FFCP PHASE1:Hg19::chr17:26698736..26698763,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:26698736..26698763,+ to FFCP PHASE1:Hg19::chr17:26698736..26698763,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23098 | |EntrezGene=23098 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17074 | |HGNC=17074 | ||
|TSSclassifier=strong | |||
|UniProt=E9PFZ9,Q6SZW1 | |UniProt=E9PFZ9,Q6SZW1 | ||
|association_with_transcript=-223bp_to_ENST00000457710,NM_015077,uc010crl.1_5end | |||
|cluster_id=chr17:26698736..26698763,+ | |||
|description=CAGE_peak_3_at_SARM1_5end | |||
|id=chr17:26698736..26698763,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.09e-18!180;CL:0000133!3.01e-10!59;CL:0002319!3.25e-09!25;CL:0000077!3.97e-09!19;CL:0000333!1.11e-08!41;CL:0000057!6.37e-07!75;CL:0000095!8.22e-07!17;CL:0000123!8.22e-07!17 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.26e-09;19!CL:0002319;1.64e-09;25!CL:0000095;5.68e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,1.52e-10,59;CL:0000077,1.34e-09,19;CL:0002319,1.61e-09,25;CL:0000333,1.39e-08,41;CL:0000095,5.06e-07,17;CL:0000123,5.06e-07,17;CL:0000057,5.53e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.91e-18!94;UBERON:0001016!1.91e-18!94;UBERON:0005743!1.31e-16!86;UBERON:0001017!7.02e-16!82;UBERON:0002346!2.81e-13!90;UBERON:0000955!7.19e-13!69;UBERON:0006238!7.19e-13!69;UBERON:0003075!4.46e-12!86;UBERON:0007284!4.46e-12!86;UBERON:0000924!1.80e-11!173;UBERON:0006601!1.80e-11!173;UBERON:0001049!7.16e-11!57;UBERON:0005068!7.16e-11!57;UBERON:0006241!7.16e-11!57;UBERON:0007135!7.16e-11!57;UBERON:0004121!1.73e-10!169;UBERON:0002616!3.01e-09!59;UBERON:0000475!2.38e-08!365;UBERON:0000119!4.09e-08!312;UBERON:0003056!5.15e-08!61;UBERON:0003080!8.90e-08!42;UBERON:0002780!1.04e-07!41;UBERON:0001890!1.04e-07!41;UBERON:0006240!1.04e-07!41;UBERON:0000483!1.09e-07!309;UBERON:0000033!7.79e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001016;9.14e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.86e-18,89;UBERON:0001017,5.83e-16,81;UBERON:0002346,4.12e-14,86;UBERON:0000955,7.55e-13,68;UBERON:0006238,7.55e-13,68;UBERON:0003075,7.68e-13,82;UBERON:0007284,7.68e-13,82;UBERON:0010314,1.39e-12,132;UBERON:0001049,3.59e-11,56;UBERON:0005068,3.59e-11,56;UBERON:0006241,3.59e-11,56;UBERON:0007135,3.59e-11,56;UBERON:0004121,5.12e-11,171;UBERON:0000924,5.12e-11,171;UBERON:0006601,5.12e-11,171;UBERON:0000073,2.92e-10,53;UBERON:0002616,2.92e-10,53;UBERON:0010371,2.29e-09,104;UBERON:0003056,9.54e-09,61;UBERON:0002780,5.92e-08,41;UBERON:0001890,5.92e-08,41;UBERON:0003080,5.92e-08,41;UBERON:0006240,5.92e-08,41;UBERON:0000119,4.80e-07,309 | |||
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| ||
|short_description=p3@SARM1 | |||
}} | }} |
Latest revision as of 05:43, 19 September 2015
Short description: | p3@SARM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SARM1_5end |
Coexpression cluster: | NA |
Association with transcript: | -223bp_to_ENST00000457710, NM_015077, uc010crl.1_5end |
EntrezGene: | SARM1 |
HGNC: | 17074 |
UniProt: | E9PFZ9Q6SZW1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 1.52e-10 | 59 |
mesothelial cell | 1.34e-09 | 19 |
neural cell | 1.61e-09 | 25 |
migratory neural crest cell | 1.39e-08 | 41 |
neuron associated cell | 5.06e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.06e-07 | 17 |
fibroblast | 5.53e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.86e-18 | 89 |
central nervous system | 5.83e-16 | 81 |
neurectoderm | 4.12e-14 | 86 |
brain | 7.55e-13 | 68 |
future brain | 7.55e-13 | 68 |
neural plate | 7.68e-13 | 82 |
presumptive neural plate | 7.68e-13 | 82 |
structure with developmental contribution from neural crest | 1.39e-12 | 132 |
neural tube | 3.59e-11 | 56 |
neural rod | 3.59e-11 | 56 |
future spinal cord | 3.59e-11 | 56 |
neural keel | 3.59e-11 | 56 |
ectoderm-derived structure | 5.12e-11 | 171 |
ectoderm | 5.12e-11 | 171 |
presumptive ectoderm | 5.12e-11 | 171 |
regional part of nervous system | 2.92e-10 | 53 |
regional part of brain | 2.92e-10 | 53 |
ecto-epithelium | 2.29e-09 | 104 |
pre-chordal neural plate | 9.54e-09 | 61 |
regional part of forebrain | 5.92e-08 | 41 |
forebrain | 5.92e-08 | 41 |
anterior neural tube | 5.92e-08 | 41 |
future forebrain | 5.92e-08 | 41 |
cell layer | 4.80e-07 | 309 |