FF:12148-128F6: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005124 | ||
| | |accession_numbers=CAGE;DRX008067;DRR008939;DRZ000364;DRZ001749;DRZ011714;DRZ013099 | ||
| | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000030 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.07!116.85!TCF7;;chr4:109087445..109087463,-!p1@LEF1!2.03!107.36!LEF1;;chr2:68592406..68592424,+!p1@PLEK!1.91!79.96!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.88!74.08!TBX21;;chr2:192015701..192015743,-!p1@STAT4!1.85!93.36!STAT4;;chr7:50343634..50343717,+!p2@IKZF1!1.82!65.80!IKZF1;;chr3:63953435..63953499,+!p1@ATXN7!1.81!63.39!ATXN7;;chr2:192015750..192015793,-!p2@STAT4!1.68!62.79!STAT4;;chr5:133450365..133450444,+!p1@TCF7!1.66!194.69!TCF7;;chr2:231090433..231090469,+!p1@SP140!1.65!43.37!SP140;;chr3:27763807..27763822,-!p1@EOMES!1.59!38.10!EOMES;;chrY:21906594..21906622,-!p1@KDM5D!1.57!35.99!KDM5D;;chr9:117150254..117150271,-!p1@AKNA!1.54!89.44!AKNA;;chr3:18486354..18486377,-!p2@SATB1!1.53!40.50!SATB1;;chr5:133451347..133451358,+!p3@TCF7!1.51!31.32!TCF7;;chr1:25256756..25256774,-!p1@RUNX3!1.49!54.66!RUNX3;;chr3:71355163..71355209,-!p5@FOXP1!1.49!40.81!FOXP1;;chr19:16435625..16435682,+!p1@KLF2!1.46!862.19!KLF2;;chr3:71542615..71542644,-!p12@FOXP1!1.45!27.40!FOXP1;;chr6:106546808..106546833,+!p3@PRDM1!1.43!32.37!PRDM1;;chr11:47400078..47400106,-!p1@SPI1!1.42!25.45!SPI1;;chr7:50343895..50343936,+!p5@IKZF1!1.40!24.24!IKZF1;;chr15:60884706..60884743,-!p1@RORA!1.39!117.15!RORA;;chr17:37934365..37934387,-!p2@IKZF3!1.39!23.49!IKZF3;;chr2:68592394..68592405,+!p2@PLEK!1.39!23.34!PLEK;;chr20:50159198..50159299,-!p1@NFATC2!1.38!33.43!NFATC2;;chr14:75988771..75988826,+!p1@BATF!1.31!25.75!BATF;;chr17:38020392..38020477,-!p1@IKZF3!1.31!19.27!IKZF3;;chr19:19779619..19779670,+!p1@ZNF101!1.30!52.70!ZNF101;;chr9:3525727..3525828,-!p2@RFX3!1.29!46.23!RFX3;;chr14:99738059..99738086,-!p2@BCL11B!1.29!18.52!BCL11B;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.93!HOPX;;chr16:85932760..85932775,+!p1@IRF8!1.27!17.62!IRF8;;chr4:109090075..109090095,-!p2@LEF1!1.26!17.17!LEF1;;chr4:57522598..57522664,-!p3@HOPX!1.26!17.01!HOPX;;chr7:50344289..50344323,+!p1@IKZF1!1.25!16.86!IKZF1;;chr1:26697243..26697258,-!p1@ZNF683!1.25!16.71!ZNF683;;chr8:67525443..67525459,-!p2@MYBL1!1.21!22.59!MYBL1;;chr3:71542684..71542720,-!p18@FOXP1!1.21!15.36!FOXP1;;chr3:18480217..18480239,-!p3@SATB1!1.21!15.06!SATB1;;chr13:41593425..41593480,-!p1@ELF1!1.19!92.00!ELF1;;chr2:231090471..231090504,+!p2@SP140!1.18!14.30!SP140;;chr11:128392085..128392232,-!p1@ETS1!1.17!458.50!ETS1;;chr10:8096772..8096787,+!p2@GATA3!1.17!16.11!GATA3;;chr4:57522674..57522699,-!p5@HOPX!1.17!13.85!HOPX;;chr20:56195474..56195506,-!p1@ZBP1!1.17!13.70!ZBP1;;chr6:391743..391759,+!p1@IRF4!1.16!13.40!IRF4;;chr11:128392273..128392308,-!p2@ETS1!1.13!53.00!ETS1;;chr10:8096631..8096660,+!p1@GATA3!1.12!14.91!GATA3;;chr11:128563948..128564003,+!p1@FLI1!1.10!139.13!FLI1;;chr6:91006518..91006570,-!p1@BACH2!1.09!26.20!BACH2;;chr6:106546731..106546755,+!p5@PRDM1!1.09!11.44!PRDM1;;chr7:50344251..50344288,+!p3@IKZF1!1.09!11.29!IKZF1;;chr17:38020557..38020572,-!p4@IKZF3!1.09!11.29!IKZF3;;chr16:88752889..88752921,-!p1@SNAI3!1.08!12.95!SNAI3;;chr4:109089901..109089930,-!p3@LEF1!1.07!10.69!LEF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.06!22.89!ZBTB25;;chr4:57522513..57522548,-!p4@HOPX!1.06!10.54!HOPX;;chrX:106960285..106960299,-!p1@TSC22D3!1.05!277.06!TSC22D3;;chr7:50348268..50348366,+!p4@IKZF1!1.04!9.94!IKZF1;;chrX:49121165..49121179,-!p1@FOXP3!1.03!9.79!FOXP3;;chr1:26697189..26697205,-!p2@ZNF683!1.02!9.49!ZNF683;;chr17:38020481..38020506,-!p7@IKZF3!1.02!9.49!IKZF3;;chr16:3313791..3313834,+!p2@ZNF263!1.01!20.63!ZNF263;;chrX:101186981..101187030,-!p1@ZMAT1!1.00!30.12!ZMAT1;;chr16:68119324..68119364,+!p1@NFATC3!0.99!40.50!NFATC3;;chr9:114287433..114287513,+!p1@ZNF483!0.99!23.04!ZNF483;;chr12:54778471..54778528,-!p1@ZNF385A!0.99!8.88!ZNF385A;;chr17:37934280..37934299,-!p6@IKZF3!0.99!8.88!IKZF3;;chr3:18487057..18487105,-!p4@SATB1!0.99!8.73!SATB1;;chr6:45296048..45296082,+!p1@RUNX2!0.97!9.64!RUNX2;;chr6:106546786..106546802,+!p6@PRDM1!0.97!8.43!PRDM1;;chr3:71542651..71542683,-!p22@FOXP1!0.97!8.28!FOXP1;;chr17:37934204..37934241,-!p3@IKZF3!0.97!8.28!IKZF3;;chr4:38665769..38665801,+!p2@KLF3!0.96!75.59!KLF3;;chr21:36421535..36421610,-!p2@RUNX1!0.96!29.51!RUNX1;;chr14:75988831..75988847,+!p2@BATF!0.96!8.13!BATF;;chr2:178128250..178128293,-!p6@NFE2L2!0.95!20.33!NFE2L2;;chr19:38085768..38085821,+!p1@ZNF540!0.95!11.90!ZNF540;;chr4:109088940..109089037,-!p4@LEF1!0.95!7.98!LEF1;;chr1:25291475..25291511,-!p2@RUNX3!0.95!7.83!RUNX3;;chr21:36421347..36421380,-!p8@RUNX1!0.95!7.83!RUNX1;;chr19:19729477..19729542,-!p1@PBX4!0.93!16.56!PBX4;;chr13:74707894..74707947,-!p6@KLF12!0.93!8.43!KLF12;;chr3:18466787..18466839,-!p1@SATB1!0.92!34.18!SATB1;;chr4:109088089..109088101,-!p11@LEF1!0.92!7.23!LEF1;;chr20:51588873..51588953,+!p1@TSHZ2!0.91!9.64!TSHZ2;;chr1:92951607..92951661,-!p1@GFI1!0.91!7.08!GFI1;;chr20:56195525..56195556,-!p2@ZBP1!0.91!7.08!ZBP1;;chr2:145277640..145277771,-!p1@ZEB2!0.90!97.27!ZEB2;;chr6:143266297..143266356,-!p1@HIVEP2!0.90!34.78!HIVEP2;;chr8:60031619..60031676,-!p1@TOX!0.90!15.66!TOX;;chr4:109088130..109088163,-!p13@LEF1!0.90!6.93!LEF1;;chr3:71179699..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chr7:148787768..148787825,-!p1@ZNF786!0.55!9.79!ZNF786;;chr16:29817433..29817468,+!p8@MAZ!0.55!9.64!MAZ;;chr14:64971288..64971316,-!p2@ZBTB25!0.55!9.49!ZBTB25;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.55!8.58!ZNF525;;chr19:44331461..44331482,+!p3@ZNF283!0.55!4.67!ZNF283;;chr3:141121847..141121868,+!p5@ZBTB38!0.55!4.22!ZBTB38;;chr14:69262947..69262986,-!p3@ZFP36L1!0.55!3.31!ZFP36L1;;chr4:149363544..149363583,-!p3@NR3C2!0.55!3.01!NR3C2;;chr22:21771656..21771662,+!p1@HIC2!0.55!2.56!HIC2;;chr4:109089966..109089977,-!p15@LEF1!0.55!2.56!LEF1;;chr11:47399947..47399961,-!p3@SPI1!0.55!2.56!SPI1;;chrX:47696239..47696254,+!p3@ZNF81!0.55!2.56!ZNF81;;chr3:141121164..141121249,+!p1@ZBTB38!0.54!54.21!ZBTB38;;chr19:37663572..37663630,-!p1@ZNF585A!0.54!36.59!ZNF585A;;chr8:71316021..71316068,-!p1@NCOA2!0.54!28.76!NCOA2;;chr7:64363638..64363667,+!p1@ZNF273!0.54!15.51!ZNF273;;chr19:11959532..11959593,+!p1@ZNF439!0.54!11.44!ZNF439;;chr4:4291837..4291859,-!p2@LYAR!0.54!9.79!LYAR;;chr19:40502938..40502987,+!p1@ZNF546!0.54!7.38!ZNF546;;chr19:56632858..56632903,-!p2@ZNF787!0.54!7.08!ZNF787;;chr6:15249097..15249115,+!p7@JARID2!0.54!3.61!JARID2;;chr19:19932513..19932569,-!p1@ZNF506!0.53!57.97!ZNF506;;chr2:174828545..174828644,-!p1@SP3!0.53!47.13!SP3;;chr1:249132410..249132456,+!p1@ZNF672!0.53!22.74!ZNF672;;chr1:14026671..14026705,+!p2@PRDM2!0.53!18.37!PRDM2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.53!16.71!ZNF10;;chr4:57775059..57775139,+!p2@REST!0.53!10.39!REST;;chr19:12405645..12405685,-!p1@ZNF44!0.53!10.24!ZNF44;;chr19:37096194..37096235,+!p1@ZNF382!0.53!9.19!ZNF382;;chr6:157098579..157098634,+!p4@ARID1B!0.53!6.32!ARID1B;;chr16:79634595..79634620,-!p2@MAF!0.53!4.97!MAF;;chr12:46123273..46123329,+!p3@ARID2!0.53!4.67!ARID2;;chr4:149365827..149365870,-!p5@NR3C2!0.53!2.41!NR3C2;;chrX:134429952..134429971,-!p3@ZNF75D!0.53!2.41!ZNF75D;;chr14:75988851..75988862,+!p3@BATF!0.53!2.41!BATF;;chr14:99737850..99737852,-!p3@BCL11B!0.53!2.41!BCL11B;;chr16:88752861..88752884,-!p2@SNAI3!0.53!2.41!SNAI3;;chr2:8822176..8822196,+!p1@ID2!0.52!422.21!ID2;;chr19:21950362..21950388,-!p1@ZNF100!0.52!26.80!ZNF100;;chr10:3827417..3827428,-!p3@KLF6!0.52!25.30!KLF6;;chr18:77160282..77160343,+!p2@NFATC1!0.52!18.22!NFATC1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.52!15.66!LRRFIP1;;chr8:42698194..42698239,-!p2@THAP1!0.52!12.95!THAP1;;chr19:20959098..20959117,+!p1@ZNF66P!0.52!11.90!ZNF66P;;chr19:38270215..38270251,-!p1@ZNF573!0.52!11.90!ZNF573;;chr7:99156212..99156244,+!p3@ZNF655!0.52!10.99!ZNF655;;chr1:10754477..10754517,-!p1@CASZ1!0.52!4.37!CASZ1;;chrX:48901030..48901050,-!p4@TFE3!0.52!3.16!TFE3;;chr11:9482551..9482580,+!p1@ZNF143!0.51!38.10!ZNF143;;chr19:52772832..52772861,+!p1@ZNF766!0.51!29.51!ZNF766;;chr14:64970494..64970578,-!p1@ZBTB25!0.51!29.21!ZBTB25;;chr4:106068026..106068084,+!p1@TET2!0.51!26.20!TET2;;chr19:9434841..9434886,+!p1@ZNF559!0.51!14.61!ZNF559;;chr19:23870007..23870022,-!p2@ZNF675!0.51!8.88!ZNF675;;chr7:21467802..21467840,+!p3@SP4!0.51!5.42!SP4;;chr4:146859626..146859669,-!p2@ZNF827!0.51!3.61!ZNF827;;chr2:145271342..145