ADNP_IRX_SIX_ZHX:-0.525019995914;AHR_ARNT_ARNT2:-0.532587778318;MYFfamily:-0.54477766747;SOX5:-0.551056398059;HLF:-0.554121897668;NFIL3:-0.556352050488;TEF:-0.566492049644;PATZ1:-0.597004454357;HSF1,2:-0.61332195016;DMAP1_NCOR{1,2}_SMARC:-0.629345872508;PAX3,7:-0.629645917815;SRF:-0.630511456693;NKX6-1,2:-0.631187855472;NR6A1:-0.636265053281;MYBL2:-0.636452909763;PPARG:-0.658591912934;NFATC1..3:-0.662013660449;NKX3-1:-0.66919184957;FOXL1:-0.669412149504;NKX3-2:-0.68438108586;SNAI1..3:-0.687673173245;TBX4,5:-0.689288831906;MZF1:-0.697692541157;TGIF1:-0.706227522632;ATF2:-0.758358646396;FOXO1,3,4:-0.779662249885;ZEB1:-0.830162534086;GATA4:-0.838288455091;PDX1:-0.873257481932;NANOG{mouse}:-0.902113821189;MYOD1:-0.906117909711;PITX1..3:-0.975180990737;RBPJ:-0.977532851948;ATF6:-1.02130702975;AIRE:-1.05065505102;TBP:-1.15826189756;FOXP3:-1.2393935706;ALX1:-1.2589855901;HMGA1,2:-1.2608836968;DBP:-1.30046006382;NKX2-2,8:-1.32666850987;FOXP1:-1.32934120476;ZBTB16:-1.41438520167;NR1H4:-1.48208343433;FOXN1:-1.48843809301;ZNF384:-1.51080183055;POU5F1:-1.56914062109;T:-1.59612902905;FOX{I1,J2}:-1.60099875809;IKZF2:-1.60665592862;CDX1,2,4:-1.85960653227;FOXD3:-2.09910089401
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.74967664968;ZNF423:2.1811321858;SREBF1,2:1.98579571469;ESRRA:1.96742730837;NFE2L1:1.71244127693;PAX6:1.69944740423;bHLH_family:1.64551028314;NR5A1,2:1.61473162448;XCPE1{core}:1.4873822215;TFDP1:1.34873144567;NANOG:1.29931406885;GTF2A1,2:1.23182605649;HES1:1.16772039509;EN1,2:1.08679502981;PBX1:1.02674458008;RXR{A,B,G}:1.02313638375;HOX{A6,A7,B6,B7}:0.981284402651;EBF1:0.974094584164;POU3F1..4:0.950589041317;NR3C1:0.93628273082;PAX8:0.860750387967;SP1:0.854152948194;SOX{8,9,10}:0.772856556488;HOX{A4,D4}:0.761690201935;TFAP2B:0.740533688091;TFCP2:0.737176707948;ESR1:0.71439353048;NKX2-3_NKX2-5:0.678725646115;GFI1:0.616156170343;HIC1:0.573820578965;PAX5:0.557798931772;JUN:0.554233989682;TFAP2{A,C}:0.545645574246;POU2F1..3:0.528973012394;ZBTB6:0.497163713143;TP53:0.467565017379;ZNF143:0.466912955262;NFY{A,B,C}:0.465222076483;REST:0.446750781044;ZNF238:0.393977724549;PRRX1,2:0.361091158609;EGR1..3:0.300874024945;FOSL2:0.291819186364;FOXM1:0.288302764987;LHX3,4:0.287068233482;POU6F1:0.285677984481;TLX1..3_NFIC{dimer}:0.284786557085;HNF4A_NR2F1,2:0.263030072144;FOX{F1,F2,J1}:0.233162103489;CRX:0.230849890517;GTF2I:0.227575819559;RFX2..5_RFXANK_RFXAP:0.219150688432;FOX{D1,D2}:0.216908716827;SOX2:0.216516488992;STAT5{A,B}:0.209830715776;HMX1:0.204236922301;ELK1,4_GABP{A,B1}:0.176947015647;ZNF148:0.161158404225;PAX4:0.152566928053;IKZF1:0.152230300588;ZIC1..3:0.151017238361;PAX1,9:0.130779083741;RORA:0.112271245076;ATF4:0.0750333732954;ZFP161:0.0717212141984;VSX1,2:0.0636936009795;NRF1:0.0556804509218;ONECUT1,2:0.0547106606038;E2F1..5:0.0342469483583;ARID5B:0.0335327923203;BACH2:0.0267065197497;EP300:0.0180494590535;CUX2:0.00948419525167;AR:-0.0083842592655;GCM1,2:-0.0113240639506;LMO2:-0.0187260738768;ALX4:-0.0205648407451;GFI1B:-0.0241006965436;YY1:-0.0252584548597;MYB:-0.0256283157591;IRF7:-0.0386232906359;RFX1:-0.0518575367959;MEF2{A,B,C,D}:-0.0614973302458;POU1F1:-0.0710080067296;NHLH1,2:-0.0850631