FFCP PHASE1:Mm9::chr2:163896860..163896882,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:163896860..163896882,-
|short_description=p2@Tomm34
|description=CAGE_peak_2_at_Tomm34_5end
|association_with_transcript=-11bp_to_uc008nts.1_5end
|EntrezG...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=67145 | |EntrezGene=67145 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9CYG7 | |UniProt=Q9CYG7 | ||
|association_with_transcript=-11bp_to_uc008nts.1_5end | |||
|cluster_id=chr2:163896860..163896882,- | |||
|description=CAGE_peak_2_at_Tomm34_5end | |||
|id=chr2:163896860..163896882,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!3.63e-15!94;UBERON:0007811!9.67e-15!86;UBERON:0000033!5.42e-14!63;UBERON:0000955!1.43e-12!50;UBERON:0006238!1.43e-12!50;UBERON:0002616!4.02e-12!49;UBERON:0003056!2.23e-10!49;UBERON:0001049!4.64e-10!52;UBERON:0005068!4.64e-10!52;UBERON:0006241!4.64e-10!52;UBERON:0007135!4.64e-10!52;UBERON:0003080!1.10e-09!40;UBERON:0002346!2.29e-09!71;UBERON:0003075!2.29e-09!71;UBERON:0007284!2.29e-09!71;UBERON:0002780!3.91e-09!39;UBERON:0001890!3.91e-09!39;UBERON:0006240!3.91e-09!39;UBERON:0001017!4.26e-09!73;UBERON:0005743!4.26e-09!73;UBERON:0004121!1.44e-08!102;UBERON:0000924!1.44e-08!102;UBERON:0006601!1.44e-08!102;UBERON:0000073!3.39e-08!75;UBERON:0001016!3.39e-08!75;UBERON:0002021!4.04e-07!10;UBERON:0000411!4.04e-07!10;UBERON:0001950!4.04e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.50e-11,54;UBERON:0000955,8.22e-11,47;UBERON:0006238,8.22e-11,47;UBERON:0002616,2.21e-10,46;UBERON:0003056,2.54e-10,49;UBERON:0002346,3.09e-10,64;UBERON:0003075,3.09e-10,64;UBERON:0007284,3.09e-10,64;UBERON:0010314,4.79e-10,92;UBERON:0001049,5.17e-10,52;UBERON:0005068,5.17e-10,52;UBERON:0006241,5.17e-10,52;UBERON:0007135,5.17e-10,52;UBERON:0003080,1.27e-09,40;UBERON:0010371,2.08e-09,73;UBERON:0001017,3.86e-09,73;UBERON:0002780,4.50e-09,39;UBERON:0001890,4.50e-09,39;UBERON:0006240,4.50e-09,39;UBERON:0004121,4.69e-09,95;UBERON:0000924,4.69e-09,95;UBERON:0006601,4.69e-09,95;UBERON:0001016,3.16e-08,75;UBERON:0002021,3.95e-07,10;UBERON:0000411,3.95e-07,10;UBERON:0001950,3.95e-07,10 | |||
|phase1_expression=2.88267924788629,0.697950815278722,0.454999239389536,0.60492842261366,0,0.839396359559449,1.63528848416868,3.35720640948098,0.985521055061667,1.40438715793196,2.73948749160808,2.31339261086476,3.42401459862411,3.4093956943409,3.33109761815663,2.22722794128809,2.09868563438444,3.78554598429885,3.01651753932625,1.69755860719212,3.06155844543851,2.78014663362479,2.35079810225042,0.799962113967033,1.60586496747019,0,0.430761996159075,0.861884930743556,0.380046838912748,1.51218077855958,0.443461021310609,7.62036808151557,1.23012957516914,0,2.59966457776147,2.49351968037739,2.04169356262369,2.51118978442145,3.1253413780952,1.0470474879476,1.17646297606203,0.683045484958446,2.42755176515577,1.88845226963366,1.72340783073175,0.917733760808408,1.56478268869608,0.65407546914134,2.19686182734472,1.1665793944457,1.1198913730029,2.87505128729943,4.02678254538567,5.07753499407941,2.35265659399725,1.54355661621568,2.29226751951005,2.06268836910977,2.22548106945558,0,1.26766280701236,1.35537812827653,0.889294796111139,2.2497492932035,0.988866362566974,1.4209602298922,1.79760066311043,3.07374644257244,2.38486108309