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{{f5samples
{{f5samples
|DRA_sample_Accession=sRNA-Seq@SAMD00013686
|DRA_sample_Accession=CAGE@SAMD00005373
|accession_numbers=CAGE;DRX008195;DRR009067;DRZ000492;DRZ001877!sRNA-Seq;DRX012363;DRR013811;DRZ003012;
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013686
|accession_numbers=CAGE;DRX008195;DRR009067;DRZ000492;DRZ001877;DRZ011842;DRZ013227
|accession_numbers_RNASeq=sRNA-Seq;DRX012363;DRR013811;DRZ003012
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
Line 50: Line 52:
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs10854
|library_id=CNhs10854!SRhi10010.TTAGGC
|library_id_phase_based=2:CNhs10854
|library_id_phase_based=2:CNhs10854
|microRNAs=
|microRNAs=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 80: Line 82:
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=RORA:4.40643880323;PAX3,7:4.10006642284;CREB1:3.59266383175;ATF4:3.49165621849;ATF5_CREB3:3.31829025795;RFX2..5_RFXANK_RFXAP:3.26207926989;RUNX1..3:3.2343750784;FOXO1,3,4:3.04924425332;FOX{D1,D2}:2.92538871625;FOXN1:2.85675310843;ELF1,2,4:2.64904710519;FOX{F1,F2,J1}:2.63598340109;BPTF:2.4754705531;T:2.44518272175;RFX1:2.38439464359;NFKB1_REL_RELA:2.27292644584;DMAP1_NCOR{1,2}_SMARC:2.1501130154;PITX1..3:2.14197759243;ETS1,2:2.10454812661;PAX2:2.0968287398;TBX4,5:2.0908599006;JUN:1.99962778634;HMX1:1.89546662281;TGIF1:1.80250631952;FOXP1:1.74085143054;SPI1:1.60266257228;ATF2:1.47456877986;ATF6:1.44132204818;LEF1_TCF7_TCF7L1,2:1.41981657358;HIF1A:1.31751301886;IRF1,2:1.30754387281;TLX2:1.2990406982;BREu{core}:1.23507152576;NKX2-1,4:1.19550165057;CDX1,2,4:1.17632743801;SPIB:1.15669055422;ZBTB16:1.12438208172;IKZF2:1.05747912754;PAX6:1.04488671771;FOX{I1,J2}:0.996354290082;ELK1,4_GABP{A,B1}:0.904436492712;PAX4:0.835992372998;GATA6:0.825340005708;PPARG:0.77881498675;NKX6-1,2:0.775606502006;NANOG{mouse}:0.613125234483;ZNF384:0.602266957949;EP300:0.580606328728;NFATC1..3:0.574730227209;MYB:0.552104810246;EGR1..3:0.550306040939;FOSL2:0.546632251782;SOX2:0.480332531686;HBP1_HMGB_SSRP1_UBTF:0.46633841802;MAFB:0.437430721428;IRF7:0.422464070285;HOX{A6,A7,B6,B7}:0.3292432712;TFDP1:0.298795549204;RREB1:0.276388415184;SMAD1..7,9:0.256607040191;FOS_FOS{B,L1}_JUN{B,D}:0.249299263637;SREBF1,2:0.223670819177;NFIX:0.20392934323;HMGA1,2:0.129210436867;NFY{A,B,C}:0.0638106026285;PDX1:0.0597262563478;NFIL3:0.0588969352109;BACH2:0.0335258926751;ZEB1:0.0247541657884;MYFfamily:-0.0183699640965;NFE2L1:-0.0441836939011;AHR_ARNT_