271377,-!p5@ZEB2!0.51!2.26!ZEB2;;chr19:38085739..38085762,+!p3@ZNF540!0.51!2.26!ZNF540;;chr19:38183166..38183184,-!p3@ZNF781!0.51!2.26!ZNF781;;chr1:151798601..151798617,-!p3@RORC!0.51!2.26!RORC;;chr6:106547079..106547114,+!p9@PRDM1!0.51!2.26!PRDM1;;chr6:122720765..122720831,+!p1@HSF2!0.50!38.10!HSF2;;chr19:37064145..37064216,-!p1@ZNF529!0.50!24.09!ZNF529;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.50!11.44!ZNF816;;chr10:43133950..43133994,-!p2@ZNF33B!0.50!9.79!ZNF33B;;chr19:36980429..36980448,-!p1@ZNF566!0.50!7.68!ZNF566;;chr11:128392309..128392350,-!p3@ETS1!0.50!6.17!ETS1;;chr8:71316428..71316459,-!p2@NCOA2!0.50!4.22!NCOA2;;chrX:101187036..101187056,-!p2@ZMAT1!0.50!2.41!ZMAT1;;chr8:41909496..41909512,-!p1@KAT6A!0.49!84.32!KAT6A;;chr7:86781734..86781777,+!p1@DMTF1!0.49!51.80!DMTF1;;chr1:235491462..235491510,-!p1@ARID4B!0.49!50.44!ARID4B;;chr10:38299546..38299686,+!p1@ZNF33A!0.49!40.20!ZNF33A;;chr19:21688387..21688432,+!p1@ZNF429!0.49!16.41!ZNF429;;chr21:27107672..27107698,+!p2@GABPA!0.49!11.29!GABPA;;chr19:53289995..53290050,-!p1@ZNF600!0.49!10.99!ZNF600;;chr19:58238958..58239000,-!p1@ZNF671!0.49!10.99!ZNF671;;chr19:38085633..38085706,-!p1@ZNF571!0.49!6.63!ZNF571;;chr19:58071166..58071189,-!p2@ZNF550!0.49!6.17!ZNF550;;chr2:208394728..208394739,+!p5@CREB1!0.49!5.72!CREB1;;chr19:11877805..11877832,+!p2@ZNF441!0.49!4.07!ZNF441;;chr6:35227247..35227280,+!p3@ZNF76!0.49!3.01!ZNF76;;chr20:51589732..51589769,+!p3@TSHZ2!0.49!2.11!TSHZ2;;chr16:88752836..88752852,-!p3@SNAI3!0.49!2.11!SNAI3;;chr4:467892..467963,-!p1@ABCA11P,p1@ZNF721!0.48!69.11!ZNF721;;chr1:59165724..59165751,-!p1@MYSM1!0.48!61.89!MYSM1;;chr19:45971246..45971265,+!p1@FOSB!0.48!51.20!FOSB;;chr1:53018743..53018777,-!p1@ZCCHC11!0.48!46.23!ZCCHC11;;chr16:31885093..31885165,+!p1@ZNF267!0.48!42.01!ZNF267;;chrX:119384629..119384720,+!p1@ZBTB33!0.48!36.44!ZBTB33;;chr1:22778337..22778356,+!p1@ZBTB40!0.48!33.13!ZBTB40;;chr15:31619326..31619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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 41: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12148-128F6 | |||
|is_a=EFO:0002091;;FF:0000030;;FF:0000210 | |||
|is_obsolete= | |||
|library_id=CNhs12201 | |||
|library_id_phase_based=2:CNhs12201 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12148 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12148 | |||
|name=CD8+ T Cells (pluriselect), donor090325, donation1 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs12201,LSID976,release010,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0459905845356749,0,-0.277362132193514,-0.251946071440554,0,0,0,0.0609149782727745,0,0,0,0,0,0,0.161884462700249,0,0,-0.153323010348428,0,0,0,0,0.0609149782727745,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.257039082593372,0,0,0,0,0,0,0,0,0.05672721023729,0,0,0,0,0,-0.0532312380037313,0,-0.0969923612426051,0,0,-0.097343627213097,0,0.111399720486512,0,0,0,0,0,0,0,0,1.04487409244206,0,0,0,0,0,0,-0.0413520993944747,0,0,0,0,0,-0.0504125515893149,-0.0507859427386936,0,0,0,-0.0928909500508461,-0.130255171345744,0,0,0.0304574891363872,0,-0.0371203729649319,-0.138477200800895,0,0,0,0,0,0.0304574891363872,0,0,0,0,0,0,0,0,0,0,0,-0.0392098711471053,0,0,0,-0.233000982852579,-1.44752147595343,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0371203729649319,0,0,0.114327445550711,0,0,0,0,0,0,0,0,-0.132851429734853,0,-0.359758773201297,-0.0291876969727606,0,0.0609149782727745,0.399583585777071,0,0,0,0,0,0,0.0609149782727745,0.0609149782727745,0,-0.128119866952565,0,-0.0504125515893149,0,0.551422795686569,0,0,0,0.491804256702821,0,-0.117094338374154,-0.0683442610773682,0,0,0,0,-0.0674228907055092,0,0.0410049789065084,-0.0827201683234173,0,-0.541436858146143,0.0675227866583312,0,0,0,-0.069462935657061,-0.675048922653816,0,0,0.425695072341118,0.201052310931404,0,0,-0.391044581551635,0,-0.147955368277175,-0.220318626421574,0,-0.119430962022669,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0832375021215876,-0.0304099808375785,0,0,0,0.366714213927812,0,0,-0.373286155956567,-0.236408567746147,0.0802597858563834,-0.391542458169187,0,-0.0586386324525319,-0.164978506366894,-0.166150432144338,-0.173448570009372,-0.086486871098364,-0.189981719549847,-0.134781820874974,-0.0455354343846541,-0.216857499370169,-0.0337449427343709,-0.0507859427386936,-0.0290298989397289,-1.11708106273639,0.0609893808954902,0,0,-0.0775089264793031,0.7361527553964,0,-0.0526847715355563,-0.118091334175627,-0.130183095375773,-0.613823713700354,-0.444703225457238,-0.494064494531874,-0.454179727222,-0.0395325284566706,0.0939863427899745,0,-0.4215723249037,-0.157184768807959,0,-0.0217205168396151,-0.112008567244876,-0.473306205677012,0.504635374570876,-0.0338204300367893,-0.369650016260269,0.045983184473343,0,-0.892788770392561,-0.130407973951252,0,-0.0441779086167431,-0.299235594644737,0.114327445550711,0,0.108296690147915,0,0,0.0186155762874118,0.686085581625668,0.259632668182425,0,0.054327015804744,-0.110882088413875,0.373335530876607,0,0.300612729980258,-0.0878433160600943,-0.0185325161346176,-0.180294683947318,0,-0.228117025565903,-0.297723923533737,-0.164990696339003,-0.260510342691488,-0.0584468268118252,0.389989613973824,0.198871076288041,-0.0928909500508461,0.157016224914864,-0.159982129122215,-0.0881268324752877,-0.146524497957436,0.200765465111059,0.393905234562357,-0.0731065973982518,-0.251500387373906,0,0.240950994914873,0,0.114832783257383,0.00405737191107586,0.341703975586736,-0.296682656915859,0.916407617240898,0.0938218916678464,0,-0.194940630557851,-0.7272159595012,0,-0.117294080624504,-0.0084503285812751,0.204743961790246,-0.150367083334639,-0.583368520961871,-0.0897748805858984,-0.081825733903839,0,-0.729165180116882,0,0,-0.230848499201133,-0.235476037764389,0,-0.401577589482074,-0.548287935940622,-0.489888595644583,-0.115971073434934,0,0,-0.645700337992725,0,0,-0.545013085545256,-0.00268986686502717,-0.415039362168387,0.217594967989113,-0.0402847519897875,-0.108622809454255,0,0,0.270699395646102,0.87359551681437,-0.136314332332099,0,0,-0.110110478485486,-0.116628112990133,0,0.439247786041151,0,-0.11432345920764,0,0.0455734938131116,0,0,0,0,0,-0.133033989453904,0.0441046151979286,0,-0.22386472944343,0,0,0,0,0,0.0609149782727745,0,0,-0.390744283550744,0.0680103146978935,-0.12301741567642,0,0.0609149782727745,0,0,0.0280276920039067,-0.0413520993944747,0.161884462700249,-0.131862706497632,0,0.0304574891363872,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.52308379245695,0,0,0,-0.27695440160179,0,0,0,0,0.30141734227168,0,0,-0.388179078828999,0,-0.10762166114791,0.0803025831534077,0,0.356145694777316,0.0877734832390575,-1.30962034064846,0,0,-0.200432153517113,0,0,0.219689666524532,-0.0823702229656663,0,0,0,0,0,0,0,0.0609149782727745,0.404995650401366,0,0,0,0,0,0,0,0,0,0,0,0.133549976879822,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,0.0635151888328398,-0.205197956541594,0.0304574891363872,0.764803858984127,0,0,0,0,0,0,-0.309541476962993,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.503892142881109,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0624041077626732,-1.31337749514127,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,1.81717699274015,0,0,0,-0.104796384789156,0,-0.0459905845356749,0,0,0.0609149782727745,0,0,0,0.0571637227753555,0,0,0,0,0,0,0,0.0304574891363872,0,0.0609149782727745,0.0304574891363872,0,0,0,-0.361335636052232,-0.0247755787802223,-0.0847407678858945,0,0,0,-0.175464629857686,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0.204743961790246,0,0,0,0,0,0,0,0.0609149782727745,0,0,0,0,0,0,0,-0.00420420470955921,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.468252368704511,0,0,0,0,0,0,-0.0758361287528103,-0.283220399823148,-0.152389349994263,0,0,0,-0.054385572482455,0,0,-0.0793015225933507,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0.0304574891363872,0.159535703670479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0.551422795686569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204743961790246,0,0,0,0,0,0,0,0,0,0.026903614997358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0987587841063324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0609149782727745,0,0,0,0,0,0.0609149782727745,0,-0.34451388867762,0,0,0,0,0,0,0,0,0,0.0609149782727745,0,0,0,0.0126929030337203,0,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| |||
|rna_box=128 | |||
