FFCP PHASE1:Mm9::chr16:28445935..28445953,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:28445935..28445953,-
|short_description=p@chr16:28445935..28445953,-
|description=CAGE_peak_at_chr16:28445935..28445953,-
|association_with_transcript=NA
...") |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=93 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:28445935..28445953,- | |||
|description=CAGE_peak_at_chr16:28445935..28445953,- | |||
|id=chr16:28445935..28445953,- | |||
|ontology_enrichment_celltype=CL:0000117!2.88e-13!23;CL:0000337!2.88e-13!23;CL:0000540!1.10e-07!33;CL:0000047!1.10e-07!33;CL:0000031!1.10e-07!33;CL:0000404!1.10e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.76e-08,23;CL:0000337,7.76e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.33e-21!52;UBERON:0005068!9.33e-21!52;UBERON:0006241!9.33e-21!52;UBERON:0007135!9.33e-21!52;UBERON:0002020!2.82e-20!34;UBERON:0000955!2.35e-18!50;UBERON:0006238!2.35e-18!50;UBERON:0001017!2.40e-18!73;UBERON:0005743!2.40e-18!73;UBERON:0000033!6.36e-18!63;UBERON:0003056!9.67e-18!49;UBERON:0002616!1.96e-17!49;UBERON:0000073!2.25e-17!75;UBERON:0001016!2.25e-17!75;UBERON:0003080!6.27e-17!40;UBERON:0002791!1.84e-16!29;UBERON:0003528!1.84e-16!29;UBERON:0001893!1.84e-16!29;UBERON:0002346!2.95e-16!71;UBERON:0003075!2.95e-16!71;UBERON:0007284!2.95e-16!71;UBERON:0002780!3.21e-16!39;UBERON:0001890!3.21e-16!39;UBERON:0006240!3.21e-16!39;UBERON:0000956!1.66e-12!21;UBERON:0001869!1.66e-12!21;UBERON:0000203!1.66e-12!21;UBERON:0004121!3.46e-12!102;UBERON:0000924!3.46e-12!102;UBERON:0006601!3.46e-12!102;UBERON:0007811!1.16e-10!86;UBERON:0002619!1.54e-10!17;UBERON:0000153!1.79e-10!94;UBERON:0002021!1.72e-07!10;UBERON:0000411!1.72e-07!10;UBERON:0001950!1.72e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.88e-19,34;UBERON:0003528,2.33e-17,29;UBERON:0002791,2.33e-17,29;UBERON:0001893,2.33e-17,29;UBERON:0003056,1.29e-16,49;UBERON:0002346,2.57e-15,64;UBERON:0003075,2.57e-15,64;UBERON:0007284,2.57e-15,64;UBERON:0002619,3.28e-15,17;UBERON:0000073,8.42e-15,54;UBERON:0000956,8.46e-15,21;UBERON:0001869,8.46e-15,21;UBERON:0000203,8.46e-15,21;UBERON:0002780,1.74e-14,39;UBERON:0001890,1.74e-14,39;UBERON:0006240,1.74e-14,39;UBERON:0003080,4.71e-14,40;UBERON:0001049,1.37e-13,52;UBERON:0005068,1.37e-13,52;UBERON:0006241,1.37e-13,52;UBERON:0007135,1.37e-13,52;UBERON:0000955,1.48e-13,47;UBERON:0006238,1.48e-13,47;UBERON:0001017,4.34e-13,73;UBERON:0004121,4.67e-13,95;UBERON:0000924,4.67e-13,95;UBERON:0006601,4.67e-13,95;UBERON:0010371,5.78e-13,73;UBERON:0001016,1.22e-12,75;UBERON:0002021,2.53e-12,10;UBERON:0000411,2.53e-12,10;UBERON:0001950,2.53e-12,10;UBERON:0002616,7.41e-12,46;UBERON:0010314,1.65e-09,92 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0.606949382578793,1.05798195854407,0.633831403506179,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0.270011876663381,0.420649922702764,1.14260393761521,0.662605622854841,1.10241719293459,0.479227355091182,1.83843757322004,0,0.766124028511126,1.22885226604995,0.527545150920775,0.182975287204819,0,0.837548997004143,1.12552522006336,1.5279824777681,1.47314292736834,0.427115042397309,0.931997229126503,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628340120440365,0,0,0,0,0.748953197024114,0.915001205637253,1.13088916901578,1.39059456153821,3.06858548796397,2.49345653471472,0.648965052271031,0.101839363850316,0,1.0108910337347,0,0,0,0,0.90422890701429,1.02054748726992,1.92170580427275,1.03071897015702,0.258703370739016,0,0.567318240503458,0.527853372491847,0.219195732427575,0,0,0,0.796137067273973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89260953707715,0.514523061896422,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0.379335801906163,0,0,0,0,0.280543279561274,0.126473074248515,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0,0,0.238043640886014,0,0.472905432318573,1.55025282754142,0,0,0,0,0,0,0,0,0.642202359951168,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,24.0990987316355,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0.363533729477506,0.356497378384721,0,0,0,0.340439605753788,0.18006109403131,0,0,0.354680467284547,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0,0,0,0.134864346384821,0.0826534557253359,0,0,0,1.69107881605257,0,0,0.194451188344048,0,0.168956125490778,0.352071715937262,0.13020438484395,0.104859344425711,0,0,0,0.202725215290164,0.205421914329655,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73260649706906,1.2862102744744,0,2.25900737046827,0.460325236507177,0,1.54667864109319,2.05524755931193,1.5107877947794,2.02506750069542,0.45032120322422,0.453142408984205,3.10656187051092,0,0.399024873401031,0.512200817262403,0.243106717068294,0.209613162627982,0.183843508450014,0,0.206035057238894,0.320919209591815,0.505394423527595,0,0.943131706930381,0.187283014939765,0.512201219238954,0.17230640686684,0.476293691283074,0.115884325944855,0.38581844092741,0,0.441596760403192,0.342869252385415,0.177475806159338,0,0,0.376437521661322,0.338458431566706,0.182927972872773,0,0.271608227691724,0.561142271657738,0,0.197008964751127,0.409231043169689,0.309873682371932,0.771626443924566,0.499621155875892,0,0.429742108096597,0,0,0 | |phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0.606949382578793,1.05798195854407,0.633831403506179,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0.270011876663381,0.420649922702764,1.14260393761521,0.662605622854841,1.10241719293459,0.479227355091182,1.83843757322004,0,0.766124028511126,1.22885226604995,0.527545150920775,0.182975287204819,0,0.837548997004143,1.12552522006336,1.5279824777681,1.47314292736834,0.427115042397309,0.931997229126503,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628340120440365,0,0,0,0,0.748953197024114,0.915001205637253,1.13088916901578,1.39059456153821,3.06858548796397,2.49345653471472,0.648965052271031,0.101839363850316,0,1.0108910337347,0,0,0,0,0.90422890701429,1.02054748726992,1.92170580427275,1.03071897015702,0.258703370739016,0,0.567318240503458,0.527853372491847,0.219195732427575,0,0,0,0.796137067273973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89260953707715,0.514523061896422,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0.379335801906163,0,0,0,0,0.280543279561274,0.126473074248515,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0,0,0.238043640886014,0,0.472905432318573,1.55025282754142,0,0,0,0,0,0,0,0,0.642202359951168,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,24.0990987316355,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0.363533729477506,0.356497378384721,0,0,0,0.340439605753788,0.18006109403131,0,0,0.354680467284547,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0,0,0,0.134864346384821,0.0826534557253359,0,0,0,1.69107881605257,0,0,0.194451188344048,0,0.168956125490778,0.352071715937262,0.13020438484395,0.104859344425711,0,0,0,0.202725215290164,0.205421914329655,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73260649706906,1.2862102744744,0,2.25900737046827,0.460325236507177,0,1.54667864109319,2.05524755931193,1.5107877947794,2.02506750069542,0.45032120322422,0.453142408984205,3.10656187051092,0,0.399024873401031,0.512200817262403,0.243106717068294,0.209613162627982,0.183843508450014,0,0.206035057238894,0.320919209591815,0.505394423527595,0,0.943131706930381,0.187283014939765,0.512201219238954,0.17230640686684,0.476293691283074,0.115884325944855,0.38581844092741,0,0.441596760403192,0.342869252385415,0.177475806159338,0,0,0.376437521661322,0.338458431566706,0.182927972872773,0,0.271608227691724,0.561142271657738,0,0.197008964751127,0.409231043169689,0.309873682371932,0.771626443924566,0.499621155875892,0,0.429742108096597,0,0,0 | ||
|short_description=p@chr16:28445935..28445953,- | |||
}} | }} |
Latest revision as of 06:34, 6 August 2015
Short description: | p@chr16:28445935..28445953, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr16:28445935..28445953, - |
Coexpression cluster: | MCL_coexpression_mm9:93 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.76e-08 | 23 |
neuroblast (sensu Vertebrata) | 7.76e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
gray matter | 1.88e-19 | 34 |
brain grey matter | 2.33e-17 | 29 |
regional part of telencephalon | 2.33e-17 | 29 |
telencephalon | 2.33e-17 | 29 |
pre-chordal neural plate | 1.29e-16 | 49 |
neurectoderm | 2.57e-15 | 64 |
neural plate | 2.57e-15 | 64 |
presumptive neural plate | 2.57e-15 | 64 |
regional part of cerebral cortex | 3.28e-15 | 17 |
regional part of nervous system | 8.42e-15 | 54 |
cerebral cortex | 8.46e-15 | 21 |
cerebral hemisphere | 8.46e-15 | 21 |
pallium | 8.46e-15 | 21 |
regional part of forebrain | 1.74e-14 | 39 |
forebrain | 1.74e-14 | 39 |
future forebrain | 1.74e-14 | 39 |
anterior neural tube | 4.71e-14 | 40 |
neural tube | 1.37e-13 | 52 |
neural rod | 1.37e-13 | 52 |
future spinal cord | 1.37e-13 | 52 |
neural keel | 1.37e-13 | 52 |
brain | 1.48e-13 | 47 |
future brain | 1.48e-13 | 47 |
central nervous system | 4.34e-13 | 73 |
ectoderm-derived structure | 4.67e-13 | 95 |
ectoderm | 4.67e-13 | 95 |
presumptive ectoderm | 4.67e-13 | 95 |
ecto-epithelium | 5.78e-13 | 73 |
nervous system | 1.22e-12 | 75 |
occipital lobe | 2.53e-12 | 10 |
visual cortex | 2.53e-12 | 10 |
neocortex | 2.53e-12 | 10 |
regional part of brain | 7.41e-12 | 46 |
structure with developmental contribution from neural crest | 1.65e-09 | 92 |