FFCP PHASE1:Mm9::chr15:76984202..76984247,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:76984202..76984247,-
|short_description=p2@Rbfox2
|description=CAGE_peak_2_at_Rbfox2_5end
|association_with_transcript=0bp_to_ENSMUST00000111581,ENSMUST00...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=93686 | |EntrezGene=93686 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BP71 | |UniProt=Q8BP71 | ||
|association_with_transcript=0bp_to_ENSMUST00000111581,ENSMUST00000166610,NM_001110828,NM_001110829,NM_001110830,uc007wnc.2,uc007wnd.2,uc007wne.2,uc007wnf.2,uc011zvf.1,uc011zvg.1_5end | |||
|cluster_id=chr15:76984202..76984247,- | |||
|description=CAGE_peak_2_at_Rbfox2_5end | |||
|id=chr15:76984202..76984247,- | |||
|ontology_enrichment_celltype=CL:0000540!6.50e-17!33;CL:0000047!6.50e-17!33;CL:0000031!6.50e-17!33;CL:0000404!6.50e-17!33;CL:0000393!1.16e-16!39;CL:0000211!1.16e-16!39;CL:0002319!1.09e-15!43;CL:0000221!8.50e-15!44;CL:0000133!8.50e-15!44;CL:0000055!9.28e-15!50;CL:0000117!2.79e-14!23;CL:0000337!2.79e-14!23;CL:0002321!5.35e-09!70;CL:0000220!5.35e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.20e-17,33;CL:0000047,6.20e-17,33;CL:0000031,6.20e-17,33;CL:0000404,6.20e-17,33;CL:0000393,1.11e-16,39;CL:0000211,1.11e-16,39;CL:0002319,1.05e-15,43;CL:0000221,8.17e-15,44;CL:0000133,8.17e-15,44;CL:0000117,2.68e-14,23;CL:0000337,2.68e-14,23;CL:0002321,5.23e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.48e-27!73;UBERON:0005743!2.48e-27!73;UBERON:0000073!8.52e-27!75;UBERON:0001016!8.52e-27!75;UBERON:0004121!1.39e-21!102;UBERON:0000924!1.39e-21!102;UBERON:0006601!1.39e-21!102;UBERON:0001049!2.26e-21!52;UBERON:0005068!2.26e-21!52;UBERON:0006241!2.26e-21!52;UBERON:0007135!2.26e-21!52;UBERON:0002346!1.72e-19!71;UBERON:0003075!1.72e-19!71;UBERON:0007284!1.72e-19!71;UBERON:0002616!4.57e-19!49;UBERON:0000955!9.44e-19!50;UBERON:0006238!9.44e-19!50;UBERON:0000033!1.87e-16!63;UBERON:0003080!1.08e-15!40;UBERON:0002780!2.24e-15!39;UBERON:0001890!2.24e-15!39;UBERON:0006240!2.24e-15!39;UBERON:0000025!3.23e-15!114;UBERON:0003056!5.07e-15!49;UBERON:0002020!5.12e-15!34;UBERON:0004111!1.07e-13!122;UBERON:0002791!5.10e-12!29;UBERON:0003528!5.10e-12!29;UBERON:0001893!5.10e-12!29;UBERON:0000956!3.23e-08!21;UBERON:0001869!3.23e-08!21;UBERON:0000203!3.23e-08!21;UBERON:0000468!4.48e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.30e-27,73;UBERON:0001016,7.90e-27,75;UBERON:0010314,7.24e-24,92;UBERON:0004121,4.75e-23,95;UBERON:0000924,4.75e-23,95;UBERON:0006601,4.75e-23,95;UBERON:0000073,2.57e-22,54;UBERON:0002346,1.44e-21,64;UBERON:0003075,1.44e-21,64;UBERON:0007284,1.44e-21,64;UBERON:0001049,2.13e-21,52;UBERON:0005068,2.13e-21,52;UBERON:0006241,2.13e-21,52;UBERON:0007135,2.13e-21,52;UBERON:0010371,9.78e-19,73;UBERON:0002616,6.86e-18,46;UBERON:0000955,1.42e-17,47;UBERON:0006238,1.42e-17,47;UBERON:0003080,1.04e-15,40;UBERON:0002780,2.15e-15,39;UBERON:0001890,2.15e-15,39;UBERON:0006240,2.15e-15,39;UBERON:0000025,2.88e-15,114;UBERON:0003056,4.87e-15,49;UBERON:0002020,4.92e-15,34;UBERON:0004111,9.64e-14,122;UBERON:0003528,4.94e-12,29;UBERON:0002791,4.94e-12,29;UBERON:0001893,4.94e-12,29;UBERON:0000956,3.17e-08,21;UBERON:0001869,3.17e-08,21;UBERON:0000203,3.17e-08,21;UBERON:0000922,2.56e-07,320 | |||
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| ||
|short_description=p2@Rbfox2 | |||
}} | }} |
Latest revision as of 01:20, 27 September 2015
Short description: | p2@Rbfox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rbfox2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000111581, ENSMUST00000166610, NM_001110828, NM_001110829, NM_001110830, uc007wnc.2, uc007wnd.2, uc007wne.2, uc007wnf.2, uc011zvf.1, uc011zvg.1_5end |
EntrezGene: | Rbfox2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.20e-17 | 33 |
neuronal stem cell | 6.20e-17 | 33 |
neuroblast | 6.20e-17 | 33 |
electrically signaling cell | 6.20e-17 | 33 |
electrically responsive cell | 1.11e-16 | 39 |
electrically active cell | 1.11e-16 | 39 |
neural cell | 1.05e-15 | 43 |
ectodermal cell | 8.17e-15 | 44 |
neurectodermal cell | 8.17e-15 | 44 |
CNS neuron (sensu Vertebrata) | 2.68e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.68e-14 | 23 |
embryonic cell | 5.23e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.30e-27 | 73 |
nervous system | 7.90e-27 | 75 |
structure with developmental contribution from neural crest | 7.24e-24 | 92 |
ectoderm-derived structure | 4.75e-23 | 95 |
ectoderm | 4.75e-23 | 95 |
presumptive ectoderm | 4.75e-23 | 95 |
regional part of nervous system | 2.57e-22 | 54 |
neurectoderm | 1.44e-21 | 64 |
neural plate | 1.44e-21 | 64 |
presumptive neural plate | 1.44e-21 | 64 |
neural tube | 2.13e-21 | 52 |
neural rod | 2.13e-21 | 52 |
future spinal cord | 2.13e-21 | 52 |
neural keel | 2.13e-21 | 52 |
ecto-epithelium | 9.78e-19 | 73 |
regional part of brain | 6.86e-18 | 46 |
brain | 1.42e-17 | 47 |
future brain | 1.42e-17 | 47 |
anterior neural tube | 1.04e-15 | 40 |
regional part of forebrain | 2.15e-15 | 39 |
forebrain | 2.15e-15 | 39 |
future forebrain | 2.15e-15 | 39 |
tube | 2.88e-15 | 114 |
pre-chordal neural plate | 4.87e-15 | 49 |
gray matter | 4.92e-15 | 34 |
anatomical conduit | 9.64e-14 | 122 |
brain grey matter | 4.94e-12 | 29 |
regional part of telencephalon | 4.94e-12 | 29 |
telencephalon | 4.94e-12 | 29 |
cerebral cortex | 3.17e-08 | 21 |
cerebral hemisphere | 3.17e-08 | 21 |
pallium | 3.17e-08 | 21 |
embryo | 2.56e-07 | 320 |