|rna_catalog_number= | |||
|rna_concentration=0.16381 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.32 | |||
|rna_od260/280=2.07 | |||
|rna_position=F6 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=128F6 | |||
|rna_weight_ug=4.42287 | |||
|sample_age= | |||
|sample_category=primary cells | |||
|sample_cell_catalog= | |||
|sample_cell_line= | |||
|sample_cell_lot= | |||
|sample_cell_type=T cell, CD8+ | |||
|sample_collaboration=Matched_genome_OSC(contact:Al Forrest) | |||
|sample_company= | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease= | |||
|sample_donor(cell lot)=ID090325-2 | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.26236556556513e-222!GO:0043227;membrane-bound organelle;1.60797398746054e-194!GO:0043231;intracellular membrane-bound organelle;3.48565792127772e-194!GO:0043226;organelle;1.05173623101214e-180!GO:0043229;intracellular organelle;4.46740876153793e-180!GO:0005737;cytoplasm;1.56818185458477e-132!GO:0044422;organelle part;2.15886302625099e-106!GO:0005634;nucleus;6.28346346059124e-105!GO:0044446;intracellular organelle part;6.28346346059124e-105!GO:0043170;macromolecule metabolic process;3.4608915946309e-98!GO:0044237;cellular metabolic process;1.19464276928971e-94!GO:0044444;cytoplasmic part;2.46389770044254e-91!GO:0044238;primary metabolic process;4.62564327280459e-91!GO:0032991;macromolecular complex;5.36245966465721e-88!GO:0030529;ribonucleoprotein complex;2.93819718375137e-85!GO:0003723;RNA binding;5.15426944022961e-84!GO:0044428;nuclear part;1.66645322896103e-78!GO:0043283;biopolymer metabolic process;1.29187466045811e-67!GO:0043233;organelle lumen;9.4541951572675e-66!GO:0031974;membrane-enclosed lumen;9.4541951572675e-66!GO:0010467;gene expression;9.98548826979396e-66!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.68483605372228e-57!GO:0006396;RNA processing;2.01453823503056e-56!GO:0005515;protein binding;2.79902115085607e-55!GO:0006412;translation;7.82154665766087e-53!GO:0033036;macromolecule localization;1.47489629980615e-48!GO:0005739;mitochondrion;5.56341865036554e-48!GO:0031981;nuclear lumen;6.92075896556322e-48!GO:0019538;protein metabolic process;3.01262377068857e-47!GO:0016071;mRNA metabolic process;4.86708144468968e-47!GO:0015031;protein transport;4.69032104259263e-46!GO:0003676;nucleic acid binding;1.83732611362287e-45!GO:0044267;cellular protein metabolic process;2.67999235898103e-45!GO:0005840;ribosome;3.77041620749394e-45!GO:0044260;cellular macromolecule metabolic process;1.51484882197896e-44!GO:0045184;establishment of protein localization;1.53315806626377e-44!GO:0008104;protein localization;1.74504827018837e-44!GO:0008380;RNA splicing;2.1693681115116e-41!GO:0043234;protein complex;2.56613480071336e-41!GO:0006397;mRNA processing;1.66331999137111e-40!GO:0003735;structural constituent of ribosome;1.57450247126451e-39!GO:0009059;macromolecule biosynthetic process;3.33826754116915e-39!GO:0016070;RNA metabolic process;1.49472468257759e-36!GO:0031090;organelle membrane;6.98325392347654e-36!GO:0033279;ribosomal subunit;1.63417276636546e-35!GO:0031967;organelle envelope;7.82818410786152e-35!GO:0044429;mitochondrial part;1.02738495805893e-34!GO:0031975;envelope;1.72552362466318e-34!GO:0005829;cytosol;2.9492591465971e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.2739583109403e-31!GO:0046907;intracellular transport;2.79434693009207e-31!GO:0005654;nucleoplasm;4.47558145101236e-30!GO:0006886;intracellular protein transport;5.305594592094e-30!GO:0005681;spliceosome;5.98100833469541e-30!GO:0044249;cellular biosynthetic process;7.40483690216275e-30!GO:0016043;cellular component organization and biogenesis;2.79424190680259e-29!GO:0009058;biosynthetic process;6.87839670908979e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.86124572208812e-28!GO:0006259;DNA metabolic process;6.25127600199498e-28!GO:0065003;macromolecular complex assembly;3.81542149464748e-26!GO:0044445;cytosolic part;2.97008487368783e-25!GO:0044451;nucleoplasm part;3.12964758397868e-24!GO:0000166;nucleotide binding;8.92697329044173e-24!GO:0006512;ubiquitin cycle;3.38376005448218e-23!GO:0051649;establishment of cellular localization;6.05163747335219e-23!GO:0051641;cellular localization;6.05480008821257e-23!GO:0022607;cellular component assembly;8.386787431065e-23!GO:0005740;mitochondrial envelope;6.9437581212299e-22!GO:0006996;organelle organization and biogenesis;2.91427734453471e-21!GO:0031966;mitochondrial membrane;6.39403312945632e-21!GO:0019866;organelle inner membrane;6.62380073871164e-21!GO:0012501;programmed cell death;1.01712181625538e-20!GO:0006915;apoptosis;1.16490910291713e-20!GO:0022618;protein-RNA complex assembly;3.82454739133056e-20!GO:0008219;cell death;8.75072263660234e-20!GO:0016265;death;8.75072263660234e-20!GO:0005730;nucleolus;4.79151873163141e-19!GO:0005743;mitochondrial inner membrane;5.0746170703563e-19!GO:0006119;oxidative phosphorylation;6.49464903320335e-19!GO:0044265;cellular macromolecule catabolic process;6.70198487375699e-19!GO:0016874;ligase activity;7.60006283307945e-19!GO:0015935;small ribosomal subunit;1.17866911061257e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.6706501487619e-18!GO:0016604;nuclear body;2.9079610188172e-18!GO:0019941;modification-dependent protein catabolic process;4.21782426143013e-18!GO:0043632;modification-dependent macromolecule catabolic process;4.21782426143013e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.59969654582068e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.83445685297146e-18!GO:0016462;pyrophosphatase activity;6.87669439118102e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;7.36701418869065e-18!GO:0043412;biopolymer modification;7.63416945579647e-18!GO:0044257;cellular protein catabolic process;8.09267545122974e-18!GO:0015934;large ribosomal subunit;8.7017242703928e-18!GO:0017111;nucleoside-triphosphatase activity;1.08458209858372e-17!GO:0043285;biopolymer catabolic process;1.04646868818965e-16!GO:0006605;protein targeting;1.10089653160215e-16!GO:0050794;regulation of cellular process;1.22222300900613e-16!GO:0044455;mitochondrial membrane part;1.77856077482081e-16!GO:0032553;ribonucleotide binding;1.98689748665397e-16!GO:0032555;purine ribonucleotide binding;1.98689748665397e-16!GO:0043228;non-membrane-bound organelle;3.2499139237526e-16!GO:0043232;intracellular non-membrane-bound organelle;3.2499139237526e-16!GO:0017076;purine nucleotide binding;4.20606201088393e-16!GO:0008135;translation factor activity, nucleic acid binding;5.31545992121086e-16!GO:0008134;transcription factor binding;1.2060149936764e-15!GO:0031980;mitochondrial lumen;1.60872166365883e-15!GO:0005759;mitochondrial matrix;1.60872166365883e-15!GO:0006457;protein folding;2.0920786039887e-15!GO:0006464;protein modification process;2.21683030053276e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.12335461015259e-15!GO:0006913;nucleocytoplasmic transport;3.67278197989262e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;4.91644583609025e-15!GO:0000375;RNA splicing, via transesterification reactions;4.91644583609025e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.91644583609025e-15!GO:0006974;response to DNA damage stimulus;5.19591232741853e-15!GO:0016607;nuclear speck;6.4391821388802e-15!GO:0051169;nuclear transport;6.7448326009787e-15!GO:0009057;macromolecule catabolic process;1.23810060671412e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.75451599109231e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.04482535903112e-14!GO:0042981;regulation of apoptosis;4.7086139982794e-14!GO:0043687;post-translational protein modification;6.7141476224275e-14!GO:0005524;ATP binding;6.7141476224275e-14!GO:0043067;regulation of programmed cell death;7.03296910548058e-14!GO:0012505;endomembrane system;9.58619481450662e-14!GO:0019222;regulation of metabolic process;1.07986570553158e-13!GO:0005635;nuclear envelope;1.22842041928361e-13!GO:0032559;adenyl ribonucleotide binding;1.77440669319969e-13!GO:0005746;mitochondrial respiratory chain;1.93345953565204e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;2.02923987817334e-13!GO:0006281;DNA repair;2.11732872116075e-13!GO:0051276;chromosome organization and biogenesis;2.15654280764478e-13!GO:0030554;adenyl nucleotide binding;5.13267848266454e-13!GO:0030163;protein catabolic process;6.18312232653124e-13!GO:0006323;DNA packaging;8.09624148011526e-13!GO:0016887;ATPase