ARNT2:-0.0525890636833;CUX2:-0.0528015395477;SNAI1..3:-0.0651736069769;STAT2,4,6:-0.0792981893187;FOXA2:-0.105411446845;SOX5:-0.118712089487;TOPORS:-0.119423915518;NFE2:-0.146574422336;NKX3-1:-0.173915293274;AIRE:-0.178876926028;FOXP3:-0.178962643053;TAL1_TCF{3,4,12}:-0.187074315645;CRX:-0.187842952767;MTE{core}:-0.201079416296;NRF1:-0.248079557233;PRRX1,2:-0.258762674316;POU2F1..3:-0.281604308786;MED-1{core}:-0.295698657875;NANOG:-0.309148171848;NR5A1,2:-0.311759732007;PBX1:-0.353705939486;STAT5{A,B}:-0.364391427322;E2F1..5:-0.374663941742;CEBPA,B_DDIT3:-0.378178933837;EVI1:-0.378221761157;FOXL1:-0.39002092737;AR:-0.396527174725;MYOD1:-0.410802810158;HLF:-0.422329202491;NFE2L2:-0.424407172678;GCM1,2:-0.432837541501;YY1:-0.453822103751;RXRA_VDR{dimer}:-0.45940105263;ZFP161:-0.470660085674;PAX5:-0.4745519662;FOXQ1:-0.484169442246;TFAP4:-0.488477863286;MTF1:-0.489617435184;SRF:-0.545197761712;HES1:-0.550797102322;TFAP2B:-0.552669417511;NHLH1,2:-0.563672909606;LMO2:-0.569760460712;GLI1..3:-0.620120671108;HNF1A:-0.643925344766;bHLH_family:-0.646895753239;HNF4A_NR2F1,2:-0.691178235511;XBP1:-0.696925839933;ALX4:-0.713804966394;STAT1,3:-0.720417762312;RBPJ:-0.724254377751;ZBTB6:-0.73213981687;FOXD3:-0.733157340239;PATZ1:-0.751191086236;HOXA9_MEIS1:-0.758866802;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.760097648724;MZF1:-0.764149546016;SPZ1:-0.786017939671;MAZ:-0.794866428704;ZNF148:-0.803516143169;NKX2-2,8:-0.812156823675;ZNF143:-0.838486438955;DBP:-0.854778641283;REST:-0.905132442149;ZNF423:-0.910697712511;FOXM1:-0.917733744615;ZIC1..3:-0.918948137609;VSX1,2:-0.921329762143;HSF1,2:-0.925237097507;SOX{8,9,10}:-0.954051078553;OCT4_SOX2{dimer}:-0.974742861286;SOX17:-0.987104174615;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.998295020036;HAND1,2:-1.06145128232;GFI1:-1.07193549135;POU1F1:-1.08522036868;MEF2{A,B,C,D}:-1.09991761256;HIC1:-1.11155000824;TFAP2{A,C}:-1.13875886353;SP1:-1.17060416333;ALX1:-1.19876491567;ZNF238:-1.23010887498;LHX3,4:-1.23947816499;POU6F1:-1.24979204411;GATA4:-1.29660511963;TFCP2:-1.30440419833;NR1H4:-1.36456303545;ARID5B:-1.40032101548;MYBL2:-1.41175490315;TBP:-1.4286251916;TP53:-1.4671186094;RXR{A,B,G}:-1.47332441016;POU5F1:-1.47686002173;UFEwm:-1.52400777129;CDC5L:-1.54615323175;XCPE1{core}:-1.58323153571;TEF:-1.59647433466;NKX2-3_NKX2-5:-1.65299420261;HOX{A5,B5}:-1.66301440093;GTF2I:-1.66890364307;GTF2A1,2:-1.67546367699;ESRRA:-1.68740163636;GFI1B:-1.73433725861;TEAD1:-1.79340222042;TLX1..3_NFIC{dimer}:-1.82132086224;ADNP_IRX_SIX_ZHX:-1.89015706268;POU3F1..4:-1.91695830848;PAX8:-1.9490270473;EN1,2:-2.00047072706;PRDM1:-2.04231831714;HOX{A4,D4}:-2.08460468431;GZF1:-2.09584265112;ONECUT1,2:-2.16501279144;NR6A1:-2.18857802588;EBF1:-2.35065207729;ESR1:-2.37072897289;KLF4:-2.38087518037;NKX3-2:-2.52752922159;IKZF1:-2.65005295601;PAX1,9:-2.66811734421;NR3C1:-3.19153879684
