FFCP PHASE1:Mm9::chr7:25315664..25315712,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:25315664..25315712,+
|short_description=p1@Irgq
|description=CAGE_peak_1_at_Irgq_5end
|association_with_transcript=0bp_to_ENSMUST00000049020,NM_153134,uc00...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=210146 | |EntrezGene=210146 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VIM9 | |UniProt=Q8VIM9 | ||
|association_with_transcript=0bp_to_ENSMUST00000049020,NM_153134,uc009fpv.2_5end | |||
|cluster_id=chr7:25315664..25315712,+ | |||
|description=CAGE_peak_1_at_Irgq_5end | |||
|id=chr7:25315664..25315712,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.56e-14!23;CL:0000337!1.56e-14!23;CL:0000540!2.28e-14!33;CL:0000047!2.28e-14!33;CL:0000031!2.28e-14!33;CL:0000404!2.28e-14!33;CL:0000221!2.60e-12!44;CL:0000133!2.60e-12!44;CL:0002319!3.26e-12!43;CL:0000393!6.36e-10!39;CL:0000211!6.36e-10!39;CL:0000055!2.81e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.56e-14,23;CL:0000337,1.56e-14,23;CL:0000540,2.28e-14,33;CL:0000047,2.28e-14,33;CL:0000031,2.28e-14,33;CL:0000404,2.28e-14,33;CL:0000221,2.60e-12,44;CL:0000133,2.60e-12,44;CL:0002319,3.26e-12,43;CL:0000393,6.36e-10,39;CL:0000211,6.36e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.63e-30!73;UBERON:0005743!2.63e-30!73;UBERON:0000073!6.72e-29!75;UBERON:0001016!6.72e-29!75;UBERON:0004121!2.02e-25!102;UBERON:0000924!2.02e-25!102;UBERON:0006601!2.02e-25!102;UBERON:0002346!1.74e-24!71;UBERON:0003075!1.74e-24!71;UBERON:0007284!1.74e-24!71;UBERON:0001049!1.91e-24!52;UBERON:0005068!1.91e-24!52;UBERON:0006241!1.91e-24!52;UBERON:0007135!1.91e-24!52;UBERON:0000955!6.70e-24!50;UBERON:0006238!6.70e-24!50;UBERON:0002616!2.56e-23!49;UBERON:0000033!2.41e-22!63;UBERON:0003080!2.91e-20!40;UBERON:0003056!3.41e-20!49;UBERON:0002780!1.11e-19!39;UBERON:0001890!1.11e-19!39;UBERON:0006240!1.11e-19!39;UBERON:0002020!1.99e-17!34;UBERON:0007811!4.09e-16!86;UBERON:0000153!5.32e-15!94;UBERON:0002791!7.55e-15!29;UBERON:0003528!7.55e-15!29;UBERON:0001893!7.55e-15!29;UBERON:0000956!3.00e-10!21;UBERON:0001869!3.00e-10!21;UBERON:0000203!3.00e-10!21;UBERON:0000025!1.01e-09!114;UBERON:0004111!1.41e-08!122;UBERON:0002619!4.45e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.63e-30,73;UBERON:0001016,6.72e-29,75;UBERON:0000073,3.74e-26,54;UBERON:0001049,1.91e-24,52;UBERON:0005068,1.91e-24,52;UBERON:0006241,1.91e-24,52;UBERON:0007135,1.91e-24,52;UBERON:0004121,3.82e-24,95;UBERON:0000924,3.82e-24,95;UBERON:0006601,3.82e-24,95;UBERON:0002346,1.21e-23,64;UBERON:0003075,1.21e-23,64;UBERON:0007284,1.21e-23,64;UBERON:0000955,3.75e-22,47;UBERON:0006238,3.75e-22,47;UBERON:0002616,1.40e-21,46;UBERON:0003080,2.91e-20,40;UBERON:0003056,3.41e-20,49;UBERON:0010314,5.38e-20,92;UBERON:0010371,8.25e-20,73;UBERON:0002780,1.11e-19,39;UBERON:0001890,1.11e-19,39;UBERON:0006240,1.11e-19,39;UBERON:0002020,1.99e-17,34;UBERON:0003528,7.54e-15,29;UBERON:0002791,7.54e-15,29;UBERON:0001893,7.54e-15,29;UBERON:0000956,3.00e-10,21;UBERON:0001869,3.00e-10,21;UBERON:0000203,3.00e-10,21;UBERON:0000025,1.01e-09,114;UBERON:0004111,1.41e-08,122;UBERON:0002619,4.45e-08,17 | |||
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| ||
|short_description=p1@Irgq | |||
}} | }} |
Latest revision as of 09:38, 26 September 2015
Short description: | p1@Irgq |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Irgq_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000049020, NM_153134, uc009fpv.2_5end |
EntrezGene: | Irgq |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.56e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.56e-14 | 23 |
neuron | 2.28e-14 | 33 |
neuronal stem cell | 2.28e-14 | 33 |
neuroblast | 2.28e-14 | 33 |
electrically signaling cell | 2.28e-14 | 33 |
ectodermal cell | 2.60e-12 | 44 |
neurectodermal cell | 2.60e-12 | 44 |
neural cell | 3.26e-12 | 43 |
electrically responsive cell | 6.36e-10 | 39 |
electrically active cell | 6.36e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.63e-30 | 73 |
nervous system | 6.72e-29 | 75 |
regional part of nervous system | 3.74e-26 | 54 |
neural tube | 1.91e-24 | 52 |
neural rod | 1.91e-24 | 52 |
future spinal cord | 1.91e-24 | 52 |
neural keel | 1.91e-24 | 52 |
ectoderm-derived structure | 3.82e-24 | 95 |
ectoderm | 3.82e-24 | 95 |
presumptive ectoderm | 3.82e-24 | 95 |
neurectoderm | 1.21e-23 | 64 |
neural plate | 1.21e-23 | 64 |
presumptive neural plate | 1.21e-23 | 64 |
brain | 3.75e-22 | 47 |
future brain | 3.75e-22 | 47 |
regional part of brain | 1.40e-21 | 46 |
anterior neural tube | 2.91e-20 | 40 |
pre-chordal neural plate | 3.41e-20 | 49 |
structure with developmental contribution from neural crest | 5.38e-20 | 92 |
ecto-epithelium | 8.25e-20 | 73 |
regional part of forebrain | 1.11e-19 | 39 |
forebrain | 1.11e-19 | 39 |
future forebrain | 1.11e-19 | 39 |
gray matter | 1.99e-17 | 34 |
brain grey matter | 7.54e-15 | 29 |
regional part of telencephalon | 7.54e-15 | 29 |
telencephalon | 7.54e-15 | 29 |
cerebral cortex | 3.00e-10 | 21 |
cerebral hemisphere | 3.00e-10 | 21 |
pallium | 3.00e-10 | 21 |
tube | 1.01e-09 | 114 |
anatomical conduit | 1.41e-08 | 122 |
regional part of cerebral cortex | 4.45e-08 | 17 |