activity;9.1659892764573e-13!GO:0042623;ATPase activity, coupled;9.7369877400148e-13!GO:0006413;translational initiation;1.67058222282071e-12!GO:0042254;ribosome biogenesis and assembly;2.05999930440696e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.26997492381138e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.55517426323026e-12!GO:0003954;NADH dehydrogenase activity;2.55517426323026e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.55517426323026e-12!GO:0031965;nuclear membrane;2.72205612290617e-12!GO:0004386;helicase activity;3.27337163562098e-12!GO:0044248;cellular catabolic process;3.72755328351011e-12!GO:0048193;Golgi vesicle transport;3.76948788056107e-12!GO:0003743;translation initiation factor activity;4.13624875705596e-12!GO:0048770;pigment granule;6.27030614074285e-12!GO:0042470;melanosome;6.27030614074285e-12!GO:0007049;cell cycle;2.15254150937234e-11!GO:0031323;regulation of cellular metabolic process;2.15767893210429e-11!GO:0016192;vesicle-mediated transport;2.80879658829731e-11!GO:0008026;ATP-dependent helicase activity;2.92691624760192e-11!GO:0050789;regulation of biological process;3.35727580605815e-11!GO:0016568;chromatin modification;3.75750113587497e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.79821282079631e-11!GO:0042773;ATP synthesis coupled electron transport;4.79821282079631e-11!GO:0006446;regulation of translational initiation;7.63977939706618e-11!GO:0008639;small protein conjugating enzyme activity;8.08658028667047e-11!GO:0017038;protein import;9.23471912615037e-11!GO:0005761;mitochondrial ribosome;1.320599918901e-10!GO:0000313;organellar ribosome;1.320599918901e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.45519627637274e-10!GO:0045271;respiratory chain complex I;1.45519627637274e-10!GO:0005747;mitochondrial respiratory chain complex I;1.45519627637274e-10!GO:0004842;ubiquitin-protein ligase activity;1.48034486545745e-10!GO:0051082;unfolded protein binding;1.79987755075616e-10!GO:0005794;Golgi apparatus;1.8618257436705e-10!GO:0006350;transcription;2.7545611694293e-10!GO:0044453;nuclear membrane part;2.75690674367705e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.31179448860156e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.41326200002882e-10!GO:0005694;chromosome;4.48121836630071e-10!GO:0019787;small conjugating protein ligase activity;5.68258405818429e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.18380056477611e-10!GO:0050657;nucleic acid transport;7.94376308511454e-10!GO:0051236;establishment of RNA localization;7.94376308511454e-10!GO:0050658;RNA transport;7.94376308511454e-10!GO:0003712;transcription cofactor activity;8.51469934762544e-10!GO:0006403;RNA localization;9.74283053918172e-10!GO:0010468;regulation of gene expression;1.09441295550626e-09!GO:0008270;zinc ion binding;1.19193568349009e-09!GO:0051186;cofactor metabolic process;2.06809834788315e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.33392759687025e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.58050488991746e-09!GO:0005643;nuclear pore;3.06685095016032e-09!GO:0016072;rRNA metabolic process;5.22333636877928e-09!GO:0043566;structure-specific DNA binding;5.79966942017121e-09!GO:0019829;cation-transporting ATPase activity;6.53885383151113e-09!GO:0006399;tRNA metabolic process;6.57784307102201e-09!GO:0006364;rRNA processing;6.67163456777835e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.29882200239856e-09!GO:0051246;regulation of protein metabolic process;8.74053842756221e-09!GO:0005768;endosome;8.99675364519031e-09!GO:0007243;protein kinase cascade;9.9098538075561e-09!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.13366590908766e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.37578099307039e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.38681790938867e-08!GO:0009719;response to endogenous stimulus;1.58664047234576e-08!GO:0044427;chromosomal part;1.64747387844659e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.10430207842314e-08!GO:0051028;mRNA transport;2.52378826370868e-08!GO:0008565;protein transporter activity;2.79282052973601e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.72986706137934e-08!GO:0048523;negative regulation of cellular process;3.90760975411481e-08!GO:0016881;acid-amino acid ligase activity;4.1518615616604e-08!GO:0022402;cell cycle process;5.51940434353814e-08!GO:0009259;ribonucleotide metabolic process;6.06283576481885e-08!GO:0006333;chromatin assembly or disassembly;6.74768211226522e-08!GO:0051170;nuclear import;7.41311393630226e-08!GO:0065002;intracellular protein transport across a membrane;7.7129541673156e-08!GO:0006793;phosphorus metabolic process;9.25575570326285e-08!GO:0006796;phosphate metabolic process;9.25575570326285e-08!GO:0006606;protein import into nucleus;1.02125764416731e-07!GO:0051726;regulation of cell cycle;1.02739686497897e-07!GO:0032774;RNA biosynthetic process;1.06797838937587e-07!GO:0003697;single-stranded DNA binding;1.18150138900672e-07!GO:0000074;regulation of progression through cell cycle;1.2048445094101e-07!GO:0009260;ribonucleotide biosynthetic process;1.22837196846916e-07!GO:0006366;transcription from RNA polymerase II promoter;1.31671066568686e-07!GO:0006351;transcription, DNA-dependent;1.42096050629878e-07!GO:0006164;purine nucleotide biosynthetic process;1.50188534031652e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.55856316938408e-07!GO:0016787;hydrolase activity;1.94674593268812e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.17612666573499e-07!GO:0015986;ATP synthesis coupled proton transport;2.25735033725409e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.25735033725409e-07!GO:0006163;purine nucleotide metabolic process;2.26447700408661e-07!GO:0000245;spliceosome assembly;2.30594125830644e-07!GO:0006732;coenzyme metabolic process;2.32605315986792e-07!GO:0045449;regulation of transcription;2.46004142826437e-07!GO:0046930;pore complex;2.54719255835664e-07!GO:0005783;endoplasmic reticulum;2.68806661784259e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.71795341959643e-07!GO:0065004;protein-DNA complex assembly;2.97704772943767e-07!GO:0065007;biological regulation;3.00039593488648e-07!GO:0044432;endoplasmic reticulum part;3.45988984912756e-07!GO:0009150;purine ribonucleotide metabolic process;3.48978360087575e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.68800751600094e-07!GO:0032446;protein modification by small protein conjugation;3.69293490247828e-07!GO:0004298;threonine endopeptidase activity;4.38809064046254e-07!GO:0003713;transcription coactivator activity;4.47887174050771e-07!GO:0065009;regulation of a molecular function;5.01175009376335e-07!GO:0006916;anti-apoptosis;5.71069468616331e-07!GO:0009060;aerobic respiration;6.4257506031009e-07!GO:0043069;negative regulation of programmed cell death;6.79517910123579e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.86568687193645e-07!GO:0016310;phosphorylation;7.40745374909076e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.03108410137013e-07!GO:0016779;nucleotidyltransferase activity;8.23187865948137e-07!GO:0006917;induction of apoptosis;9.97514416172397e-07!GO:0043065;positive regulation of apoptosis;1.00233182955418e-06!GO:0000151;ubiquitin ligase complex;1.06786923453292e-06!GO:0046914;transition metal ion binding;1.07462331150229e-06!GO:0016567;protein ubiquitination;1.1242533789391e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.1491067576785e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.1491067576785e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.1491067576785e-06!GO:0043066;negative regulation of apoptosis;1.18313348091238e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.35548583081849e-06!GO:0048519;negative regulation of biological process;1.58485768735858e-06!GO:0012502;induction of programmed cell death;1.6343971882849e-06!GO:0043068;positive regulation of programmed cell death;1.65959555463715e-06!GO:0000785;chromatin;1.85686924416248e-06!GO:0043038;amino acid activation;2.07513799241663e-06!GO:0006418;tRNA aminoacylation for protein translation;2.07513799241663e-06!GO:0043039;tRNA aminoacylation;2.07513799241663e-06!GO:0009615;response to virus;2.08804896454821e-06!GO:0006754;ATP biosynthetic process;2.59514099182222e-06!GO:0006753;nucleoside phosphate metabolic process;2.59514099182222e-06!GO:0016563;transcription activator