FFCP PHASE1:Hg19::chr17:46675619..46675642,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:46675619..46675642,- to FFCP PHASE1:Hg19::chr17:46675619..46675642,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3216 | |EntrezGene=3216 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5117 | |HGNC=5117 | ||
|TSSclassifier=strong | |||
|UniProt=P17509 | |UniProt=P17509 | ||
|association_with_transcript=438bp_to_uc002int.1_5end | |||
|cluster_id=chr17:46675619..46675642,- | |||
|description=CAGE_peak_5_at_HOXB6_5end | |||
|id=chr17:46675619..46675642,- | |||
|ontology_enrichment_celltype=CL:1000449!8.07e-14!16;CL:1000497!3.13e-13!18;CL:0002518!3.13e-13!18;CL:0002681!8.59e-12!13;CL:0002584!8.59e-12!13;CL:1000507!4.92e-11!12;CL:1000494!4.92e-11!12 | |||
|ontology_enrichment_celltype_v019=CL:1000449;8.27e-19;15!CL:0002681;5.10e-17;12!CL:0002584;5.10e-17;12!CL:1000497;3.04e-16;17!CL:0002518;3.04e-16;17!CL:1000507;2.50e-13;10!CL:1000494;2.50e-13;10!CL:0000239;8.76e-08;3!CL:1000615;8.76e-08;3!CL:0002306;8.76e-08;3!CL:1000746;1.88e-07;7!CL:1000612;1.88e-07;7!CL:0002188;4.15e-07;5!CL:0002564;5.08e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,5.95e-19,15;CL:0002681,4.29e-17,12;CL:0002584,4.29e-17,12;CL:1000497,2.29e-16,17;CL:0002518,2.29e-16,17;CL:1000507,1.94e-13,10;CL:1000494,1.94e-13,10;CL:0000239,8.64e-08,3;CL:1000615,8.64e-08,3;CL:0002306,8.64e-08,3;CL:1000746,1.54e-07,7;CL:1000612,1.54e-07,7;CL:0002188,3.85e-07,5;CL:0002564,7.76e-07,3;CL:0002149,9.82e-07,6;CL:0002255,9.82e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.20e-08;3!UBERON:0003057;1.20e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:3001,9.82e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000489!7.10e-18!32;UBERON:0000080!1.22e-15!18;UBERON:0002120!1.22e-15!18;UBERON:0004875!1.22e-15!18;UBERON:0005721!1.22e-15!18;UBERON:0005754!1.22e-15!18;UBERON:0007297!1.22e-15!18;UBERON:0003887!1.71e-15!21;UBERON:0000058!7.48e-15!26;UBERON:0002100!8.11e-15!216;UBERON:0002113!8.36e-15!27;UBERON:0003918!8.36e-15!27;UBERON:0005095!8.36e-15!27;UBERON:0007687!8.36e-15!27;UBERON:0006554!9.21e-15!44;UBERON:0006555!9.75e-15!17;UBERON:0005103!9.75e-15!17;UBERON:0000083!9.75e-15!17;UBERON:0009201!9.75e-15!17;UBERON:0004819!9.75e-15!17;UBERON:0006553!9.75e-15!17;UBERON:0003074!9.75e-15!17;UBERON:0003060!9.75e-15!17;UBERON:0001008!3.73e-14!45;UBERON:0004211!8.07e-14!16;UBERON:0001285!8.07e-14!16;UBERON:0007684!8.07e-14!16;UBERON:0003220!8.07e-14!16;UBERON:0004208!8.07e-14!16;UBERON:0004876!2.56e-13!20;UBERON:0005177!5.03e-13!107;UBERON:0001225!8.59e-12!13;UBERON:0008987!8.59e-12!13;UBERON:0009773!4.92e-11!12;UBERON:0001231!4.92e-11!12;UBERON:0004810!4.92e-11!12;UBERON:0000353!8.50e-11!17;UBERON:0009569!1.00e