|top_motifs=RORA:4.40643880323;PAX3,7:4.10006642284;CREB1:3.59266383175;ATF4:3.49165621849;ATF5_CREB3:3.31829025795;RFX2..5_RFXANK_RFXAP:3.26207926989;RUNX1..3:3.2343750784;FOXO1,3,4:3.04924425332;FOX{D1,D2}:2.92538871625;FOXN1:2.85675310843;ELF1,2,4:2.64904710519;FOX{F1,F2,J1}:2.63598340109;BPTF:2.4754705531;T:2.44518272175;RFX1:2.38439464359;NFKB1_REL_RELA:2.27292644584;DMAP1_NCOR{1,2}_SMARC:2.1501130154;PITX1..3:2.14197759243;ETS1,2:2.10454812661;PAX2:2.0968287398;TBX4,5:2.0908599006;JUN:1.99962778634;HMX1:1.89546662281;TGIF1:1.80250631952;FOXP1:1.74085143054;SPI1:1.60266257228;ATF2:1.47456877986;ATF6:1.44132204818;LEF1_TCF7_TCF7L1,2:1.41981657358;HIF1A:1.31751301886;IRF1,2:1.30754387281;TLX2:1.2990406982;BREu{core}:1.23507152576;NKX2-1,4:1.19550165057;CDX1,2,4:1.17632743801;SPIB:1.15669055422;ZBTB16:1.12438208172;IKZF2:1.05747912754;PAX6:1.04488671771;FOX{I1,J2}:0.996354290082;ELK1,4_GABP{A,B1}:0.904436492712;PAX4:0.835992372998;GATA6:0.825340005708;PPARG:0.77881498675;NKX6-1,2:0.775606502006;NANOG{mouse}:0.613125234483;ZNF384:0.602266957949;EP300:0.580606328728;NFATC1..3:0.574730227209;MYB:0.552104810246;EGR1..3:0.550306040939;FOSL2:0.546632251782;SOX2:0.480332531686;HBP1_HMGB_SSRP1_UBTF:0.46633841802;MAFB:0.437430721428;IRF7:0.422464070285;HOX{A6,A7,B6,B7}:0.3292432712;TFDP1:0.298795549204;RREB1:0.276388415184;SMAD1..7,9:0.256607040191;FOS_FOS{B,L1}_JUN{B,D}:0.249299263637;SREBF1,2:0.223670819177;NFIX:0.20392934323;HMGA1,2:0.129210436867;NFY{A,B,C}:0.0638106026285;PDX1:0.0597262563478;NFIL3:0.0588969352109;BACH2:0.0335258926751;ZEB1:0.0247541657884;MYFfamily:-0.0183699640965;NFE2L1:-0.0441836939011;AHR_ARNT_ARNT2:-0.0525890636833;CUX2:-0.0528015395477;SNAI1..3:-0.0651736069769;STAT2,4,6:-0.0792981893187;FOXA2:-0.105411446845;SOX5:-0.118712089487;TOPORS:-0.119423915518;NFE2:-0.146574422336;NKX3-1:-0.173915293274;AIRE:-0.178876926028;FOXP3:-0.178962643053;TAL1_TCF{3,4,12}:-0.187074315645;CRX:-0.187842952767;MTE{core}:-0.201079416296;NRF1:-0.248079557233;PRRX1,2:-0.258762674316;POU2F1..3:-0.281604308786;MED-1{core}:-0.295698657875;NANOG:-0.309148171848;NR5A1,2:-0.311759732007;PBX1:-0.