activity;2.65801663679256e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.74462093758896e-06!GO:0009056;catabolic process;3.03114274862287e-06!GO:0051168;nuclear export;3.03114274862287e-06!GO:0005773;vacuole;3.2528748826419e-06!GO:0031324;negative regulation of cellular metabolic process;3.28638936882417e-06!GO:0006260;DNA replication;3.35058010582e-06!GO:0007242;intracellular signaling cascade;3.66065681707012e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.66065681707012e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.66065681707012e-06!GO:0003724;RNA helicase activity;3.76578450384731e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.09097550513379e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.09097550513379e-06!GO:0005789;endoplasmic reticulum membrane;4.31381568897678e-06!GO:0009055;electron carrier activity;4.4386581392587e-06!GO:0006613;cotranslational protein targeting to membrane;4.64492563084347e-06!GO:0045333;cellular respiration;4.71269345904417e-06!GO:0006417;regulation of translation;4.77247631149932e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.27110661687165e-06!GO:0006355;regulation of transcription, DNA-dependent;5.80909699725433e-06!GO:0051188;cofactor biosynthetic process;5.83713611204579e-06!GO:0046034;ATP metabolic process;5.8766995478228e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.9616581426947e-06!GO:0009144;purine nucleoside triphosphate metabolic process;5.9616581426947e-06!GO:0005793;ER-Golgi intermediate compartment;7.00832052775583e-06!GO:0045259;proton-transporting ATP synthase complex;7.04610342621058e-06!GO:0000323;lytic vacuole;7.51932634180173e-06!GO:0005764;lysosome;7.51932634180173e-06!GO:0009141;nucleoside triphosphate metabolic process;8.47940180009248e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.31728281678607e-06!GO:0030120;vesicle coat;9.43902327433103e-06!GO:0030662;coated vesicle membrane;9.43902327433103e-06!GO:0005770;late endosome;9.48990452471145e-06!GO:0006401;RNA catabolic process;9.65276181547116e-06!GO:0016564;transcription repressor activity;1.39389590670554e-05!GO:0006461;protein complex assembly;1.41071269839923e-05!GO:0003677;DNA binding;1.41488836530495e-05!GO:0045786;negative regulation of progression through cell cycle;1.8240050707119e-05!GO:0048475;coated membrane;1.88879434447128e-05!GO:0030117;membrane coat;1.88879434447128e-05!GO:0016481;negative regulation of transcription;1.91246151977039e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.0504874563911e-05!GO:0009892;negative regulation of metabolic process;2.2758853237565e-05!GO:0006099;tricarboxylic acid cycle;2.33926465809461e-05!GO:0046356;acetyl-CoA catabolic process;2.33926465809461e-05!GO:0044440;endosomal part;2.37087973567907e-05!GO:0010008;endosome membrane;2.37087973567907e-05!GO:0001772;immunological synapse;2.44137321704248e-05!GO:0008234;cysteine-type peptidase activity;2.48826510013894e-05!GO:0016740;transferase activity;2.64904739325181e-05!GO:0019899;enzyme binding;2.9819436943825e-05!GO:0006612;protein targeting to membrane;3.02400982381806e-05!GO:0031326;regulation of cellular biosynthetic process;3.46429511401617e-05!GO:0005813;centrosome;3.70444494697889e-05!GO:0003690;double-stranded DNA binding;3.79673619537461e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.87642911817158e-05!GO:0008632;apoptotic program;3.97956935786339e-05!GO:0009108;coenzyme biosynthetic process;5.0260081213125e-05!GO:0016363;nuclear matrix;5.07385393800675e-05!GO:0009967;positive regulation of signal transduction;5.29739646960317e-05!GO:0043623;cellular protein complex assembly;5.43004949377883e-05!GO:0006084;acetyl-CoA metabolic process;5.97540408640762e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.5137379645973e-05!GO:0005525;GTP binding;6.57102868290272e-05!GO:0006402;mRNA catabolic process;6.8481978605258e-05!GO:0007005;mitochondrion organization and biogenesis;8.00934988963895e-05!GO:0006310;DNA recombination;8.00934988963895e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.09493939422307e-05!GO:0015399;primary active transmembrane transporter activity;9.09493939422307e-05!GO:0042110;T cell activation;9.44092250036568e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.95315830878094e-05!GO:0044431;Golgi apparatus part;0.000106213377678843!GO:0008186;RNA-dependent ATPase activity;0.000109161332434718!GO:0046649;lymphocyte activation;0.0001163879206158!GO:0042101;T cell receptor complex;0.000131408862658365!GO:0048522;positive regulation of cellular process;0.00014336882822759!GO:0003924;GTPase activity;0.000150503147018373!GO:0005815;microtubule organizing center;0.000155950752498409!GO:0009889;regulation of biosynthetic process;0.000180471193038157!GO:0009109;coenzyme catabolic process;0.000211396859924435!GO:0045321;leukocyte activation;0.000226332890674504!GO:0003899;DNA-directed RNA polymerase activity;0.000236517472600631!GO:0005885;Arp2/3 protein complex;0.000244588316388566!GO:0060090;molecular adaptor activity;0.000248649191703058!GO:0007264;small GTPase mediated signal transduction;0.000271632323542794!GO:0051187;cofactor catabolic process;0.000280837760523405!GO:0000278;mitotic cell cycle;0.000311519118142337!GO:0004004;ATP-dependent RNA helicase activity;0.000338608822847671!GO:0008654;phospholipid biosynthetic process;0.000353238631338067!GO:0006752;group transfer coenzyme metabolic process;0.000367739910815659!GO:0031497;chromatin assembly;0.000367739910815659!GO:0050790;regulation of catalytic activity;0.000386840114245992!GO:0006334;nucleosome assembly;0.000396900784859158!GO:0030384;phosphoinositide metabolic process;0.000437130799857434!GO:0043021;ribonucleoprotein binding;0.000440177492461055!GO:0005762;mitochondrial large ribosomal subunit;0.000451890273852316!GO:0000315;organellar large ribosomal subunit;0.000451890273852316!GO:0006891;intra-Golgi vesicle-mediated transport;0.000497373714805353!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000528936021501355!GO:0003729;mRNA binding;0.000535364390946071!GO:0044452;nucleolar part;0.000584760941888167!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000607015177400128!GO:0005798;Golgi-associated vesicle;0.000621614946661807!GO:0016197;endosome transport;0.000624314316223508!GO:0005774;vacuolar membrane;0.00064754350781534!GO:0002376;immune system process;0.000667617107169029!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000683931594540879!GO:0006261;DNA-dependent DNA replication;0.00069047475511943!GO:0051427;hormone receptor binding;0.000743964217174986!GO:0032561;guanyl ribonucleotide binding;0.000743964217174986!GO:0019001;guanyl nucleotide binding;0.000743964217174986!GO:0019783;small conjugating protein-specific protease activity;0.000787861470551598!GO:0031072;heat shock protein binding;0.000807762034520405!GO:0043492;ATPase activity, coupled to movement of substances;0.000840963983078152!GO:0005667;transcription factor complex;0.000842017985895025!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000858635022888918!GO:0004843;ubiquitin-specific protease activity;0.000882563954544133!GO:0032940;secretion by cell;0.00089087805301152!GO:0008047;enzyme activator activity;0.000891177511073002!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000906801883405399!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000979696846249603!GO:0007265;Ras protein signal transduction;0.00100795790178388!GO:0009117;nucleotide metabolic process;0.00101008288309262!GO:0006611;protein export from nucleus;0.0010118089261426!GO:0004674;protein serine/threonine kinase activity;0.00112339144247983!GO:0008033;tRNA processing;0.00116059978333416!GO:0019843;rRNA binding;0.00117103449756212!GO:0043681;protein import into mitochondrion;0.00119775989388259!GO:0005769;early endosome;0.00119812829648473!GO:0000139;Golgi membrane;0.00119877508185934!GO:0005765;lysosomal membrane;0.00119877508185934!GO:0048500;signal recognition particle;0.00122787708934648!GO:0006383;transcription from RNA polymerase III promoter;0.00125129461237115!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00125459951581051!