499,1.75507719831198,2.73422449756797,1.42825492201902,2.42955395046775,2.08234358665422,1.15014565221884,0.919218786610021,13.2139057199266,8.2996769755372,8.90917892886212,2.37395317914349,1.82975287204819,3.12548022334056,11.725685958058,7.87867654044352,9.47349136216223,2.06240009831567,1.85083185038834,2.60959224155421,0.757261933331841,1.43585964202892,1.73918693221007,0,0,1.61910957491345,3.24888208723835,2.24013443548668,2.52799956237153,0.852151612890289,1.03914401841148,1.06001872353102,2.11265129665021,3.84979432242953,0,0,1.73192832808971,1.77351905832569,1.01104889002957,1.48439043634778,5.95557132388495,2.3750742250372,1.21439728736295,1.52232739156071,1.61430848079241,1.65794904607885,3.29248379979973,3.26733137457156,2.22475470960936,3.32578520915797,0.884610551949874,1.45590164952668,1.32504911076236,1.93950101254089,0,7.61230072230023,6.91174132484402,1.78819938646014,3.35482348616577,1.79970819298022,4.06624726633807,9.58660092190865,9.15001205637253,2.26177833803156,9.73416193076748,3.3243009452943,7.89594569326328,2.92034273521964,1.32391173005411,2.11491850037158,2.77995034277042,3.15662783829711,2.99277018814219,2.98872735763515,2.34080768746954,2.26057226753573,2.31324097114515,2.94661556655154,2.24884138943349,3.10444044886819,2.58681591519411,3.78212160335639,3.16712023495108,2.19195732427575,1.66828349535359,1.74126083261083,2.05782136407943,2.58744546864041,2.80885274925294,0.772043721344145,3.6941254921427,3.52113813310353,2.81431271977315,2.88099298337624,5.68187365404505,3.73852040320067,3.39387648352232,1.86027155800326,1.87791380979733,3.61972561338225,3.12663714835613,1.80584210487005,2.10778904819225,1.60819986167866,2.19550115291051,1.07365135008297,10.0939175310781,2.6755199218614,1.32167513193519,0.528901133327089,2.13288250535234,2.78684006232526,2.44848176511977,1.81515172161008,1.77902435075896,1.33157938278791,1.42358718463353,1.15289268306808,1.00534083520108,1.59165177632921,1.9496408711912,0,1.08069024937347,1.1948476395262,3.60369011810855,1.5994791765362,4.50830942692322,2.24016460629846,1.55161989734101,2.73529697572242,1.89709611372772,2.50937251565324,1.72698600625512,2.09775178667061,1.48226313543574,2.00214126859313,2.35870794135844,4.04751802292737,2.02860121388503,1.20588579876208,1.2731292589071,0.863088412352432,0.810676133875177,1.09824565275233,1.43768206527355,1.11642284300551,1.5601883655728,0.757736633841335,1.07638448113147,2.41221760681684,2.58654466233247,2.08440552947533,1.79261474086228,2.03694102930226,1.87752198630802,1.50755631697634,0.714130922658041,0.975668239288994,2.52216230569906,1.99318220683897,2.23236676120482,2.29408640602033,0.863424909329478,1.01254341007058,1.50791283939272,1.08781136763742,0.983528546038072,2.48343071674259,12.6834966090356,6.09500770279457,1.80328439914343,1.00988370881749,2.52406575533005,0.390438744296638,2.36965737506079,1.67278158566786,3.34198011123591,0.849229592366497,0.404810701674894,3.50707029493574,3.16230222357219,4.17717711348349,2.2710413633323,0.890328018336276,2.44330439030364,1.81467135269789,0,2.18502572539483,1.51161778482376,1.32023555829129,2.36241514304618,2.15204603560749,1.03371317267288,1.45413491791002,0.712994756769443,1.58018378967908,2.10837217149998,2.06271086496374,8.5109901438