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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005494
|accession_numbers=CAGE;DRX008176;DRR009048;DRZ000473;DRZ001858
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005494
|accession_numbers=CAGE;DRX008176;DRR009048;DRZ000473;DRZ001858;DRZ011823;DRZ013208
|accession_numbers_RNASeq=sRNA-Seq;DRX037129;DRR041495;DRZ007137
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|microRNAs=
|microRNAs=
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|microRNAs_nn=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11225
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.TTAGGC.11225
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.TTAGGC.11225
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11225
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11225
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.TTAGGC.11225
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.TTAGGC.11225
|name=CD4+ T Cells, donor1
|name=CD4+ T Cells, donor1
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
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Line 80: Line 82:
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=PAX3,7:4.27376749486;FOXO1,3,4:3.57329905055;CREB1:3.40375886779;FOX{D1,D2}:3.33936645163;ATF4:3.17249672585;BPTF:3.06973216962;ATF5_CREB3:2.89674226251;RUNX1..3:2.79423052859;PITX1..3:2.70129129203;RFX2..5_RFXANK_RFXAP:2.52246214858;FOX{F1,F2,J1}:2.51981393367;FOXN1:2.49834628194;FOXP1:2.33318387029;CDX1,2,4:2.21803554574;ELF1,2,4:2.21118657184;DMAP1_NCOR{1,2}_SMARC:2.21103656783;ZBTB16:2.18096259982;RORA:2.13761589202;RFX1:1.89821617299;NKX6-1,2:1.83756541056;PAX4:1.81704307041;HMX1:1.81249355495;PAX2:1.8036186981;NFKB1_REL_RELA:1.74202420173;BREu{core}:1.71253729211;ETS1,2:1.70975291758;LEF1_TCF7_TCF7L1,2:1.62121780324;JUN:1.60122427962;IKZF2:1.57234728363;TGIF1:1.57060910515;FOX{I1,J2}:1.55383810968;ATF2:1.52191070654;PDX1:1.519047198;SPI1:1.35560781192;TOPORS:1.3218557876;NKX2-1,4:1.31135699926;IRF1,2:1.18037760723;SPIB:1.07680075537;GATA6:1.02258659165;HBP1_HMGB_SSRP1_UBTF:0.958505614433;AHR_ARNT_ARNT2:0.936332749297;T:0.907850754093;HIF1A:0.887015682263;PAX6:0.872064117079;TLX2:0.808026846304;CUX2:0.769109521166;NFATC1..3:0.747721657723;NFIL3:0.690381029629;HOX{A6,A7,B6,B7}:0.654558152095;SOX2:0.634529932148;ATF6:0.570974829933;ELK1,4_GABP{A,B1}:0.553786659092;EGR1..3:0.538789026004;ZEB1:0.527642491614;FOXA2:0.475141529606;AIRE:0.472658163154;MAFB:0.443954317671;PBX1:0.427985558147;SREBF1,2:0.425266348906;IRF7:0.41475810897;CRX:0.381735