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00130694475757474!GO:0046489;phosphoinositide biosynthetic process;0.00130800784021159!GO:0006650;glycerophospholipid metabolic process;0.00134644494848815!GO:0051252;regulation of RNA metabolic process;0.00136422944935608!GO:0006818;hydrogen transport;0.00137441235541359!GO:0015992;proton transport;0.00139687069749273!GO:0035257;nuclear hormone receptor binding;0.00140659869578574!GO:0006352;transcription initiation;0.00140871506165443!GO:0045892;negative regulation of transcription, DNA-dependent;0.00141187281863854!GO:0004518;nuclease activity;0.00142044321562098!GO:0031902;late endosome membrane;0.0014337675923408!GO:0048518;positive regulation of biological process;0.00147710204200446!GO:0016251;general RNA polymerase II transcription factor activity;0.00152633299252009!GO:0004221;ubiquitin thiolesterase activity;0.00158112939027653!GO:0048471;perinuclear region of cytoplasm;0.00165154847532713!GO:0030695;GTPase regulator activity;0.00175620773071363!GO:0044437;vacuolar part;0.00180934334321792!GO:0045045;secretory pathway;0.00181137967506122!GO:0031252;leading edge;0.00183044677507315!GO:0003714;transcription corepressor activity;0.00186912114264362!GO:0000314;organellar small ribosomal subunit;0.00200839446159501!GO:0005763;mitochondrial small ribosomal subunit;0.00200839446159501!GO:0008168;methyltransferase activity;0.00211716083705251!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00220930336552826!GO:0003725;double-stranded RNA binding;0.00221940917296218!GO:0006414;translational elongation;0.00223865431739265!GO:0007034;vacuolar transport;0.00230659775593904!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0023304559176361!GO:0045047;protein targeting to ER;0.0023304559176361!GO:0022415;viral reproductive process;0.00236063017412563!GO:0016741;transferase activity, transferring one-carbon groups;0.0024127917776269!GO:0005070;SH3/SH2 adaptor activity;0.00244523643900192!GO:0008312;7S RNA binding;0.00246646363241343!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00258364134587886!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00258364134587886!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00258364134587886!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00260917796489436!GO:0005684;U2-dependent spliceosome;0.00294418901756142!GO:0003746;translation elongation factor activity;0.00294418901756142!GO:0051251;positive regulation of lymphocyte activation;0.00305386239282679!GO:0005083;small GTPase regulator activity;0.00305386239282679!GO:0015631;tubulin binding;0.00313036691620465!GO:0008624;induction of apoptosis by extracellular signals;0.00313287929141065!GO:0004527;exonuclease activity;0.00316374200343327!GO:0016859;cis-trans isomerase activity;0.00361024678481858!GO:0006607;NLS-bearing substrate import into nucleus;0.00369625561662167!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00381450533580365!GO:0051092;activation of NF-kappaB transcription factor;0.00422817331071619!GO:0032200;telomere organization and biogenesis;0.00445631981191234!GO:0000723;telomere maintenance;0.00445631981191234!GO:0030658;transport vesicle membrane;0.00453000164970964!GO:0032259;methylation;0.00459916234947598!GO:0006302;double-strand break repair;0.00466077644663835!GO:0019867;outer membrane;0.0046637886992085!GO:0009966;regulation of signal transduction;0.00469573710328414!GO:0043488;regulation of mRNA stability;0.00476119461045934!GO:0043487;regulation of RNA stability;0.00476119461045934!GO:0046474;glycerophospholipid biosynthetic process;0.00476119461045934!GO:0051336;regulation of hydrolase activity;0.0048560449748282!GO:0051090;regulation of transcription factor activity;0.0048560449748282!GO:0006405;RNA export from nucleus;0.00486637875682505!GO:0003711;transcription elongation regulator activity;0.00487935974961689!GO:0000087;M phase of mitotic cell cycle;0.00493639196930729!GO:0005741;mitochondrial outer membrane;0.00507975737965458!GO:0006338;chromatin remodeling;0.00510695943041109!GO:0006950;response to stress;0.00510695943041109!GO:0002757;immune response-activating signal transduction;0.00514274458938768!GO:0003684;damaged DNA binding;0.0052770707007077!GO:0047485;protein N-terminus binding;0.00536105780714821!GO:0042802;identical protein binding;0.00543194397074712!GO:0031968;organelle outer membrane;0.0056488387157156!GO:0022411;cellular component disassembly;0.00569647331905282!GO:0006497;protein amino acid lipidation;0.00584162260157496!GO:0031625;ubiquitin protein ligase binding;0.00599213252259342!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0063132395599473!GO:0051301;cell division;0.0064182711667813!GO:0051087;chaperone binding;0.0066387166996583!GO:0051098;regulation of binding;0.00696032554250598!GO:0007006;mitochondrial membrane organization and biogenesis;0.00702018131479109!GO:0043087;regulation of GTPase activity;0.00702123246259403!GO:0006289;nucleotide-excision repair;0.00711402534812707!GO:0007067;mitosis;0.00739710262745606!GO:0000049;tRNA binding;0.00742899264240965!GO:0030118;clathrin coat;0.00748040096881298!GO:0008017;microtubule binding;0.0074917672861806!GO:0043414;biopolymer methylation;0.00755152800135429!GO:0016853;isomerase activity;0.00777154171765879!GO:0005096;GTPase activator activity;0.00777154171765879!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00803365046957126!GO:0001775;cell activation;0.0082471277863099!GO:0007050;cell cycle arrest;0.00845271581855646!GO:0016790;thiolester hydrolase activity;0.00847574687847555!GO:0002764;immune response-regulating signal transduction;0.00868646637013821!GO:0016605;PML body;0.00909057574086454!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00914993248153272!GO:0046822;regulation of nucleocytoplasmic transport;0.00925174441708654!GO:0051539;4 iron, 4 sulfur cluster binding;0.00931422795045787!GO:0003678;DNA helicase activity;0.00935589911983455!GO:0006376;mRNA splice site selection;0.00946949466978913!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00946949466978913!GO:0003682;chromatin binding;0.00963866145942031!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00964480807443385!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00964480807443385!GO:0051920;peroxiredoxin activity;0.00966051471300831!GO:0042287;MHC protein binding;0.00970320180340788!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00977434903323132!GO:0022403;cell cycle phase;0.0100169533902039!GO:0005669;transcription factor TFIID complex;0.0100872811308471!GO:0001819;positive regulation of cytokine production;0.010113593080726!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0107717335219647!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0108260594988305!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0110220066920081!GO:0005637;nuclear inner membrane;0.0111805937500922!GO:0022890;inorganic cation transmembrane transporter activity;0.0112244978197007!GO:0030660;Golgi-associated vesicle membrane;0.0114090877041234!GO:0016584;nucleosome positioning;0.011892429882628!GO:0004532;exoribonuclease activity;0.0121385979112829!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0121385979112829!GO:0000781;chromosome, telomeric region;0.0121610223799946!GO:0031982;vesicle;0.0122006959258543!GO:0008097;5S rRNA binding;0.0126150533949556!GO:0006626;protein targeting to mitochondrion;0.0127695174262459!GO:0051249;regulation of lymphocyte activation;0.0130529864540668!GO:0000209;protein polyubiquitination;0.0137246751547859!GO:0050865;regulation of cell activation;0.0137431496146408!GO:0018193;peptidyl-amino acid modification;0.0137431496146408!GO:0015630;microtubule cytoskeleton;0.0138034458424619!GO:0030663;COPI coated vesicle membrane;0.013813422043529!GO:0030126;COPI vesicle coat;0.013813422043529!GO:0031124;mRNA 3'-end processing;0.013813422043529!GO:0022406;membrane docking;0.0140841177556292!GO:0048278;vesicle docking;0.0140841177556292!GO:0051789;response to protein stimulus;0.0140884384687403!GO:0006986;response to unfolded protein;0.0140884384687403!GO:0046966;thyroid hormone receptor binding;0.0145359963298782!GO:0006506;GPI anchor biosynthetic process;0.0146152221295462!GO:0050870;positive regulation of T cell activation;0.0149886458987989!GO:0046467;membrane lipid biosynthetic process;0.0150026023576804!GO:0016272;prefoldin complex;0.0155887198225372!GO:0008287;protein serine/threonine phosphatase complex;0.0160168701835516!GO:0006904;vesicle docking during exocytosis;0.0166855225726849!GO:0045454;cell redox homeostasis;0.0168295431628993!GO:0008408;3'-5' exonuclease activity;0.0172132377567181!GO:0004197;cysteine-type