447,3.06103859853227,3.23396709456886,2.7863814554107,3.72414490648775,2.31879462882692,3.29098041204242,5.48036908406279,2.3467170806371,1.0591603543191,1.32317038832977,3.46261131177108,2.26050197374268,2.23157822234177,1.07435109602823,2.29797259643086,2.04036585640896,9.82754100655701,1.87957968877638,2.27025554759545,1.85194527369712,3.01389531207506,2.59719032669948,2.51655990527175,3.22959016988325,3.77868921273877,3.04039942369732,4.77335309007557,1.89801596148681,2.03319467126849,1.94409613479242,1.67270636811575,0.436725127492355,1.48350781023303,1.98368293740806,2.6175594198403,2.07383957266869,3.72803587852155,6.76431526421028,1.49516546043979,2.64733584731356,5.83353565032143,3.87479470433193,3.54807863530634,2.93393096614385,4.6873578543822,9.01790362061113,7.73069186643219,5.18454011264158,2.21207784439725,2.63542779877213,2.46506297195585,2.5984164595559,1.07416017400489,2.18549490259391,3.72605893511903,3.98761723371358,2.92802704849628,4.57240839929999,4.53717833115782,3.21611006441183,3.17499077413087,3.97381467417334,3.17422537061296,2.66383144048878,2.33256027184637,3.02192309455341,3.47741269257943,1.12609485270709,3.29672923681077,2.57242054894879,1.50471631210609,5.0827665835536,5.9842280745933,8.02053718815155,3.43706364687375,8.22099023724771,6.0431511791176,9.45031500324528,12.6089936902782,11.7817026335893,14.497288729051,3.1136204275253,4.38927360741134,2.39027048055788,2.18796045361465,3.14419743941973,1.10306105070008,2.889207461421,1.64828045791115,1.28367683836726,2.02157769411038,1.77435509923168,3.01802146217722,2.1537546718073,1.92075457214608,1.89537047553524,2.38146845641537,2.43357084484197,0.77163688185482,1.23625770240992,1.91358596174717,0.342869252385415,1.06485483695602,2.14592570952589,1.0174249164263,2.07040636913727,1.4384483341585,1.09756783723664,1.05227884575137,2.71608227691724,1.68342681497322,1.66089025373844,1.37906275325789,1.22769312950907,2.63392630016142,1.15743966588685,1.24905288968973,3.04111090979031,3.65280791882107,2.48674831689496,1.54413993383661,1.85494268496337 | |phase1_expression=2.88267924788629,0.697950815278722,0.454999239389536,0.60492842261366,0,0.839396359559449,1.63528848416868,3.35720640948098,0.985521055061667,1.40438715793196,2.73948749160808,2.31339261086476,3.42401459862411,3.4093956943409,3.33109761815663,2.22722794128809,2.09868563438444,3.78554598429885,3.01651753932625,1.69755860719212,3.06155844543851,2.78014663362479,2.35079810225042,0.799962113967033,1.60586496747019,0,0.430761996159075,0.861884930743556,0.380046838912748,1.51218077855958,0.443461021310609,7.62036808151557,1.23012957516914,0,2.59966457776147,2.49351968037739,2.04169356262369,2.51118978442145,3.1253413780952,1.0470474879476,1.17646297606203,0.683045484958446,2.42755176515577,1.88845226963366,1.72340783073175,0.917733760808408,1.56478268869608,0.65407546914134,2.19686182734472,1.1665793944457,1.1198913730029,2.87505128729943,4.02678254538567,5.07753499407941,2.35265659399725,1.54355661621568,2.29226751951005,2.06268836910977,2.22548106945558,0,1.26766280701236,1.35537812827653,0.889294796111139,2.2497492932035,0.988866362566974,1.4209602298922,1.79760066311043,3.07374644257244,2.38486108309499,1.75507719831198,2.73422449756797,1.42825492201902,2.42955395