FFCP PHASE1:Hg19::chr13:37494306..37494324,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:37494306..37494324,- to FFCP PHASE1:Hg19::chr13:37494306..37494324,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4093 | |EntrezGene=4093 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6774 | |HGNC=6774 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=50bp_to_ENST00000350148_5end | |||
|cluster_id=chr13:37494306..37494324,- | |||
|coexpression_cluster_id=C3369 | |||
|description=CAGE_peak_4_at_SMAD9_5end | |||
|id=chr13:37494306..37494324,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!2.13e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:171;6.04e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,6.85e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.02e-24!115;UBERON:0000073!3.32e-21!94;UBERON:0001016!3.32e-21!94;UBERON:0002346!7.28e-21!90;UBERON:0005743!1.00e-18!86;UBERON:0003075!2.41e-18!86;UBERON:0007284!2.41e-18!86;UBERON:0001017!6.48e-17!82;UBERON:0001049!1.76e-16!57;UBERON:0005068!1.76e-16!57;UBERON:0006241!1.76e-16!57;UBERON:0007135!1.76e-16!57;UBERON:0000955!1.81e-14!69;UBERON:0006238!1.81e-14!69;UBERON:0000924!8.35e-14!173;UBERON:0006601!8.35e-14!173;UBERON:0000153!1.30e-12!129;UBERON:0007811!1.30e-12!129;UBERON:0002616!1.51e-12!59;UBERON:0000033!1.73e-12!123;UBERON:0000475!1.94e-12!365;UBERON:0004121!4.68e-12!169;UBERON:0003056!1.40e-11!61;UBERON:0002780!4.47e-11!41;UBERON:0001890!4.47e-11!41;UBERON:0006240!4.47e-11!41;UBERON:0000468!1.23e-10!659;UBERON:0003080!1.73e-10!42;UBERON:0000481!2.04e-10!347;UBERON:0000483!5.91e-10!309;UBERON:0000119!1.23e-09!312;UBERON:0000477!4.68e-09!286;UBERON:0002020!7.91e-09!34;UBERON:0003528!7.91e-09!34;UBERON:0001893!8.40e-09!34;UBERON:0002791!1.25e-08!33;UBERON:0004111!2.26e-08!241;UBERON:0000025!5.51e-08!194;UBERON:0001869!8.41e-08!32;UBERON:0000922!1.10e-07!612;UBERON:0003076!1.12e-07!15;UBERON:0003057!1.12e-07!15;UBERON:0002050!2.91e-07!605;UBERON:0005423!2.91e-07!605;UBERON:0000923!5.30e-07!604;UBERON:0005291!5.30e-07!604;UBERON:0006598!5.30e-07!604;UBERON:0002532!5.30e-07!604;UBERON:0000956!9.77e-07!25;UBERON:0000203!9.77e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;7.53e-09;9!UBERON:0000042;7.53e-09;9!UBERON:0002050;2.89e-08;5!UBERON:0005423;2.89e-08;5!UBERON:0002298;9.35e-08;6!UBERON:0002346;2.02e-07;4!UBERON:0000923;2.02e-07;4!UBERON:0010316;2.02e-07;4!UBERON:0005291;2.02e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.17e-17,114;UBERON:0002346,9.21e-15,86;UBERON:0001016,4.25e-12,89;UBERON:0003075,1.36e-11,82;UBERON:0007284,1.36e-11,82;UBERON:0001017,1.05e-09,81;UBERON:0001049,1.10e-09,56;UBERON:0005068,1.10e-09,56;UBERON:0006241,1.10e-09,56;UBERON:0007135,1.10e-09,56;UBERON:0003076,1.02e-08,15;UBERON:0003057,1.02e-08,15;UBERON:0010314,1.43e-08,132;UBERON:0004121,3.25e-08,171;UBERON:0000924,3.25e-08,171;UBERON:0006601,3.25e-08,171;UBERON:0010371,8.56e-08,104;UBERON:0000073,1.24e-07,53;UBERON:0002616,1.24e-07,53;UBERON:0002298,2.40e-07,6 | |||
|phase1_expression=2.54349730978779,1.07050261945492,3.10099689011137,0,1.78784437770915,0.872338524100369,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0.602694528023977,0,0,0.984968464614303,0.408001382488506,0.313454721478088,0.85870796139317,0.684372125364421,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0.722878304769133,2.00535164254356,3.0417768981773,0.795285947051099,0.486634870302636,0.189069634328136,0.886917589850256,0.263504357079378,1.11332214173056,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0.402829317109147,0.760272105718513,0,0.367663080345869,0,0.803697554556718,0.898117490504679,0.788280363383256,0,0,0.183201743930407,0,0,0,0,0.759783069987479,0,1.14734648299525,0.354668382198357,0,0,0,1.24484414159907,0.538842688278752,1.47115712802113,0,0,0,0,0,0,0.352303495931295,0,0.140450806702248,0,0,0.206651562351531,1.18800285728205,0.494533858557114,0,0,0,0.125118519871964,0,0.877955241761676,0.612975591598039,0,0.113432183160021,0.358779271377724,0.640672166455702,0,2.70081986475962,0.103052529238439,0.257640540045629,0,1.85653965465393,1.07180705677318,1.26216887122057,0.368199594569197,0.161646056818812,1.06502877754984,1.10827308050404,1.18692414617341,0,0,0,0,0,0.232387885739037,0.725627385107593,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0.8231480226628,0,0,0,1.18157981336281,0,0.122988438543114,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,1.44331342025273,0.579652024875384,0.587043471179108,0.721832238805369,