endopeptidase activity;0.0172925927010996!GO:0030137;COPI-coated vesicle;0.0174862063817908!GO:0015980;energy derivation by oxidation of organic compounds;0.0175352413622208!GO:0033116;ER-Golgi intermediate compartment membrane;0.0175352413622208!GO:0051540;metal cluster binding;0.0175352413622208!GO:0051536;iron-sulfur cluster binding;0.0175352413622208!GO:0030521;androgen receptor signaling pathway;0.0175769540552616!GO:0043621;protein self-association;0.0177114341514644!GO:0009165;nucleotide biosynthetic process;0.0178444625915822!GO:0005869;dynactin complex;0.0179944909594158!GO:0009112;nucleobase metabolic process;0.0181971104753712!GO:0051052;regulation of DNA metabolic process;0.0185398868806087!GO:0030518;steroid hormone receptor signaling pathway;0.0185643267368981!GO:0016044;membrane organization and biogenesis;0.0185643267368981!GO:0005657;replication fork;0.0187292071964417!GO:0000059;protein import into nucleus, docking;0.0187890951463246!GO:0042158;lipoprotein biosynthetic process;0.0188419801852045!GO:0006505;GPI anchor metabolic process;0.0189796254690529!GO:0000738;DNA catabolic process, exonucleolytic;0.0190182684590755!GO:0019079;viral genome replication;0.0192928908300059!GO:0030867;rough endoplasmic reticulum membrane;0.0195014637022739!GO:0005048;signal sequence binding;0.0197652849546241!GO:0005521;lamin binding;0.0199524688856997!GO:0031123;RNA 3'-end processing;0.0199524688856997!GO:0030258;lipid modification;0.0209001512693415!GO:0004722;protein serine/threonine phosphatase activity;0.021633283738057!GO:0006914;autophagy;0.0216523478899838!GO:0006955;immune response;0.0219331072180366!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0219806648107308!GO:0015002;heme-copper terminal oxidase activity;0.0219806648107308!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0219806648107308!GO:0004129;cytochrome-c oxidase activity;0.0219806648107308!GO:0050863;regulation of T cell activation;0.0220404851329573!GO:0051223;regulation of protein transport;0.0221885467125366!GO:0005832;chaperonin-containing T-complex;0.0222232672124742!GO:0030880;RNA polymerase complex;0.0224165680987172!GO:0048468;cell development;0.0229890246106294!GO:0007004;telomere maintenance via telomerase;0.0229890246106294!GO:0044438;microbody part;0.0230396088930054!GO:0044439;peroxisomal part;0.0230396088930054!GO:0046983;protein dimerization activity;0.0233292315481675!GO:0050852;T cell receptor signaling pathway;0.0233680173314043!GO:0030833;regulation of actin filament polymerization;0.023452020044022!GO:0007041;lysosomal transport;0.0236221257832979!GO:0032984;macromolecular complex disassembly;0.0239405932623251!GO:0004177;aminopeptidase activity;0.0239881902890783!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0242791897138732!GO:0008139;nuclear localization sequence binding;0.0243205906800078!GO:0006919;caspase activation;0.0244750041361693!GO:0015923;mannosidase activity;0.025149736702895!GO:0000118;histone deacetylase complex;0.0253090338226557!GO:0031988;membrane-bound vesicle;0.0257342784887249!GO:0008022;protein C-terminus binding;0.0266342623005962!GO:0009116;nucleoside metabolic process;0.0273785227325283!GO:0019058;viral infectious cycle;0.0281582464496898!GO:0040029;regulation of gene expression, epigenetic;0.0281747586117964!GO:0043022;ribosome binding;0.028446543507397!GO:0004576;oligosaccharyl transferase activity;0.0286140704398782!GO:0042608;T cell receptor binding;0.0287887397176102!GO:0031410;cytoplasmic vesicle;0.0287887397176102!GO:0043281;regulation of caspase activity;0.0289105392735914!GO:0045058;T cell selection;0.0289105392735914!GO:0030127;COPII vesicle coat;0.0291746991884181!GO:0012507;ER to Golgi transport vesicle membrane;0.0291746991884181!GO:0051091;positive regulation of transcription factor activity;0.0300910436179144!GO:0006839;mitochondrial transport;0.0300973200109504!GO:0045069;regulation of viral genome replication;0.0302490233323072!GO:0030119;AP-type membrane coat adaptor complex;0.030809238327091!GO:0030041;actin filament polymerization;0.031087147069149!GO:0030134;ER to Golgi transport vesicle;0.0310919571357669!GO:0006378;mRNA polyadenylation;0.0314386537711953!GO:0048487;beta-tubulin binding;0.0314995653212375!GO:0005791;rough endoplasmic reticulum;0.0320892257216993!GO:0016788;hydrolase activity, acting on ester bonds;0.0330077557479061!GO:0050851;antigen receptor-mediated signaling pathway;0.034726849559231!GO:0000786;nucleosome;0.0349934276508601!GO:0031903;microbody membrane;0.0353703989628704!GO:0005778;peroxisomal membrane;0.0353703989628704!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0355061771994181!GO:0016585;chromatin remodeling complex;0.0355061771994181!GO:0016505;apoptotic protease activator activity;0.0356116079937551!GO:0001784;phosphotyrosine binding;0.0356211641314429!GO:0032318;regulation of Ras GTPase activity;0.0357205795299016!GO:0008250;oligosaccharyl transferase complex;0.0357205795299016!GO:0019904;protein domain specific binding;0.0377909995649016!GO:0030125;clathrin vesicle coat;0.0378450120655289!GO:0030665;clathrin coated vesicle membrane;0.0378450120655289!GO:0030131;clathrin adaptor complex;0.038313542361405!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0387740856876177!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.038792819631518!GO:0000428;DNA-directed RNA polymerase complex;0.038792819631518!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0391286207134921!GO:0050811;GABA receptor binding;0.0392141144781361!GO:0000178;exosome (RNase complex);0.0393764808972304!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0400363474554564!GO:0010257;NADH dehydrogenase complex assembly;0.0400363474554564!GO:0033108;mitochondrial respiratory chain complex assembly;0.0400363474554564!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0400801572355186!GO:0051219;phosphoprotein binding;0.0409119953050014!GO:0008180;signalosome;0.0409552045802846!GO:0045603;positive regulation of endothelial cell differentiation;0.0415743287008757!GO:0000339;RNA cap binding;0.041658757067998!GO:0000303;response to superoxide;0.0416826937875319!GO:0007021;tubulin folding;0.042165578815283!GO:0045309;protein phosphorylated amino acid binding;0.0422439083466359!GO:0043280;positive regulation of caspase activity;0.0426575154377127!GO:0043624;cellular protein complex disassembly;0.0429857524031916!GO:0002440;production of molecular mediator of immune response;0.0435268966964812!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0435512917300698!GO:0030522;intracellular receptor-mediated signaling pathway;0.0437472030232211!GO:0002378;immunoglobulin biosynthetic process;0.0437472030232211!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0437472030232211!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0437472030232211!GO:0008276;protein methyltransferase activity;0.0437699858035024!GO:0000287;magnesium ion binding;0.0438952117134422!GO:0004402;histone acetyltransferase activity;0.0441333149442838!GO:0004468;lysine N-acetyltransferase activity;0.0441333149442838!GO:0006144;purine base metabolic process;0.0441735152477865!GO:0003988;acetyl-CoA C-acyltransferase activity;0.044452327190273!GO:0008094;DNA-dependent ATPase activity;0.044452327190273!GO:0008637;apoptotic mitochondrial changes;0.044452327190273!GO:0007259;JAK-STAT cascade;0.0447742440907183!GO:0000090;mitotic anaphase;0.0447742440907183!GO:0051322;anaphase;0.0447742440907183!GO:0005777;peroxisome;0.0449218811692573!GO:0042579;microbody;0.0449218811692573!GO:0048002;antigen processing and presentation of peptide antigen;0.0449441567226071!GO:0043241;protein complex disassembly;0.0449915323298574!GO:0046979;TAP2 binding;0.045688364515687!GO:0046977;TAP binding;0.045688364515687!GO:0046978;TAP1 binding;0.045688364515687!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0458904690463307!GO:0031901;early endosome membrane;0.0459766856442106!GO:0005784;translocon complex;0.0461714813452088!GO:0000119;mediator complex;0.0462063215159893!GO:0000279;M phase;0.0469556614404046!GO:0050857;positive regulation of antigen receptor-mediated signaling pathway;0.0476396888139367!GO:0006406;mRNA export from nucleus;0.0479090740570727!GO:0031461;cullin-RING ubiquitin ligase complex;0.0479548017396952!GO:0016311;dephosphorylation;0.0481231424763573!GO:0016023;cytoplasmic membrane-bound vesicle;0.0484872706351492 | |||
