FFCP PHASE1:Hg19::chr10:73581681..73581767,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:73581681..73581767,- to FFCP PHASE1:Hg19::chr10:73581681..73581767,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5660 | |EntrezGene=5660 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9498 | |HGNC=9498 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=34bp_to_uc001jsl.2_5end | |||
|cluster_id=chr10:73581681..73581767,- | |||
|coexpression_cluster_id=C143 | |||
|description=CAGE_peak_4_at_PSAP_5end | |||
|id=chr10:73581681..73581767,- | |||
|ontology_enrichment_celltype=CL:0000766!5.18e-29!76;CL:0002057!2.68e-26!42;CL:0002194!1.31e-25!63;CL:0000576!1.31e-25!63;CL:0000040!1.31e-25!63;CL:0000559!1.31e-25!63;CL:0000839!4.92e-24!70;CL:0002009!5.97e-24!65;CL:0000557!1.84e-23!71;CL:0000860!2.57e-23!45;CL:0000763!4.11e-10!112;CL:0000049!4.11e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.32e-21;33!CL:0002057;6.32e-21;33!CL:0000473;6.79e-21;39!CL:0000234;6.79e-21;39!CL:0000576;5.67e-17;48!CL:0000766;1.48e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.80e-32,72;CL:0000473,3.68e-31,48;CL:0000234,3.68e-31,48;CL:0002194,6.53e-29,59;CL:0000576,6.53e-29,59;CL:0000040,6.53e-29,59;CL:0000559,6.53e-29,59;CL:0000839,3.20e-27,66;CL:0000860,3.66e-27,42;CL:0002057,3.66e-27,42;CL:0002009,1.25e-26,61;CL:0000557,3.48e-26,67;CL:0000763,9.69e-12,108;CL:0000049,9.69e-12,108 | |||
|ontology_enrichment_development_v019=CL:0002057;3.98e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.88e-20!80;UBERON:0002390!2.80e-17!102;UBERON:0003061!2.80e-17!102;UBERON:0001474!3.38e-17!86;UBERON:0002193!1.28e-16!112;UBERON:0002405!4.99e-15!115;UBERON:0004765!1.49e-13!101;UBERON:0001434!1.49e-13!101;UBERON:0003081!2.52e-13!216;UBERON:0000468!7.09e-11!659;UBERON:0000467!5.39e-10!625;UBERON:0000480!9.86e-10!626;UBERON:0000062!1.10e-09!511;UBERON:0002050!2.85e-09!605;UBERON:0005423!2.85e-09!605;UBERON:0000923!2.93e-09!604;UBERON:0005291!2.93e-09!604;UBERON:0006598!2.93e-09!604;UBERON:0002532!2.93e-09!604;UBERON:0000922!4.30e-09!612;UBERON:0000926!2.91e-08!448;UBERON:0004120!2.91e-08!448;UBERON:0006603!2.91e-08!448;UBERON:0002204!6.67e-08!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.19e-22,76;UBERON:0002390,1.11e-19,98;UBERON:0003061,1.11e-19,98;UBERON:0001474,4.89e-19,82;UBERON:0002405,5.04e-19,93;UBERON:0002193,6.80e-19,108;UBERON:0004765,1.49e-17,90;UBERON:0000926,1.43e-15,315;UBERON:0004120,1.43e-15,315;UBERON:0006603,1.43e-15,315;UBERON:0001434,3.09e-15,100;UBERON:0003081,4.65e-15,203;UBERON:0000923,9.45e-11,560;UBERON:0010316,9.45e-11,560;UBERON:0005291,9.45e-11,560;UBERON:0006598,9.45e-11,560;UBERON:0010317,9.45e-11,560;UBERON:0002532,9.45e-11,560;UBERON:0002050,3.00e-10,564;UBERON:0005423,4.29e-09,581;UBERON:0000922,4.64e-09,592;UBERON:0002204,2.48e-08,167 | |||
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| ||
|short_description=p4@PSAP | |||
}} | }} |
Latest revision as of 04:02, 19 September 2015
Short description: | p4@PSAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PSAP_5end |
Coexpression cluster: | C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast |
Association with transcript: | 34bp_to_uc001jsl.2_5end |
EntrezGene: | PSAP |
HGNC: | 9498 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.80e-32 | 72 |
defensive cell | 3.68e-31 | 48 |
phagocyte | 3.68e-31 | 48 |
monopoietic cell | 6.53e-29 | 59 |
monocyte | 6.53e-29 | 59 |
monoblast | 6.53e-29 | 59 |
promonocyte | 6.53e-29 | 59 |
myeloid lineage restricted progenitor cell | 3.20e-27 | 66 |
classical monocyte | 3.66e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.66e-27 | 42 |
macrophage dendritic cell progenitor | 1.25e-26 | 61 |
granulocyte monocyte progenitor cell | 3.48e-26 | 67 |
myeloid cell | 9.69e-12 | 108 |
common myeloid progenitor | 9.69e-12 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.19e-22 | 76 |
hematopoietic system | 1.11e-19 | 98 |
blood island | 1.11e-19 | 98 |
bone element | 4.89e-19 | 82 |
immune system | 5.04e-19 | 93 |
hemolymphoid system | 6.80e-19 | 108 |
skeletal element | 1.49e-17 | 90 |
mesoderm | 1.43e-15 | 315 |
mesoderm-derived structure | 1.43e-15 | 315 |
presumptive mesoderm | 1.43e-15 | 315 |
skeletal system | 3.09e-15 | 100 |
lateral plate mesoderm | 4.65e-15 | 203 |
germ layer | 9.45e-11 | 560 |
germ layer / neural crest | 9.45e-11 | 560 |
embryonic tissue | 9.45e-11 | 560 |
presumptive structure | 9.45e-11 | 560 |
germ layer / neural crest derived structure | 9.45e-11 | 560 |
epiblast (generic) | 9.45e-11 | 560 |
embryonic structure | 3.00e-10 | 564 |
developing anatomical structure | 4.29e-09 | 581 |
embryo | 4.64e-09 | 592 |
musculoskeletal system | 2.48e-08 | 167 |