353705939486;STAT5{A,B}:-0.364391427322;E2F1..5:-0.374663941742;CEBPA,B_DDIT3:-0.378178933837;EVI1:-0.378221761157;FOXL1:-0.39002092737;AR:-0.396527174725;MYOD1:-0.410802810158;HLF:-0.422329202491;NFE2L2:-0.424407172678;GCM1,2:-0.432837541501;YY1:-0.453822103751;RXRA_VDR{dimer}:-0.45940105263;ZFP161:-0.470660085674;PAX5:-0.4745519662;FOXQ1:-0.484169442246;TFAP4:-0.488477863286;MTF1:-0.489617435184;SRF:-0.545197761712;HES1:-0.550797102322;TFAP2B:-0.552669417511;NHLH1,2:-0.563672909606;LMO2:-0.569760460712;GLI1..3:-0.620120671108;HNF1A:-0.643925344766;bHLH_family:-0.646895753239;HNF4A_NR2F1,2:-0.691178235511;XBP1:-0.696925839933;ALX4:-0.713804966394;STAT1,3:-0.720417762312;RBPJ:-0.724254377751;ZBTB6:-0.73213981687;FOXD3:-0.733157340239;PATZ1:-0.751191086236;HOXA9_MEIS1:-0.758866802;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.760097648724;MZF1:-0.764149546016;SPZ1:-0.786017939671;MAZ:-0.794866428704;ZNF148:-0.803516143169;NKX2-2,8:-0.812156823675;ZNF143:-0.838486438955;DBP:-0.854778641283;REST:-0.905132442149;ZNF423:-0.910697712511;FOXM1:-0.917733744615;ZIC1..3:-0.918948137609;VSX1,2:-0.921329762143;HSF1,2:-0.925237097507;SOX{8,9,10}:-0.954051078553;OCT4_SOX2{dimer}:-0.974742861286;SOX17:-0.987104174615;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.998295020036;HAND1,2:-1.06145128232;GFI1:-1.07193549135;POU1F1:-1.08522036868;MEF2{A,B,C,D}:-1.09991761256;HIC1:-1.11155000824;TFAP2{A,C}:-1.13875886353;SP1:-1.17060416333;ALX1:-1.19876491567;ZNF238:-1.23010887498;LHX3,4:-1.23947816499;POU6F1:-1.24979204411;GATA4:-1.29660511963;TFCP2:-1.30440419833;NR1H4:-1.36456303545;ARID5B:-1.40032101548;MYBL2:-1.41175490315;TBP:-1.4286251916;TP53:-1.4671186094;RXR{A,B,G}:-1.47332441016;POU5F1:-1.47686002173;UFEwm:-1.52400777129;CDC5L:-1.54615323175;XCPE1{core}:-1.58323153571;TEF:-1.59647433466;NKX2-3_NKX2-5:-1.65299420261;HOX{A5,B5}:-1.66301440093;GTF2I:-1.66890364307;GTF2A1,2:-1.67546367699;ESRRA:-1.68740163636;GFI1B:-1.73433725861;TEAD1:-1.79340222042;TLX1..3_NFIC{dimer}:-1.82132086224;ADNP_IRX_SIX_ZHX:-1.89015706268;POU3F1..4:-1.91695830848;PAX8:-1.9490270473;EN1,2:-2.00047072706;PRDM1:-2.04231831714;HOX{A4,D4}:-2.08460468431;GZF1:-2.09584265112;ONECUT1,2:-2.16501279144;NR6A1:-2.18857802588;EBF1:-2.35065207729;ESR1:-2.37072897289;KLF4:-2.38087518037;NKX3-2:-2.52752922159;IKZF1:-2.65005295601;PAX1,9:-2.66811734421;NR3C1:-3.19153879684
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11226-116C2;search_select_hide=table117:FF:11226-116C2
}}
}}