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.176096868026452,0,0,0,0.190493682876507,0,0,0,0,0,0,0.112131084345361,0,0,0.129271715757778,0,0,0,0,0.514414748524284,0,1.5985330740966,1.00084595560703,0.542621605391443,1.64648067356154,0,0.710783897485092,0,1.20575750823834,0,0.899756920638513,0,0,0,0.239624855491583,1.14861935834114,0,0.868687840005475,1.64381058040307,0.716243852959582,0,0,0,0,3.30323011489202,2.60279707715243,1.54657762555539,0.502548796003046,1.91381625495949,0,0,0,0.981531933753119,0,0,0,0.178428988797162,0,0,0,0,1.03473071292505,0.664225598535437,0.368738337083406,0,0,0,0,0,0,0,0,0,1.48864684691266,1.2276957863045,2.80660094433074,1.40953064181271,2.04682899626681,1.28683136914886,4.45254199334973,0,0.355123450626254,0.0821271560138091,0,0.464841513839837,0,0.200506470303285,0.276242966807689,0.229628896329213,0.182091168006717,0.655622074797121,0,0.0770153371044148,0,0,0,0,0.510281115829547,0.647747748306418,0,0,0,0.254876273045038,0,0,0,0,1.28225062558195,1.31205858279882,0.976135183992909,0.515205058238611,1.00726411300178,0.907604499126468,0,0,0,0.193341436584244,1.23238893691716,0.15350367472613,0.137836572484531,0.107420244868274,0.725083469571143,0.0852266274161009,0.445160178233687,0.165284915360978,0,0,0,2.78907329578371,2.20368642781448,0,0.308033580176089,0.532306030317022,0,0,0.429374660225974,0.372158369359667,0,0,0,0,0,0.78494864019923,0,0.54907405947211,0.235624804691373,0.202182481573316,0,0,1.46290121726877,0.974853958525138,0,0.409499734223957,0.848432591722276,1.13008116620243,1.10273068709225,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0.0982490410131212,0,0.354761064070598,1.26664581178598,1.97576935775941,0.75894634753143,0.349934720244983,0.0962221127255121,0,0,1.31801321087491,0,0,0.443430153536676,0,0.507447609232169,0,0,0,0,0,0,0,1.92283328029452,0,0.490080431962063,0.185803175125719,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0.36408156524854,0,0,0,0,0,0,0.984685914873589,0.222617410045812,0,0.63337622438398,3.78571177677032,1.38141957765574,3.02319297425131,0.409074730008619,0,0,0,0,0.511572370226872,1.28236427328014,0,0,0.969332746095218,0.834912883456661,0,0,0,0,0.227586896570999,0,0,4.13692047889758,2.04123229368278,1.90987494426621,0.885741385813839,0.723578631752448,1.52581736317083,1.43753037910592,0.295547618953547,0,1.19832309870889,0.697118721393016,1.30815439456455,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,1.08194319871046,0.995261931078505,0.973033209536731,1.22206028986725,0.296521128680622,0.494255755786011,0.417687798021821,2.56124305326573,0.802577647298789,1.87411556580271,0.364909578431332,0,0.242780379534093,1.18375320854817,2.41981432097328,0.91821828489147,5.49723242767845,0.60129367765797,0.207376382794494,0,0,0.313932918407225,0,0,0.138674673013139,0,0,0.0870592065804026,1.57254001417827,0,0,0,0,1.64881328030313,0,1.58186518546373,0.137041924646751,0.397429223405979,1.01297273529406,0,0,1.70762395791482,0,0,1.83258553865465,0.171594997861965,0,0.621262677827163,0.942776138467182,0.271808412147228,0.104602846312333,0.713987523454252,0.866851769704557,0,1.36905378891993,0,0.859530882839914,0,1.95497680890578,2.29160424011684,1.43574604915363,0.1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| ||
|short_description=p4@SMAD9 | |||
}} | }} |
Latest revision as of 06:19, 17 September 2015
Short description: | p4@SMAD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SMAD9_5end |
Coexpression cluster: | C3369_peripheral_thyroid_medulloblastoma_argyrophil_neuroblastoma_Adipocyte_neuroectodermal |
Association with transcript: | 50bp_to_ENST00000350148_5end |
EntrezGene: | SMAD9 |
HGNC: | 6774 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.17e-17 | 114 |
neurectoderm | 9.21e-15 | 86 |
nervous system | 4.25e-12 | 89 |
neural plate | 1.36e-11 | 82 |
presumptive neural plate | 1.36e-11 | 82 |
central nervous system | 1.05e-09 | 81 |
neural tube | 1.10e-09 | 56 |
neural rod | 1.10e-09 | 56 |
future spinal cord | 1.10e-09 | 56 |
neural keel | 1.10e-09 | 56 |
posterior neural tube | 1.02e-08 | 15 |
chordal neural plate | 1.02e-08 | 15 |
structure with developmental contribution from neural crest | 1.43e-08 | 132 |
ectoderm-derived structure | 3.25e-08 | 171 |
ectoderm | 3.25e-08 | 171 |
presumptive ectoderm | 3.25e-08 | 171 |
ecto-epithelium | 8.56e-08 | 104 |
regional part of nervous system | 1.24e-07 | 53 |
regional part of brain | 1.24e-07 | 53 |
brainstem | 2.40e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.85e-10 | 10 |