005222;HMGA1,2:0.375985762275;NKX3-1:0.357336954051;MYB:0.33790838644;SOX5:0.318644642577;TBX4,5:0.314823953866;SNAI1..3:0.311928825542;NFIX:0.294558079911;RREB1:0.265564258909;NANOG{mouse}:0.20218222661;STAT5{A,B}:0.148276335767;NKX2-2,8:0.139805844318;ZNF384:0.121591473764;NRF1:0.0990339668894;FOS_FOS{B,L1}_JUN{B,D}:0.0535433329556;YY1:0.0520267414185;FOSL2:0.0113069470236;EVI1:-0.0342040803268;EP300:-0.04478169847;E2F1..5:-0.0599242219436;STAT2,4,6:-0.0605628396852;NFY{A,B,C}:-0.105434164568;OCT4_SOX2{dimer}:-0.132992686394;DBP:-0.14393599208;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.156801947659;FOXP3:-0.156814606448;POU2F1..3:-0.191549477879;MYOD1:-0.216951033352;HOXA9_MEIS1:-0.228547140192;NR5A1,2:-0.240396459132;BACH2:-0.249941431006;NFE2L1:-0.259899031288;SMAD1..7,9:-0.274270416791;MYFfamily:-0.282251382418;HES1:-0.296744743936;ZFP161:-0.297133665996;VSX1,2:-0.302524854235;POU1F1:-0.324041000952;NFE2:-0.334227046364;MED-1{core}:-0.33684265638;STAT1,3:-0.343355823442;MZF1:-0.360200093853;LMO2:-0.36217854029;PRRX1,2:-0.371414057698;MTE{core}:-0.420429556588;FOXQ1:-0.425892991008;SRF:-0.433161368813;HLF:-0.442824436196;CEBPA,B_DDIT3:-0.444494671289;POU3F1..4:-0.445222572431;SPZ1:-0.450160791383;HNF4A_NR2F1,2:-0.478272946678;AR:-0.479388128286;NANOG:-0.505686947514;HNF1A:-0.507434918993;PPARG:-0.524489188211;GCM1,2:-0.564902359013;PATZ1:-0.575086661928;TFDP1:-0.605744707048;FOXM1:-0.613649619919;SOX17:-0.622018946582;ZNF143:-0.631662669645;NHLH1,2:-0.632037118597;PAX5:-0.649172544276;ALX4:-0.6723237626;SOX{8,9,10}:-0.704441747685;bHLH_family:-0.708152804916;TAL1_TCF{3,4,12}:-0.742366471593;GLI1..3:-0.748530073319;ALX1:-0.788408071208;FOXD3:-0.820462046768;GATA4:-0.830613070802;MEF2{A,B,C,D}:-0.847599791669;HOX{A5,B5}:-0.863690755514;MTF1:-0.871986481831;LHX3,4:-0.873016600889;RBPJ:-0.87700144953;NFE2L2:-0.899053492713;MAZ:-0.900603022547;FOXL1:-0.924233214022;RXRA_VDR{dimer}:-0.952215812222;MYBL2:-0.958894577516;ADNP_IRX_SIX_ZHX:-0.976953861888;ZBTB6:-0.984066060096;PAX8:-1.01214073724;TEF:-1.0170106973;GFI1:-1.04441546258;REST:-1.04825544233;SP1:-1.12785327255;HAND1,2:-1.15974374257;PRDM1:-1.16488079467;TFAP2B:-1.20537566273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25254132953;ZNF148:-1.26627156971;POU6F1:-1.30766403317;ZNF238:-1.3226407128;CDC5L:-1.32762815054;GFI1B:-1.35732748682;TP53:-1.3603918792;NR1H4:-1.39911058634;TBP:-1.41020958791;HIC1:-1.42837168547;GTF2A1,2:-1.47560003059;TFCP2:-1.48290080351;XCPE1{core}:-1.48508899271;ZIC1..3:-1.48560146306;UFEwm:-1.48975691924;POU5F1:-1.4930831633;ARID5B:-1.49458626892;ONECUT1,2:-1.51412779532;ZNF423:-1.5369242083;NKX2-3_NKX2-5:-1.55106337799;HSF1,2:-1.58778567201;TFAP4:-1.59850948855;GTF2I:-1.60144597391;TFAP2{A,C}:-1.61972855417;XBP1:-1.63441206139;NR6A1:-1.65324104167;EN1,2:-1.65928996628;TEAD1:-1.66905331135;TLX1..3_NFIC{dimer}:-1.67686538662;HOX{A4,D4}:-1.7554840268;KLF4:-1.81509263935;ESRRA:-1.83643036443;NR3C1:-2.06163015537;EBF1:-2.24441034995;GZF1:-2.28279954999;RXR{A,B,G}:-2.28849676601;NKX3-2:-2.34527933139;ESR1:-2.59610362318;IKZF1:-2.69673432008;PAX1,9:-2.79270781061
|top_motifs=PAX3,7:4.27376749486;FOXO1,3,4:3.57329905055;CREB1:3.40375886779;FOX{D1,D2}:3.33936645163;ATF4:3.17249672585;BPTF:3.06973216962;ATF5_CREB3:2.89674226251;RUNX1..3:2.79423052859;PITX1..3:2.70129129203;RFX2..5_RFXANK_RFXAP:2.52246214858;FOX{F1,F2,J1}:2.51981393367;FOXN1:2.49834628194;FOXP1:2.33318387029;CDX1,2,4:2.21803554574;ELF1,2,4:2.21118657184;DMAP1_NCOR{1,2}_SMARC:2.21103656783;ZBTB16:2.18096259982;RORA:2.13761589202;RFX1:1.89821617299;NKX6-1,2:1.83756541056;PAX4:1.81704307041;HMX1:1.81249355495;PAX2:1.8036186981;NFKB1_REL_RELA:1.74202420173;BREu{core}:1.71253729211;ETS1,2:1.70975291758;LEF1_TCF7_TCF7L1,2:1.62121780324;JUN:1.60122427962;IKZF2:1.57234728363;TGIF1:1.57060910515;FOX{I1,J2}:1.55383810968;ATF2:1.52191070654;PDX1:1.519047198;SPI1:1.35560781192;TOPORS:1.3218557876;NKX2-1,4:1.31135699926;IRF1,2:1.18037760723;SPIB:1.07680075537;GATA6:1.02258659165;HBP1_HMGB_SSRP1_UBTF:0.958505614433;AHR_ARNT_ARNT2:0.936332749297;T:0.907850754093;HIF1A:0.887015682263;PAX6:0.872064117079;TLX2:0.808026846304;CUX2:0.769109521166;NFATC1..3:0.747721657723;NFIL3:0.690381029629;HOX{A6,A7,B6,B7}:0.654558152095;SOX2:0.634529932148;ATF6:0.570974829933;ELK1,4_GABP{A,B1}:0.553786659092;EGR1..3:0.538789026004;ZEB1:0.527642491614;FOXA2:0.475141529606;AIRE:0.472658163154;MAFB:0.443954317671;PBX1:0.427985558147;SREBF1,2:0.425266348906;IRF7:0.41475810897;CRX:0.381735005222;HMGA1,2:0.375985762275;NKX3-1:0.357336954051;MYB:0.33790838644;SOX5:0.318644642577;TBX4,5:0.314823953866;SNAI1..3:0.311928825542;NFIX:0.294558079911;RREB1:0.265564258909;NANOG{mouse}:0.20218222661;STAT5{A,B}:0.148276335767;NKX2-2,8:0.139805844318;ZNF384:0.121591473764;NRF1:0.0990339668894;FOS_FOS{B,L1}_JUN{B,D}:0.0535433329556;YY1:0.0520267414185;FOSL2:0.0113069470236;EVI1:-0.0342040803268;EP300:-0.04478169847;E2F1..5:-0.0599242219436;STAT2,4,6:-0.0605628396852;NFY{A,B,C}:-0.105434164568;OCT4_SOX2{dimer}:-0.132992686394;DBP:-0.14393599208;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.156801947659;FOXP3:-0.156814606448;POU2F1..3:-0.