313308;GLI1..3:-0.0946610641021;RUNX1..3:-0.101149629327;NFE2:-0.102102762914;MED-1{core}:-0.104811327993;SPZ1:-0.121382232647;CDC5L:-0.123378936067;RREB1:-0.132426572655;RXRA_VDR{dimer}:-0.136074851794;FOS_FOS{B,L1}_JUN{B,D}:-0.138452938884;ELF1,2,4:-0.138546428521;PAX2:-0.143525392639;SOX17:-0.144728407838;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.159743799326;HNF1A:-0.170498103303;OCT4_SOX2{dimer}:-0.173044521326;XBP1:-0.185831814951;TFAP4:-0.185964042846;BREu{core}:-0.196335928293;HOX{A5,B5}:-0.203678425026;ATF5_CREB3:-0.207427495138;HOXA9_MEIS1:-0.21178005928;HAND1,2:-0.217819957542;NKX2-1,4:-0.228562177896;CREB1:-0.23079506697;TAL1_TCF{3,4,12}:-0.250921696831;GZF1:-0.251556788459;MAZ:-0.257753447531;EVI1:-0.261206597752;TEAD1:-0.262666161227;CEBPA,B_DDIT3:-0.268282610572;FOXQ1:-0.271580145329;TOPORS:-0.271887640778;NFE2L2:-0.282481367303;HBP1_HMGB_SSRP1_UBTF:-0.300727999508;LEF1_TCF7_TCF7L1,2:-0.302669431947;SPI1:-0.305745316564;UFEwm:-0.316962685094;ETS1,2:-0.323767720384;SPIB:-0.325080343119;STAT1,3:-0.328769774517;SMAD1..7,9:-0.335281244217;MTF1:-0.35144635321;HIF1A:-0.368615655175;NFIX:-0.375922840395;IRF1,2:-0.376781662432;STAT2,4,6:-0.393077179296;MAFB:-0.410705572457;MTE{core}:-0.414391921484;FOXA2:-0.449081862795;PRDM1:-0.45480918476;BPTF:-0.468624691876;NFKB1_REL_RELA:-0.485560794402;GATA6:-0.487496329121;TLX2:-0.504729614481;KLF4:-0.507758313505;ADNP_IRX_SIX_ZHX:-0.525019995914;AHR_ARNT_ARNT2:-0.532587778318;MYFfamily:-0.54477766747;SOX5:-0.551056398059;HLF:-0.554121897668;NFIL3:-0.556352050488;TEF:-0.566492049644;PATZ1:-0.597004454357;HSF1,2:-0.61332195016;DMAP1_NCOR{1,2}_SMARC:-0.629345872508;PAX3,7:-0.629645917815;SRF:-0.630511456693;NKX6-1,2:-0.631187855472;NR6A1:-0.636265053281;MYBL2:-0.636452909763;PPARG:-0.658591912934;NFATC1..3:-0.662013660449;NKX3-1:-0.66919184957;FOXL1:-0.669412149504;NKX3-2:-0.68438108586;SNAI1..3:-0.687673173245;TBX4,5:-0.689288831906;MZF1:-0.697692541157;TGIF1:-0.706227522632;ATF2:-0.758358646396;FOXO1,3,4:-0.779662249885;ZEB1:-0.830162534086;GATA4:-0.838288455091;PDX1:-0.873257481932;NANOG{mouse}:-0.902113821189;MYOD1:-0.906117909711;PITX1..3:-0.975180990737;RBPJ:-0.977532851948;ATF6:-1.02130702975;AIRE:-1.05065505102;TBP:-1.15826189756;FOXP3:-1.2393935706;ALX1:-1.2589855901;HMGA1,2:-1.2608836968;DBP:-1.30046006382;NKX2-2,8:-1.32666850987;FOXP1:-1.32934120476;ZBTB16:-1.41438520167;NR1H4:-1.48208343433;FOXN1:-1.48843809301;ZNF384:-1.51080183055;POU5F1:-1.56914062109;T:-1.59612902905;FOX{I1,J2}:-1.60099875809;IKZF2:-1.60665592862;CDX1,2,4:-1.85960653227;FOXD3:-2.09910089401
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11274-116H5;search_select_hide=table117:FF:11274-116H5
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Melanocyte - light, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11303
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageinfant
sexmale
ageNeonatal
cell typemelanocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1097
catalog numberCA104-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005723
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11303 CAGE DRX008338 DRR009210
Accession ID Hg19