|sample_id=12148 | |||
|sample_note= | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=blood | |||
|top_motifs=ELF1,2,4:2.63529550636;RUNX1..3:2.27513047476;RORA:2.16212482132;ETS1,2:2.08956907869;T:2.05670579376;STAT1,3:1.86036088088;PDX1:1.83377990879;PAX3,7:1.76322894271;FOX{D1,D2}:1.74682510301;FOXO1,3,4:1.66813753446;DMAP1_NCOR{1,2}_SMARC:1.60153762551;SPI1:1.6008162909;CDX1,2,4:1.54771721068;TLX2:1.53980488977;ELK1,4_GABP{A,B1}:1.51100642458;IRF1,2:1.46313295388;HMX1:1.45666181011;BPTF:1.39209646949;SPIB:1.38382815034;FOX{F1,F2,J1}:1.36934351805;RFX2..5_RFXANK_RFXAP:1.29543124996;PAX6:1.08430815518;IRF7:1.0801313043;TGIF1:1.07173387606;CRX:0.991712883879;CREB1:0.924197548773;LEF1_TCF7_TCF7L1,2:0.83228906606;PBX1:0.789536913823;GATA6:0.786009484431;BREu{core}:0.746876822367;NANOG{mouse}:0.732716775411;FOXN1:0.677971375442;SPZ1:0.67792724817;ATF5_CREB3:0.670538206249;NFATC1..3:0.637100309271;NFIL3:0.633022845021;NRF1:0.602247714077;VSX1,2:0.562876611705;FOX{I1,J2}:0.541571016619;YY1:0.527860203283;PAX2:0.523448310576;FOXA2:0.51477439133;NFKB1_REL_RELA:0.508518529314;SREBF1,2:0.491655581206;ALX1:0.46466016954;EP300:0.45484104658;NKX2-2,8:0.42881501876;IKZF2:0.414415719008;MYOD1:0.4082334221;ZEB1:0.368783719768;FOXQ1:0.349238089121;HBP1_HMGB_SSRP1_UBTF:0.318438357024;RBPJ:0.294211111162;SNAI1..3:0.271613425779;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.266682264077;ZNF143:0.252311823022;SOX5:0.246768182212;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.239153167918;AHR_ARNT_ARNT2:0.226432488727;RFX1:0.220667606072;TAL1_TCF{3,4,12}:0.199764426716;ATF4:0.198188325131;RXRA_VDR{dimer}:0.19225483829;FOXP3:0.17995449719;HES1:0.177721542048;ATF2:0.139666932173;AR:0.135583364128;NFIX:0.134037273889;ZNF148:0.133441452242;STAT5{A,B}:0.112326312269;GCM1,2:0.10134960345;MAFB:0.0963467045397;MYB:0.0923398963344;NANOG:0.0693093641197;NKX6-1,2:0.0633585515165;JUN:0.0227073872909;CEBPA,B_DDIT3:0.0159729792777;HOX{A6,A7,B6,B7}:0.00482933245469;OCT4_SOX2{dimer}:0.00286933047197;CUX2:-0.0151826210731;HLF:-0.0466548606633;NKX2-1,4:-0.053285417658;NR5A1,2:-0.0632702369695;LMO2:-0.0654533459332;TBX4,5:-0.0706057617195;SOX2:-0.0893052255413;HMGA1,2:-0.0903948597744;PAX4:-0.0942608376583;ADNP_IRX_SIX_ZHX:-0.119273783354;NFE2L1:-0.123003121258;NR1H4:-0.139102928694;STAT2,4,6:-0.180886311394;NFY{A,B,C}:-0.195748330936;FOSL2:-0.212864062499;ZBTB16:-0.236206517927;PRRX1,2:-0.257477362892;POU1F1:-0.262012721649;HNF1A:-0.269979894115;E2F1..5:-0.295051672363;HNF4A_NR2F1,2:-0.299783022748;GLI1..3:-0.300182802825;NR3C1:-0.308685360497;PAX8:-0.311207959065;MYFfamily:-0.369929461458;NHLH1,2:-0.371782678969;TFAP4:-0.374977405248;POU2F1..3:-0.379613089305;DBP:-0.385030158848;FOXD3:-0.392148578142;HIF1A:-0.394735656063;ATF6:-0.405160024185;BACH2:-0.416312134773;FOS_FOS{B,L1}_JUN{B,D}:-0.437709838252;NFE2L2:-0.44889925794;PAX5:-0.468477428978;ZNF238:-0.477860618519;POU5F1:-0.486325762018;MZF1:-0.489986907624;MTF1:-0.506577334674;RREB1:-0.517822670125;ALX4:-0.530576218502;FOXP1:-0.531870493096;ESR1:-0.56073825654;ZNF423:-0.567615424532;NFE2:-0.584059991793;GFI1:-0.591726531225;HOXA9_MEIS1:-0.612144794398;MEF2{A,B,C,D}:-0.622956768076;ZFP161:-0.629632863939;REST:-0.641092090413;ARID5B:-0.662823353337;SRF:-0.667744666919;FOXM1:-0.691334720572;GATA4:-0.692206570635;ZBTB6:-0.69885940465;EGR1..3:-0.716087141453;HAND1,2:-0.719862577369;SMAD1..7,9:-0.730803281543;NKX3-1:-0.751457132262;MAZ:-0.753639277245;PATZ1:-0.755024218651;MTE{core}:-0.777340460075;SOX{8,9,10}:-0.786863484408;ZNF384:-0.79998973618;MED-1{core}:-0.802841205945;TFCP2:-0.806514856085;NKX3-2:-0.829405037601;HSF1,2:-0.863661448988;NKX2-3_NKX2-5:-0.869325880767;PPARG:-0.90771905706;EVI1:-0.910005470578;PRDM1:-0.913027915096;XCPE1{core}:-0.928805371207;TP53:-0.983546057945;KLF4:-1.01672323161;bHLH_family:-1.03037844829;AIRE:-1.03464812498;XBP1:-1.03473527418;LHX3,4:-1.0420388113;GTF2I:-1.07329439427;HOX{A5,B5}:-1.10066702654;GFI1B:-1.1426007593;EN1,2:-1.14585012121;SP1:-1.14685322625;CDC5L:-1.17144367386;MYBL2:-1.17899598808;EBF1:-1.20419000052;RXR{A,B,G}:-1.21251516673;SOX17:-1.26178282636;TFAP2B:-1.26666163714;TLX1..3_NFIC{dimer}:-1.33168303089;GZF1:-1.35896145763;PITX1..3:-1.36990753447;TFDP1:-1.38064509112;HOX{A4,D4}:-1.38943899221;UFEwm:-1.41144321932;ZIC1..3:-1.43757538583;ONECUT1,2:-1.45050461798;HIC1:-1.50252373481;NR6A1:-1.50826273857;ESRRA:-1.53072204083;TBP:-1.55261757168;TFAP2{A,C}:-1.62486464176;GTF2A1,2:-1.62531923099;POU6F1:-1.65674572561;TEAD1:-1.67390743111;TOPORS:-1.83873507674;TEF:-1.86852564003;PAX1,9:-1.89242382072;FOXL1:-2.06738457861;POU3F1..4:-2.07960492938;IKZF1:-2.38537268292 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12148-128F6;search_select_hide=table117:FF:12148-128F6 | |||
}} | }} |
Latest revision as of 18:32, 4 June 2020
Name: | CD8+ T Cells (pluriselect), donor090325, donation1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12201 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12201
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12201
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.451 |
10 | 10 | 0.0303 |
100 | 100 | 0.704 |
101 | 101 | 0.349 |
102 | 102 | 0.694 |
103 | 103 | 0.103 |
104 | 104 | 0.541 |
105 | 105 | 0.125 |
106 | 106 | 0.74 |
107 | 107 | 0.0366 |
108 | 108 | 0.489 |
109 | 109 | 0.0743 |
11 | 11 | 0.151 |
110 | 110 | 0.592 |
111 | 111 | 0.472 |
112 | 112 | 0.444 |
113 | 113 | 0.18 |
114 | 114 | 0.336 |
115 | 115 | 0.28 |
116 | 116 | 0.369 |
117 | 117 | 0.00334 |
118 | 118 | 0.466 |
119 | 119 | 0.932 |
12 | 12 | 0.46 |
120 | 120 | 0.5 |
121 | 121 | 0.874 |
122 | 122 | 0.367 |
123 | 123 | 0.697 |
124 | 124 | 0.181 |
125 | 125 | 0.828 |
126 | 126 | 0.148 |
127 | 127 | 0.321 |
128 | 128 | 0.81 |
129 | 129 | 0.221 |
13 | 13 | 0.614 |
130 | 130 | 0.865 |
131 | 131 | 0.354 |
132 | 132 | 0.526 |
133 | 133 | 0.981 |
134 | 134 | 0.639 |
135 | 135 | 0.417 |
136 | 136 | 0.913 |
137 | 137 | 0.0264 |
138 | 138 | 0.218 |
139 | 139 | 0.0745 |
14 | 14 | 0.327 |
140 | 140 | 0.226 |
141 | 141 | 0.871 |
142 | 142 | 0.827 |
143 | 143 | 3.76691e-4 |
144 | 144 | 0.798 |
145 | 145 | 0.551 |
146 | 146 | 0.239 |
147 | 147 | 0.0127 |
148 | 148 | 0.242 |
149 | 149 | 0.921 |
15 | 15 | 0.133 |
150 | 150 | 0.996 |
151 | 151 | 0.435 |
152 | 152 | 0.33 |
153 | 153 | 0.882 |
154 | 154 | 0.816 |
155 | 155 | 0.0616 |
156 | 156 | 0.841 |
157 | 157 | 0.31 |
158 | 158 | 0.151 |
159 | 159 | 0.114 |
16 | 16 | 0.939 |
160 | 160 | 0.791 |
161 | 161 | 0.19 |
162 | 162 | 0.12 |
163 | 163 | 0.874 |
164 | 164 | 0.416 |
165 | 165 | 0.589 |
166 | 166 | 0.678 |
167 | 167 | 0.534 |
168 | 168 | 0.0274 |
169 | 169 | 0.993 |
17 | 17 | 0.885 |
18 | 18 | 0.818 |
19 | 19 | 0.228 |
2 | 2 | 0.666 |
20 | 20 | 0.959 |
21 | 21 | 0.736 |
22 | 22 | 0.855 |
23 | 23 | 0.653 |
24 | 24 | 0.599 |
25 | 25 | 0.0333 |
26 | 26 | 0.981 |
27 | 27 | 0.024 |
28 | 28 | 0.317 |
29 | 29 | 0.0529 |
3 | 3 | 0.0715 |
30 | 30 | 0.608 |
31 | 31 | 0.788 |
32 | 32 | 0.065 |
33 | 33 | 0.332 |
34 | 34 | 0.788 |
35 | 35 | 0.0922 |
36 | 36 | 0.0581 |
37 | 37 | 0.232 |
38 | 38 | 0.656 |
39 | 39 | 0.345 |
4 | 4 | 0.825 |
40 | 40 | 0.63 |
41 | 41 | 0.0364 |
42 | 42 | 0.0726 |
43 | 43 | 0.34 |
44 | 44 | 0.645 |
45 | 45 | 0.896 |
46 | 46 | 0.317 |
47 | 47 | 0.0964 |
48 | 48 | 0.254 |
49 | 49 | 0.265 |
5 | 5 | 0.103 |
50 | 50 | 0.522 |
51 | 51 | 0.579 |
52 | 52 | 0.204 |
53 | 53 | 0.312 |
54 | 54 | 0.638 |
55 | 55 | 0.435 |
56 | 56 | 0.729 |
57 | 57 | 0.857 |
58 | 58 | 0.0528 |
59 | 59 | 0.35 |
6 | 6 | 0.707 |
60 | 60 | 0.431 |
61 | 61 | 0.071 |
62 | 62 | 0.0347 |
63 | 63 | 0.938 |
64 | 64 | 0.285 |
65 | 65 | 0.89 |
66 | 66 | 0.909 |
67 | 67 | 0.886 |
68 | 68 | 0.698 |
69 | 69 | 0.694 |
7 | 7 | 0.179 |
70 | 70 | 0.0388 |
71 | 71 | 0.147 |
72 | 72 | 0.061 |
73 | 73 | 0.615 |
74 | 74 | 0.36 |
75 | 75 | 0.0252 |
76 | 76 | 0.279 |
77 | 77 | 0.436 |
78 | 78 | 0.389 |
79 | 79 | 0.511 |
8 | 8 | 0.682 |
80 | 80 | 6.56502e-4 |
81 | 81 | 0.46 |
82 | 82 | 0.187 |
83 | 83 | 0.836 |
84 | 84 | 0.758 |
85 | 85 | 0.669 |
86 | 86 | 0.14 |
87 | 87 | 0.377 |
88 | 88 | 0.652 |
89 | 89 | 0.727 |
9 | 9 | 0.378 |
90 | 90 | 0.0425 |
91 | 91 | 0.904 |
92 | 92 | 0.634 |
93 | 93 | 0.233 |
94 | 94 | 0.112 |
95 | 95 | 0.0115 |
96 | 96 | 0.187 |
97 | 97 | 0.53 |
98 | 98 | 0.171 |
99 | 99 | 0.0176 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12201
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)