FFCP PHASE1:Hg19::chr14:74959995..74960020,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:74959995..74960020,- to FFCP PHASE1:Hg19::chr14:74959995..74960020,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10577 | |EntrezGene=10577 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14537 | |HGNC=14537 | ||
|TSSclassifier=strong | |||
|UniProt=E7EMS2 | |UniProt=E7EMS2 | ||
|association_with_transcript=0bp_to_ENST00000434013_5end | |||
|cluster_id=chr14:74959995..74960020,- | |||
|description=CAGE_peak_1_at_NPC2_5end | |||
|id=chr14:74959995..74960020,- | |||
|ontology_enrichment_celltype=CL:0002194!2.31e-24!63;CL:0000576!2.31e-24!63;CL:0000040!2.31e-24!63;CL:0000559!2.31e-24!63;CL:0002057!7.46e-24!42;CL:0000766!2.23e-23!76;CL:0002009!1.16e-22!65;CL:0000839!2.02e-21!70;CL:0000860!6.28e-21!45;CL:0000557!1.38e-20!71;CL:0000144!4.85e-19!625;CL:0000012!3.10e-17!682;CL:0000548!3.48e-17!679;CL:0000004!3.48e-17!679;CL:0000255!3.48e-17!679;CL:0000063!2.54e-15!578;CL:0002371!2.93e-15!591;CL:0000003!1.19e-09!722;CL:0000066!2.09e-09!254;CL:0000763!7.03e-07!112;CL:0000049!7.03e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.40e-18;39!CL:0000234;2.40e-18;39!CL:0000860;7.92e-18;33!CL:0002057;7.92e-18;33!CL:0000576;1.04e-14;48!CL:0000766;3.36e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.91e-28,48;CL:0000234,5.91e-28,48;CL:0002194,2.11e-27,59;CL:0000576,2.11e-27,59;CL:0000040,2.11e-27,59;CL:0000559,2.11e-27,59;CL:0000766,6.47e-26,72;CL:0002009,1.82e-25,61;CL:0000839,5.93e-24,66;CL:0000860,7.46e-24,42;CL:0002057,7.46e-24,42;CL:0000557,5.13e-23,67;CL:0000066,2.45e-09,253;CL:0000763,1.16e-07,108;CL:0000049,1.16e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.27e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.90e-22!448;UBERON:0004120!1.90e-22!448;UBERON:0006603!1.90e-22!448;UBERON:0002371!2.19e-20!80;UBERON:0003081!1.15e-18!216;UBERON:0001474!1.88e-18!86;UBERON:0002405!2.28e-18!115;UBERON:0004765!2.30e-16!101;UBERON:0001434!2.30e-16!101;UBERON:0002193!2.04e-15!112;UBERON:0002390!1.94e-13!102;UBERON:0003061!1.94e-13!102;UBERON:0002204!6.74e-13!167;UBERON:0000468!3.34e-11!659;UBERON:0000062!3.40e-10!511;UBERON:0000922!5.81e-10!612;UBERON:0000923!1.09e-09!604;UBERON:0005291!1.09e-09!604;UBERON:0006598!1.09e-09!604;UBERON:0002532!1.09e-09!604;UBERON:0002050!1.27e-09!605;UBERON:0005423!1.27e-09!605;UBERON:0000467!1.28e-09!625;UBERON:0000480!2.03e-09!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,9.06e-23,315;UBERON:0004120,9.06e-23,315;UBERON:0006603,9.06e-23,315;UBERON:0002371,1.38e-22,76;UBERON:0004765,5.46e-22,90;UBERON:0002405,5.68e-21,93;UBERON:0001474,2.18e-20,82;UBERON:0001434,1.31e-18,100;UBERON:0003081,1.60e-18,203;UBERON:0002193,8.06e-17,108;UBERON:0002390,8.52e-15,98;UBERON:0003061,8.52e-15,98;UBERON:0002204,1.61e-14,167;UBERON:0000922,1.09e-09,592;UBERON:0005423,2.46e-09,581;UBERON:0002050,5.41e-09,564;UBERON:0000923,1.83e-08,560;UBERON:0010316,1.83e-08,560;UBERON:0005291,1.83e-08,560;UBERON:0006598,1.83e-08,560;UBERON:0010317,1.83e-08,560;UBERON:0002532,1.83e-08,560 | |||
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| ||
|short_description=p1@NPC2 | |||
}} | }} |
Latest revision as of 00:50, 16 September 2015
Short description: | p1@NPC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NPC2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000434013_5end |
EntrezGene: | NPC2 |
HGNC: | 14537 |
UniProt: | E7EMS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 5.91e-28 | 48 |
phagocyte | 5.91e-28 | 48 |
monopoietic cell | 2.11e-27 | 59 |
monocyte | 2.11e-27 | 59 |
monoblast | 2.11e-27 | 59 |
promonocyte | 2.11e-27 | 59 |
myeloid leukocyte | 6.47e-26 | 72 |
macrophage dendritic cell progenitor | 1.82e-25 | 61 |
myeloid lineage restricted progenitor cell | 5.93e-24 | 66 |
classical monocyte | 7.46e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.46e-24 | 42 |
granulocyte monocyte progenitor cell | 5.13e-23 | 67 |
epithelial cell | 2.45e-09 | 253 |
myeloid cell | 1.16e-07 | 108 |
common myeloid progenitor | 1.16e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 9.06e-23 | 315 |
mesoderm-derived structure | 9.06e-23 | 315 |
presumptive mesoderm | 9.06e-23 | 315 |
bone marrow | 1.38e-22 | 76 |
skeletal element | 5.46e-22 | 90 |
immune system | 5.68e-21 | 93 |
bone element | 2.18e-20 | 82 |
skeletal system | 1.31e-18 | 100 |
lateral plate mesoderm | 1.60e-18 | 203 |
hemolymphoid system | 8.06e-17 | 108 |
hematopoietic system | 8.52e-15 | 98 |
blood island | 8.52e-15 | 98 |
musculoskeletal system | 1.61e-14 | 167 |
embryo | 1.09e-09 | 592 |
developing anatomical structure | 2.46e-09 | 581 |
embryonic structure | 5.41e-09 | 564 |
germ layer | 1.83e-08 | 560 |
germ layer / neural crest | 1.83e-08 | 560 |
embryonic tissue | 1.83e-08 | 560 |
presumptive structure | 1.83e-08 | 560 |
germ layer / neural crest derived structure | 1.83e-08 | 560 |
epiblast (generic) | 1.83e-08 | 560 |