046775,2.08234358665422,1.15014565221884,0.919218786610021,13.2139057199266,8.2996769755372,8.90917892886212,2.37395317914349,1.82975287204819,3.12548022334056,11.725685958058,7.87867654044352,9.47349136216223,2.06240009831567,1.85083185038834,2.60959224155421,0.757261933331841,1.43585964202892,1.73918693221007,0,0,1.61910957491345,3.24888208723835,2.24013443548668,2.52799956237153,0.852151612890289,1.03914401841148,1.06001872353102,2.11265129665021,3.84979432242953,0,0,1.73192832808971,1.77351905832569,1.01104889002957,1.48439043634778,5.95557132388495,2.3750742250372,1.21439728736295,1.52232739156071,1.61430848079241,1.65794904607885,3.29248379979973,3.26733137457156,2.22475470960936,3.32578520915797,0.884610551949874,1.45590164952668,1.32504911076236,1.93950101254089,0,7.61230072230023,6.91174132484402,1.78819938646014,3.35482348616577,1.79970819298022,4.06624726633807,9.58660092190865,9.15001205637253,2.26177833803156,9.73416193076748,3.3243009452943,7.89594569326328,2.92034273521964,1.32391173005411,2.11491850037158,2.77995034277042,3.15662783829711,2.99277018814219,2.98872735763515,2.34080768746954,2.26057226753573,2.31324097114515,2.94661556655154,2.24884138943349,3.10444044886819,2.58681591519411,3.78212160335639,3.16712023495108,2.19195732427575,1.66828349535359,1.74126083261083,2.05782136407943,2.58744546864041,2.80885274925294,0.772043721344145,3.6941254921427,3.52113813310353,2.81431271977315,2.88099298337624,5.68187365404505,3.73852040320067,3.39387648352232,1.86027155800326,1.87791380979733,3.61972561338225,3.12663714835613,1.80584210487005,2.10778904819225,1.60819986167866,2.19550115291051,1.07365135008297,10.0939175310781,2.6755199218614,1.32167513193519,0.528901133327089,2.13288250535234,2.78684006232526,2.44848176511977,1.81515172161008,1.77902435075896,1.33157938278791,1.42358718463353,1.15289268306808,1.00534083520108,1.59165177632921,1.9496408711912,0,1.08069024937347,1.1948476395262,3.60369011810855,1.5994791765362,4.50830942692322,2.24016460629846,1.55161989734101,2.73529697572242,1.89709611372772,2.50937251565324,1.72698600625512,2.09775178667061,1.48226313543574,2.00214126859313,2.35870794135844,4.04751802292737,2.02860121388503,1.20588579876208,1.2731292589071,0.863088412352432,0.810676133875177,1.09824565275233,1.43768206527355,1.11642284300551,1.5601883655728,0.757736633841335,1.07638448113147,2.41221760681684,2.58654466233247,2.08440552947533,1.79261474086228,2.03694102930226,1.87752198630802,1.50755631697634,0.714130922658041,0.975668239288994,2.52216230569906,1.99318220683897,2.23236676120482,2.29408640602033,0.863424909329478,1.01254341007058,1.50791283939272,1.08781136763742,0.983528546038072,2.48343071674259,12.6834966090356,6.09500770279457,1.80328439914343,1.00988370881749,2.52406575533005,0.390438744296638,2.36965737506079,1.67278158566786,3.34198011123591,0.849229592366497,0.404810701674894,3.50707029493574,3.16230222357219,4.17717711348349,2.2710413633323,0.890328018336276,2.44330439030364,1.81467135269789,0,2.18502572539483,1.51161778482376,1.32023555829129,2.36241514304618,2.15204603560749,1.03371317267288,1.45413491791002,0.712994756769443,1.58018378967908,2.10837217149998,2.06271086496374,8.5109901438447,3.06103859853227,3.23396709456886,2.7863814554107,3.72414490