Library idBAMCTSS
CNhs11303 DRZ000635 DRZ002020
Accession ID Hg38

Library idBAMCTSS
CNhs11303 DRZ011985 DRZ013370
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005723
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.GCCAAT sRNA-Seq DRX037149 DRR041515
Accession ID Hg19

Library idBAMCTSS
SRhi10010.GCCAAT DRZ007157


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0429
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.332
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.302
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.307
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0276
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0734
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.232
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0521
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.565
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.875
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11303

Jaspar motifP-value
MA0002.20.882
MA0003.10.43
MA0004.16.38786e-6
MA0006.10.727
MA0007.10.242
MA0009.10.238
MA0014.10.261
MA0017.10.82
MA0018.20.0788
MA0019.10.0434
MA0024.10.284
MA0025.10.686
MA0027.10.42
MA0028.10.38
MA0029.10.75
MA0030.10.542
MA0031.10.813
MA0035.20.191
MA0038.10.0414
MA0039.20.0109
MA0040.10.911
MA0041.10.288
MA0042.10.939
MA0043.10.422
MA0046.10.744
MA0047.20.66
MA0048.10.532
MA0050.10.421
MA0051.10.616
MA0052.10.0142
MA0055.10.00634
MA0057.10.339
MA0058.18.80678e-9
MA0059.10.00683
MA0060.11.40372e-7
MA0061.12.03187e-4
MA0062.20.0112
MA0065.20.428
MA0066.10.802
MA0067.10.00356
MA0068.10.54
MA0069.10.43
MA0070.16.99089e-5
MA0071.10.773
MA0072.10.75
MA0073.10.999
MA0074.10.302
MA0076.10.283
MA0077.10.618
MA0078.10.871
MA0079.20.0527
MA0080.20.0121
MA0081.10.973
MA0083.10.135
MA0084.10.447
MA0087.10.416
MA0088.10.398
MA0090.10.45
MA0091.10.34
MA0092.10.221
MA0093.16.71341e-6
MA0099.20.983
MA0100.10.63
MA0101.10.00641
MA0102.27.70206e-4
MA0103.10.0493
MA0104.20.00569
MA0105.14.32971e-5
MA0106.10.344
MA0107.10.00317
MA0108.20.534
MA0111.10.465
MA0112.20.117
MA0113.10.861
MA0114.10.347
MA0115.10.76
MA0116.10.00147
MA0117.10.0542
MA0119.10.25
MA0122.10.958
MA0124.10.316
MA0125.10.0307
MA0131.10.839
MA0135.10.0371
MA0136.10.0308
MA0137.20.203
MA0138.20.717
MA0139.10.866
MA0140.10.574
MA0141.10.0691
MA0142.10.6
MA0143.10.443
MA0144.10.455
MA0145.10.559
MA0146.10.0201
MA0147.10.0315
MA0148.10.578
MA0149.10.324
MA0150.10.231
MA0152.10.252
MA0153.10.725
MA0154.10.0743
MA0155.10.503
MA0156.10.448
MA0157.10.852
MA0159.10.531
MA0160.10.0821
MA0162.10.821
MA0163.10.0696
MA0164.10.967
MA0258.10.867
MA0259.10.102



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11303

Novel motifP-value
10.339
100.0248
1000.601
1010.112
1020.131
1030.901
1040.272
1050.943
1060.465
1070.0779
1080.772
1090.303
110.528
1100.152
1110.0895
1120.618
1130.0106
1140.164
1150.859
1160.0859
1170.876
1180.666
1190.292
120.553
1200.91
1210.699
1220.265
1230.273
1240.613
1250.155
1260.336
1270.58
1280.728
1290.561
130.907
1300.21
1310.134
1320.448
1330.869
1340.865
1350.912
1360.0253
1370.679
1380.922
1390.00152
140.967
1400.45
1410.342
1420.809
1430.933
1440.815
1450.989
1460.0244
1470.866
1480.003
1490.977
150.77
1500.53
1510.68
1520.125
1530.115
1540.0693
1550.685
1560.915
1570.536
1580.369
1590.553
160.88
1600.253
1610.355
1620.15
1630.516
1640.216
1650.2
1660.353
1670.116
1680.448
1690.566
170.769
180.638
190.632
20.512
200.402
210.49
220.204
230.224
240.814
250.109
260.696
270.77
280.567
290.465
30.347
300.613
310.613
320.0069
330.923
340.522
350.0468
360.431
370.993
380.955
390.952
40.881
400.174
410.652
420.0974
430.26
440.711
450.784
460.646
470.498
480.428
490.193
50.325
500.405
510.849
520.432
530.115
540.653
550.13
560.768
570.821
580.00808
590.837
60.858
600.235
610.523
623.51316e-4
630.878
640.918
650.641
660.0707
670.722
680.348
690.452
70.196
700.176
710.125
720.554
730.02
740.362
750.876
760.779
770.996
780.032
790.366
80.574
800.467
810.316
820.34
830.59
840.355
850.518
860.875
870.00337
880.869
890.813
90.879
900.0798
910.887
920.0173
930.574
940.183
950.222
960.322
970.122
980.833
990.174



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11303


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
0002567 (light melanocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000090 (human light melanocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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