191549477879;MYOD1:-0.216951033352;HOXA9_MEIS1:-0.228547140192;NR5A1,2:-0.240396459132;BACH2:-0.249941431006;NFE2L1:-0.259899031288;SMAD1..7,9:-0.274270416791;MYFfamily:-0.282251382418;HES1:-0.296744743936;ZFP161:-0.297133665996;VSX1,2:-0.302524854235;POU1F1:-0.324041000952;NFE2:-0.334227046364;MED-1{core}:-0.33684265638;STAT1,3:-0.343355823442;MZF1:-0.360200093853;LMO2:-0.36217854029;PRRX1,2:-0.371414057698;MTE{core}:-0.420429556588;FOXQ1:-0.425892991008;SRF:-0.433161368813;HLF:-0.442824436196;CEBPA,B_DDIT3:-0.444494671289;POU3F1..4:-0.445222572431;SPZ1:-0.450160791383;HNF4A_NR2F1,2:-0.478272946678;AR:-0.479388128286;NANOG:-0.505686947514;HNF1A:-0.507434918993;PPARG:-0.524489188211;GCM1,2:-0.564902359013;PATZ1:-0.575086661928;TFDP1:-0.605744707048;FOXM1:-0.613649619919;SOX17:-0.622018946582;ZNF143:-0.631662669645;NHLH1,2:-0.632037118597;PAX5:-0.649172544276;ALX4:-0.6723237626;SOX{8,9,10}:-0.704441747685;bHLH_family:-0.708152804916;TAL1_TCF{3,4,12}:-0.742366471593;GLI1..3:-0.748530073319;ALX1:-0.788408071208;FOXD3:-0.820462046768;GATA4:-0.830613070802;MEF2{A,B,C,D}:-0.847599791669;HOX{A5,B5}:-0.863690755514;MTF1:-0.871986481831;LHX3,4:-0.873016600889;RBPJ:-0.87700144953;NFE2L2:-0.899053492713;MAZ:-0.900603022547;FOXL1:-0.924233214022;RXRA_VDR{dimer}:-0.952215812222;MYBL2:-0.958894577516;ADNP_IRX_SIX_ZHX:-0.976953861888;ZBTB6:-0.984066060096;PAX8:-1.01214073724;TEF:-1.0170106973;GFI1:-1.04441546258;REST:-1.04825544233;SP1:-1.12785327255;HAND1,2:-1.15974374257;PRDM1:-1.16488079467;TFAP2B:-1.20537566273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25254132953;ZNF148:-1.26627156971;POU6F1:-1.30766403317;ZNF238:-1.3226407128;CDC5L:-1.32762815054;GFI1B:-1.35732748682;TP53:-1.3603918792;NR1H4:-1.39911058634;TBP:-1.41020958791;HIC1:-1.42837168547;GTF2A1,2:-1.47560003059;TFCP2:-1.48290080351;XCPE1{core}:-1.48508899271;ZIC1..3:-1.48560146306;UFEwm:-1.48975691924;POU5F1:-1.4930831633;ARID5B:-1.49458626892;ONECUT1,2:-1.51412779532;ZNF423:-1.5369242083;NKX2-3_NKX2-5:-1.55106337799;HSF1,2:-1.58778567201;TFAP4:-1.59850948855;GTF2I:-1.60144597391;TFAP2{A,C}:-1.61972855417;XBP1:-1.63441206139;NR6A1:-1.65324104167;EN1,2:-1.65928996628;TEAD1:-1.66905331135;TLX1..3_NFIC{dimer}:-1.67686538662;HOX{A4,D4}:-1.7554840268;KLF4:-1.81509263935;ESRRA:-1.83643036443;NR3C1:-2.06163015537;EBF1:-2.24441034995;GZF1:-2.28279954999;RXR{A,B,G}:-2.28849676601;NKX3-2:-2.34527933139;ESR1:-2.59610362318;IKZF1:-2.69673432008;PAX1,9:-2.79270781061
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11225-116C1;search_select_hide=table117:FF:11225-116C1
}}
}}