648775,2.31879462882692,3.29098041204242,5.48036908406279,2.3467170806371,1.0591603543191,1.32317038832977,3.46261131177108,2.26050197374268,2.23157822234177,1.07435109602823,2.29797259643086,2.04036585640896,9.82754100655701,1.87957968877638,2.27025554759545,1.85194527369712,3.01389531207506,2.59719032669948,2.51655990527175,3.22959016988325,3.77868921273877,3.04039942369732,4.77335309007557,1.89801596148681,2.03319467126849,1.94409613479242,1.67270636811575,0.436725127492355,1.48350781023303,1.98368293740806,2.6175594198403,2.07383957266869,3.72803587852155,6.76431526421028,1.49516546043979,2.64733584731356,5.83353565032143,3.87479470433193,3.54807863530634,2.93393096614385,4.6873578543822,9.01790362061113,7.73069186643219,5.18454011264158,2.21207784439725,2.63542779877213,2.46506297195585,2.5984164595559,1.07416017400489,2.18549490259391,3.72605893511903,3.98761723371358,2.92802704849628,4.57240839929999,4.53717833115782,3.21611006441183,3.17499077413087,3.97381467417334,3.17422537061296,2.66383144048878,2.33256027184637,3.02192309455341,3.47741269257943,1.12609485270709,3.29672923681077,2.57242054894879,1.50471631210609,5.0827665835536,5.9842280745933,8.02053718815155,3.43706364687375,8.22099023724771,6.0431511791176,9.45031500324528,12.6089936902782,11.7817026335893,14.497288729051,3.1136204275253,4.38927360741134,2.39027048055788,2.18796045361465,3.14419743941973,1.10306105070008,2.889207461421,1.64828045791115,1.28367683836726,2.02157769411038,1.77435509923168,3.01802146217722,2.1537546718073,1.92075457214608,1.89537047553524,2.38146845641537,2.43357084484197,0.77163688185482,1.23625770240992,1.91358596174717,0.342869252385415,1.06485483695602,2.14592570952589,1.0174249164263,2.07040636913727,1.4384483341585,1.09756783723664,1.05227884575137,2.71608227691724,1.68342681497322,1.66089025373844,1.37906275325789,1.22769312950907,2.63392630016142,1.15743966588685,1.24905288968973,3.04111090979031,3.65280791882107,2.48674831689496,1.54413993383661,1.85494268496337 | ||
|short_description=p2@Tomm34 | |||
}} | }} |
Latest revision as of 02:26, 26 September 2015
Short description: | p2@Tomm34 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tomm34_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -11bp_to_uc008nts.1_5end |
EntrezGene: | Tomm34 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 4.50e-11 | 54 |
brain | 8.22e-11 | 47 |
future brain | 8.22e-11 | 47 |
regional part of brain | 2.21e-10 | 46 |
pre-chordal neural plate | 2.54e-10 | 49 |
neurectoderm | 3.09e-10 | 64 |
neural plate | 3.09e-10 | 64 |
presumptive neural plate | 3.09e-10 | 64 |
structure with developmental contribution from neural crest | 4.79e-10 | 92 |
neural tube | 5.17e-10 | 52 |
neural rod | 5.17e-10 | 52 |
future spinal cord | 5.17e-10 | 52 |
neural keel | 5.17e-10 | 52 |
anterior neural tube | 1.27e-09 | 40 |
ecto-epithelium | 2.08e-09 | 73 |
central nervous system | 3.86e-09 | 73 |
regional part of forebrain | 4.50e-09 | 39 |
forebrain | 4.50e-09 | 39 |
future forebrain | 4.50e-09 | 39 |
ectoderm-derived structure | 4.69e-09 | 95 |
ectoderm | 4.69e-09 | 95 |
presumptive ectoderm | 4.69e-09 | 95 |
nervous system | 3.16e-08 | 75 |
occipital lobe | 3.95e-07 | 10 |
visual cortex | 3.95e-07 | 10 |
neocortex | 3.95e-07 | 10 |