Latest revision as of 16:25, 3 June 2020

Name:CD8+ T Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10854,SRhi10010.TTAGGC
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage47 years old adult
sexmale
age47
cell typet cell, CD8+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberCD8T725
catalog number3H100-26-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005373
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10854 CAGE DRX008195 DRR009067
Accession ID Hg19

Library idBAMCTSS
CNhs10854 DRZ000492 DRZ001877
Accession ID Hg38

Library idBAMCTSS
CNhs10854 DRZ011842 DRZ013227
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00013686
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.TTAGGC sRNA-Seq DRX012363 DRR013811
Accession ID Hg19

Library idBAMCTSS
SRhi10010.TTAGGC DRZ003012


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.257
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.118
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.261
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.626
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.812
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0798
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.449
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.781
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.0798
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.837
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.588
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0798
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.605
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.117
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0798
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0798
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0858
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.783
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.809
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.147
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.534
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.344
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.00714
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.454
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.615
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.751
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.449
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0793
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.534
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.257
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.835
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.543
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.723
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.743
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.147
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.895
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.795
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.719
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0798
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.751
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10854

Jaspar motifP-value
MA0002.24.78047e-5
MA0003.10.369
MA0004.10.896
MA0006.10.213
MA0007.10.216
MA0009.10.0143
MA0014.10.721
MA0017.10.0621
MA0018.24.7314e-11
MA0019.10.688
MA0024.10.746
MA0025.10.0505
MA0027.10.718
MA0028.10.0019
MA0029.10.939
MA0030.18.66694e-4
MA0031.13.75933e-6
MA0035.20.194
MA0038.10.114
MA0039.20.387
MA0040.10.799
MA0041.10.242
MA0042.10.655
MA0043.13.67435e-5
MA0046.10.0986
MA0047.20.264
MA0048.10.866
MA0050.13.65412e-8
MA0051.10.00216
MA0052.10.0218
MA0055.10.736
MA0057.10.165
MA0058.10.935
MA0059.10.65
MA0060.10.52
MA0061.13.59376e-10
MA0062.25.25739e-15
MA0065.20.507
MA0066.10.755
MA0067.10.00137
MA0068.10.872
MA0069.10.98
MA0070.10.521
MA0071.10.948
MA0072.10.00236
MA0073.10.516
MA0074.10.554
MA0076.14.02483e-4
MA0077.10.162
MA0078.10.995
MA0079.20.975
MA0080.22.47901e-10
MA0081.10.00642
MA0083.10.266
MA0084.10.2
MA0087.10.604
MA0088.10.307
MA0090.11.34006e-4
MA0091.10.251
MA0092.10.757
MA0093.10.822
MA0099.20.991
MA0100.10.625
MA0101.14.79375e-7
MA0102.20.422
MA0103.10.69
MA0104.20.547
MA0105.19.23314e-7
MA0106.10.0276
MA0107.15.04468e-7
MA0108.28.84494e-4
MA0111.10.58
MA0112.20.0514
MA0113.10.307
MA0114.10.114
MA0115.10.147
MA0116.10.367
MA0117.10.00611
MA0119.10.188
MA0122.10.997
MA0124.10.177
MA0125.10.115
MA0131.10.051
MA0135.10.182
MA0136.11.83799e-18
MA0137.20.28
MA0138.20.0146
MA0139.10.645
MA0140.10.339
MA0141.10.0462
MA0142.10.184
MA0143.10.155
MA0144.10.405
MA0145.10.0201
MA0146.10.863
MA0147.10.54
MA0148.10.471
MA0149.10.833
MA0150.10.315
MA0152.10.00269
MA0153.10.109
MA0154.10.699
MA0155.10.135
MA0156.18.40116e-14
MA0157.16.82279e-4
MA0159.10.905
MA0160.10.524
MA0162.10.195
MA0163.10.0508
MA0164.10.848
MA0258.10.354
MA0259.10.623



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10854

Novel motifP-value
10.817
100.0236
1000.931
1010.445
1020.945
1030.328
1040.839
1050.606
1060.377
1070.0142
1080.432
1090.978
110.984
1100.188
1110.715
1120.726
1130.314
1140.868
1150.284
1160.112
1170.0162
1180.644
1190.197
120.57
1200.262
1210.681
1220.866
1238.73851e-4
1240.788
1250.432
1260.826
1270.658
1280.765
1290.171
130.625
1300.317
1310.219
1320.137
1330.943
1340.662
1350.344
1360.933
1370.0643
1380.727
1390.197
140.575
1400.946
1410.687
1420.356
1430.0188
1440.864
1450.462
1460.467
1470.0165
1480.474
1490.108
150.456
1500.975
1510.701
1520.725
1530.539
1540.182
1550.0613
1560.999
1570.571
1580.00776
1590.764
160.172
1600.0144
1610.73
1620.00913
1630.879
1640.17
1650.811
1660.276
1670.172
1680.578
1690.0833
170.507
180.599
190.0163
20.147
200.152
210.711
220.162
230.528
240.557
250.217
260.651
270.497
280.361
290.11
30.828
300.0643
310.534
320.00255
330.411
340.311
350.486
360.137
370.52
380.496
390.38
40.634
400.772
410.13
420.437
430.818
440.596
450.127
460.773
470.875
480.802
490.382
50.725
500.476
510.843
520.774
530.381
540.84
550.524
560.716
570.683
580.244
590.144
60.852
600.738
610.289
620.437
630.649
640.86
650.334
660.68
670.397
680.716
690.732
70.837
700.398
710.468
720.46
730.716
740.764
750.0859
760.179
770.00134
780.93
790.95
80.197
800.0248
810.755
820.849
830.769
840.204
850.89
860.0743
870.993
880.894
890.00213
90.733
900.936
910.918
920.695
930.983
940.392
950.28
960.866
970.311
980.775
991.38602e-6



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10854


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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