FFCP PHASE1:Mm9::chr5:129325767..129325803,-: Difference between revisions
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|id=chr5:129325767..129325803,-
|short_description=p4@Rimbp2
|description=CAGE_peak_4_at_Rimbp2_5end
|association_with_transcript=129bp_to_uc008zsk.2_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=231760 | |EntrezGene=231760 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q80U40 | |UniProt=Q80U40 | ||
|association_with_transcript=129bp_to_uc008zsk.2_5end | |||
|cluster_id=chr5:129325767..129325803,- | |||
|description=CAGE_peak_4_at_Rimbp2_5end | |||
|id=chr5:129325767..129325803,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!1.21e-28!17;UBERON:0002021!3.84e-27!10;UBERON:0000411!3.84e-27!10;UBERON:0001950!3.84e-27!10;UBERON:0002791!3.77e-26!29;UBERON:0003528!3.77e-26!29;UBERON:0001893!3.77e-26!29;UBERON:0000956!4.31e-26!21;UBERON:0001869!4.31e-26!21;UBERON:0000203!4.31e-26!21;UBERON:0000955!2.80e-25!50;UBERON:0006238!2.80e-25!50;UBERON:0002020!2.91e-24!34;UBERON:0002616!1.58e-23!49;UBERON:0002780!4.31e-23!39;UBERON:0001890!4.31e-23!39;UBERON:0006240!4.31e-23!39;UBERON:0003080!2.14e-22!40;UBERON:0001049!8.27e-20!52;UBERON:0005068!8.27e-20!52;UBERON:0006241!8.27e-20!52;UBERON:0007135!8.27e-20!52;UBERON:0000033!6.40e-19!63;UBERON:0001017!1.01e-18!73;UBERON:0005743!1.01e-18!73;UBERON:0000073!4.57e-18!75;UBERON:0001016!4.57e-18!75;UBERON:0003056!2.08e-17!49;UBERON:0002346!3.89e-13!71;UBERON:0003075!3.89e-13!71;UBERON:0007284!3.89e-13!71;UBERON:0007811!2.19e-12!86;UBERON:0000153!4.99e-12!94;UBERON:0004121!9.84e-12!102;UBERON:0000924!9.84e-12!102;UBERON:0006601!9.84e-12!102;UBERON:0000025!4.42e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.23e-52,10;UBERON:0000411,1.23e-52,10;UBERON:0001950,1.23e-52,10;UBERON:0002619,1.12e-36,17;UBERON:0000956,5.74e-35,21;UBERON:0001869,5.74e-35,21;UBERON:0000203,5.74e-35,21;UBERON:0003528,3.21e-29,29;UBERON:0002791,3.21e-29,29;UBERON:0001893,3.21e-29,29;UBERON:0002780,1.01e-24,39;UBERON:0001890,1.01e-24,39;UBERON:0006240,1.01e-24,39;UBERON:0002020,1.13e-24,34;UBERON:0003080,4.64e-24,40;UBERON:0000955,2.96e-23,47;UBERON:0006238,2.96e-23,47;UBERON:0002616,1.11e-20,46;UBERON:0003056,2.66e-19,49;UBERON:0001049,4.44e-18,52;UBERON:0005068,4.44e-18,52;UBERON:0006241,4.44e-18,52;UBERON:0007135,4.44e-18,52;UBERON:0000073,2.44e-17,54;UBERON:0002346,2.50e-14,64;UBERON:0003075,2.50e-14,64;UBERON:0007284,2.50e-14,64;UBERON:0001017,2.86e-14,73;UBERON:0001016,7.80e-14,75;UBERON:0010371,2.55e-12,73;UBERON:0004121,1.75e-10,95;UBERON:0000924,1.75e-10,95;UBERON:0006601,1.75e-10,95;UBERON:0010314,2.33e-09,92;UBERON:0000025,3.78e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0.367472397644862,0.0958454710182364,0,0,0.255374676170375,0.46081959976873,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.32000964509802,0.753926112677186,10.4294592115366,12.2743419518559,0.62336413367868,2.92034273521964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15434922846191,0.102904612379284,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,2.89189184779626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.2015626489803,14.7304075682297,19.4784474569395,12.0297227640581,20.5524755931193,22.661816921691,16.8755625057951,12.158672487054,13.5942722695261,15.0150490408028,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249810577937946,0.233931608445408,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0.367472397644862,0.0958454710182364,0,0,0.255374676170375,0.46081959976873,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.32000964509802,0.753926112677186,10.4294592115366,12.2743419518559,0.62336413367868,2.92034273521964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15434922846191,0.102904612379284,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,2.89189184779626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.2015626489803,14.7304075682297,19.4784474569395,12.0297227640581,20.5524755931193,22.661816921691,16.8755625057951,12.158672487054,13.5942722695261,15.0150490408028,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249810577937946,0.233931608445408,0,0,0,0 | ||
|short_description=p4@Rimbp2 | |||
}} | }} |
Latest revision as of 22:34, 1 October 2015
Short description: | p4@Rimbp2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rimbp2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 129bp_to_uc008zsk.2_5end |
EntrezGene: | Rimbp2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 1.23e-52 | 10 |
visual cortex | 1.23e-52 | 10 |
neocortex | 1.23e-52 | 10 |
regional part of cerebral cortex | 1.12e-36 | 17 |
cerebral cortex | 5.74e-35 | 21 |
cerebral hemisphere | 5.74e-35 | 21 |
pallium | 5.74e-35 | 21 |
brain grey matter | 3.21e-29 | 29 |
regional part of telencephalon | 3.21e-29 | 29 |
telencephalon | 3.21e-29 | 29 |
regional part of forebrain | 1.01e-24 | 39 |
forebrain | 1.01e-24 | 39 |
future forebrain | 1.01e-24 | 39 |
gray matter | 1.13e-24 | 34 |
anterior neural tube | 4.64e-24 | 40 |
brain | 2.96e-23 | 47 |
future brain | 2.96e-23 | 47 |
regional part of brain | 1.11e-20 | 46 |
pre-chordal neural plate | 2.66e-19 | 49 |
neural tube | 4.44e-18 | 52 |
neural rod | 4.44e-18 | 52 |
future spinal cord | 4.44e-18 | 52 |
neural keel | 4.44e-18 | 52 |
regional part of nervous system | 2.44e-17 | 54 |
neurectoderm | 2.50e-14 | 64 |
neural plate | 2.50e-14 | 64 |
presumptive neural plate | 2.50e-14 | 64 |
central nervous system | 2.86e-14 | 73 |
nervous system | 7.80e-14 | 75 |
ecto-epithelium | 2.55e-12 | 73 |
ectoderm-derived structure | 1.75e-10 | 95 |
ectoderm | 1.75e-10 | 95 |
presumptive ectoderm | 1.75e-10 | 95 |
structure with developmental contribution from neural crest | 2.33e-09 | 92 |
tube | 3.78e-07 | 114 |