Latest revision as of 16:25, 3 June 2020

Name:CD4+ T Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10853
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage53 years old adult
sexmale
age53
cell typet cell, CD4+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberCD4T727
catalog number3H100-23-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005494
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10853 CAGE DRX008176 DRR009048
Accession ID Hg19

Library idBAMCTSS
CNhs10853 DRZ000473 DRZ001858
Accession ID Hg38

Library idBAMCTSS
CNhs10853 DRZ011823 DRZ013208
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005494
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.TTAGGC sRNA-Seq DRX037129 DRR041495
Accession ID Hg19

Library idBAMCTSS
SRhi10009.TTAGGC DRZ007137


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.339
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.139
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.232
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.632
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.693
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0417
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.443
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.526
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.765
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.667
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.078
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.71
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.101
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0148
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0201
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.472
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.71
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0352
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0719
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.638
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.144
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.00231
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.502
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.365
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.583
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.297
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0972
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.574
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0833
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.657
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.622
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.67
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.677
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.144
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.875
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.551
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.297
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.078
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.144
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10853

Jaspar motifP-value
MA0002.20.00226
MA0003.10.222
MA0004.10.945
MA0006.10.0677
MA0007.10.454
MA0009.10.0868
MA0014.10.961
MA0017.10.188
MA0018.24.65061e-9
MA0019.10.533
MA0024.10.869
MA0025.10.146
MA0027.10.933
MA0028.10.017
MA0029.10.404
MA0030.10.00766
MA0031.13.20978e-6
MA0035.20.209
MA0038.10.135
MA0039.20.584
MA0040.10.588
MA0041.10.279
MA0042.10.71
MA0043.17.59145e-4
MA0046.10.197
MA0047.20.139
MA0048.10.817
MA0050.19.26412e-6
MA0051.10.0182
MA0052.10.02
MA0055.10.957
MA0057.10.171
MA0058.10.924
MA0059.10.83
MA0060.10.366
MA0061.14.44245e-7
MA0062.26.78481e-11
MA0065.20.735
MA0066.10.601
MA0067.10.0114
MA0068.10.791
MA0069.10.86
MA0070.10.584
MA0071.10.72
MA0072.10.239
MA0073.10.905
MA0074.10.33
MA0076.10.00271
MA0077.10.0744
MA0078.10.931
MA0079.20.808
MA0080.22.57955e-9
MA0081.10.00984
MA0083.10.169
MA0084.10.257
MA0087.10.757
MA0088.10.76
MA0090.14.3739e-4
MA0091.10.164
MA0092.10.701
MA0093.10.979
MA0099.20.192
MA0100.10.631
MA0101.12.77728e-5
MA0102.20.968
MA0103.10.724
MA0104.20.278
MA0105.11.53562e-4
MA0106.10.0337
MA0107.16.3255e-5
MA0108.22.56528e-4
MA0111.10.439
MA0112.20.0595
MA0113.10.347
MA0114.10.221
MA0115.10.294
MA0116.10.233
MA0117.10.0371
MA0119.10.678
MA0122.10.879
MA0124.10.697
MA0125.10.0746
MA0131.10.064
MA0135.10.136
MA0136.14.08429e-16
MA0137.20.347
MA0138.20.0206
MA0139.10.762
MA0140.10.225
MA0141.10.0406
MA0142.10.122
MA0143.10.217
MA0144.10.44
MA0145.10.0164
MA0146.10.966
MA0147.10.336
MA0148.10.441
MA0149.10.817
MA0150.10.89
MA0152.10.0105
MA0153.10.211
MA0154.10.747
MA0155.10.166
MA0156.17.03042e-12
MA0157.16.82713e-5
MA0159.10.824
MA0160.10.406
MA0162.10.0745
MA0163.10.0533
MA0164.10.881
MA0258.10.514
MA0259.10.289



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10853

Novel motifP-value
10.847
100.0173
1000.857
1010.148
1020.874
1030.459
1040.956
1050.532
1060.718
1070.00919
1080.458
1090.929
110.699
1100.429
1110.754
1120.708
1130.282
1140.963
1150.227
1160.154
1170.00911
1180.616
1190.181
120.715
1200.359
1210.485
1220.946
1231.38178e-5
1240.818
1250.501
1260.862
1270.415
1280.536
1290.416
130.723
1300.292
1310.567
1320.281
1330.712
1340.946
1350.245
1360.925
1370.0264
1380.658
1390.168
140.674
1400.386
1410.727
1420.321
1430.0874
1440.815
1450.729
1460.537
1470.0193
1480.455
1490.194
150.456
1500.715
1510.641
1520.229
1530.444
1540.127
1550.0544
1560.904
1570.588
1580.00457
1590.96
160.219
1600.0936
1610.652
1620.0226
1630.794
1640.171
1650.965
1660.293
1670.136
1680.562
1690.1
170.582
180.494
190.0235
20.129
200.178
210.723
220.188
230.43
240.55
250.218
260.848
270.654
280.401
290.161
30.445
300.039
310.462
320.00196
330.555
340.24
350.242
360.119
370.789
380.652
390.27
40.933
400.417
410.201
420.184
430.813
440.548
450.136
460.918
470.538
480.938
490.176
50.715
500.483
510.827
520.586
530.234
540.833
550.909
560.761
570.785
580.248
590.153
60.973
600.814
610.218
620.379
630.802
640.993
650.396
660.782
670.47
680.574
690.496
70.721
700.169
710.356
720.586
730.452
740.969
750.0929
760.073
770.00437
780.765
790.959
80.311
800.0727
810.979
820.604
830.771
840.19
850.539
860.208
870.291
880.964
890.00312
90.564
900.121
910.785
920.996
930.871
940.466
950.629
960.884
970.348
980.471
992.77473e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10853


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000031 (CD4-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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