-10!113;UBERON:0002417!6.66e-10!61;UBERON:0000916!6.66e-10!61;UBERON:0005172!9.96e-10!55;UBERON:0005173!9.96e-10!55;UBERON:0003104!2.03e-09!238;UBERON:0009142!2.03e-09!238;UBERON:0005256!2.95e-09!143;UBERON:0000466!4.63e-09!126;UBERON:0003064!9.55e-09!37;UBERON:0000464!1.21e-08!104;UBERON:0001851!1.22e-08!16;UBERON:0003886!1.24e-08!63;UBERON:0003914!7.64e-08!118;UBERON:0002553!3.48e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;2.82e-21;29!UBERON:0006555;8.27e-19;15!UBERON:0004819;8.27e-19;15!UBERON:0001285;8.27e-19;15!UBERON:0007684;8.27e-19;15!UBERON:0002113;1.54e-17;24!UBERON:0011143;1.54e-17;24!UBERON:0001225;5.10e-17;12!UBERON:0008987;5.10e-17;12!UBERON:0000353;7.64e-16;15!UBERON:0006554;3.93e-15;30!UBERON:0001008;3.93e-15;30!UBERON:0004211;2.50e-13;10!UBERON:0009773;2.50e-13;10!UBERON:0001231;2.50e-13;10!UBERON:0004810;2.50e-13;10!UBERON:0001851;3.73e-13;15!UBERON:0002240;1.20e-08;3!UBERON:0005174;1.20e-08;3!UBERON:0001137;1.20e-08;3!UBERON:0000058;3.47e-08;10!UBERON:0006947;3.76e-08;3!UBERON:0004054;3.76e-08;3!UBERON:0006853;8.76e-08;3!UBERON:0007685;8.76e-08;3!UBERON:0004134;8.76e-08;3!UBERON:0000074;1.88e-07;7!UBERON:0001229;1.88e-07;7!UBERON:0005172;4.24e-07;52!UBERON:0005173;4.24e-07;52!UBERON:0002242;5.08e-07;3!UBERON:0011135;5.64e-07;5!UBERON:0002216;5.64e-07;5!UBERON:0011134;5.64e-07;5!UBERON:0002209;5.64e-07;5!UBERON:0002213;5.64e-07;5!UBERON:0007844;5.64e-07;5!UBERON:0011138;5.64e-07;5!UBERON:0001130;5.64e-07;5!UBERON:0001066;5.64e-07;5!UBERON:0001468;5.64e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,6.43e-25,31;UBERON:0002113,3.72e-21,26;UBERON:0003918,3.72e-21,26;UBERON:0011143,3.72e-21,26;UBERON:0005095,3.72e-21,26;UBERON:0007687,3.72e-21,26;UBERON:0006555,5.75e-21,16;UBERON:0004819,5.75e-21,16;UBERON:0004211,5.95e-19,15;UBERON:0009773,5.95e-19,15;UBERON:0001231,5.95e-19,15;UBERON:0001285,5.95e-19,15;UBERON:0007684,5.95e-19,15;UBERON:0004208,5.95e-19,15;UBERON:0001225,4.29e-17,12;UBERON:0008987,4.29e-17,12;UBERON:0000353,6.80e-16,15;UBERON:0000058,1.04e-14,19;UBERON:0004810,1.94e-13,10;UBERON:0001851,3.26e-13,15;UBERON:0005172,1.76e-12,54;UBERON:0005173,1.76e-12,54;UBERON:0006554,2.51e-12,47;UBERON:0001008,5.78e-12,48;UBERON:0002417,7.24e-12,60;UBERON:0000916,7.24e-12,60;UBERON:0005177,9.39e-12,101;UBERON:0000080,2.32e-11,9;UBERON:0002120,2.32e-11,9;UBERON:0004875,2.32e-11,9;UBERON:0005721,2.32e-11,9;UBERON:0005754,2.32e-11,9;UBERON:0007297,2.32e-11,9;UBERON:0009569,9.26e-11,112;UBERON:0003887,1.96e-10,12;UBERON:0005103,1.94e-09,8;UBERON:0000083,1.94e-09,8;UBERON:0009201,1.94e-09,8;UBERON:0006553,1.94e-09,8;UBERON:0003074,1.94e-09,8;UBERON:0003060,1.94e-09,8;UBERON:0003103,2.54e-09,68;UBERON:0004876,4.39e-09,11;UBERON:0002240,1.23e-08,3;UBERON:0005174,1.23e-08,3;UBERON:0001137,1.23e-08,3;UBERON:0003104,1.41e-08,160;UBERON:0009142,1.41e-08,160;UBERON:0006947,3.59e-08,3;UBERON:0004054,3.59e-08,3;UBERON:0006853,8.64e-08,3;UBERON:0007685,8.64e-08,3;UBERON:0004134,8.64e-08,3;UBERON:0010532,1.54e-07,7;UBERON:0000074,1.54e-07,7;UBERON:0001229,1.54e-07,7;UBERON:0001230,1.54e-07,7;UBERON:0003220,1.54e-07,7;UBERON:0005749,1.54e-07,7;UBERON:0004199,1.54e-07,7;UBERON:0004209,1.54e-07,7;UBERON:0004198,1.54e-07,7;UBERON:0002100,4.57e-07,199;UBERON:0002242,7.76e-07,3;UBERON:0003068,7.76e-07,3;UBERON:0002328,7.76e-07,3;UBERON:0004880,7.76e-07,3;UBERON:0011135,8.93e-07,5;UBERON:0002216,8.93e-07,5;UBERON:0011134,8.93e-07,5;UBERON:0002209,8.93e-07,5;UBERON:0002213,8.93e-07,5;UBERON:0005856,8.93e-07,5;UBERON:0005866,8.93e-07,5;UBERON:0005863,8.93e-07,5;UBERON:0007844,8.93e-07,5;UBERON:0011138,8.93e-07,5;UBERON:0001130,8.93e-07,5;UBERON:0001066,8.93e-07,5;UBERON:0001468,8.93e-07,5 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.704772020479856,0,0,0,0,0,1.30592814099919,4.42321085702716,0.697801167972428,0,0,1.23766352960047,0.331397375727916,0,1.20538905604795,0.730310090387373,0.975865597581014,0,0.204000691244253,0,0,0,0,0.152826811495903,0.164201178899891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0.860234595106124,0.694281003215189,0,0,0,0.208994966536811,1.29208379584664,1.42306505074684,0.33472061276467,0,1.52054421143703,0.732186172644509,0,0.81014194788176,0.357198913136319,0.22452937262617,0.563057402416611,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0.448346041655403,1.05691048779388,0.809364721840658,1.12360645361799,0,0,0,0,0,1.82032272387605,1.43723628363248,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0.412210116953756,0.257640540045629,0,0.168776332241266,0,0,0.368199594569197,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,2.32387885739037,0.10366105501537,0,0,0,0,1.38134921352481,1.85747171212792,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0.925971025153221,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0,0,0,0,14.7798971368783,0.616339038092582,0.414656231081544,0.288239906833923,0.12624243342638,0.761974731506028,0.381988425558278,0,1.71072446022705,0.308482478109971,0.300343057843917,0,0,0,0,0.517086863031111,0,0,0,0,0,1.41849132023278,0,0.857867961948885,0,1.64648067356154,0.325736184293735,1.42156779497018,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,1.47229790062968,2.00068208423871,1.08506009479894,0,0,0,0,0,0,1.03473071292505,0,0.368738337083406,0,0,0,0,0,0,0,0,0.30239029332968,0.496215615637554,0.153461973288062,0,1.28139149255701,0,0.482561763430822,0,1.54209693802656,0.710246901252508,1.47828880824856,1.55776328755086,0.581051892299796,0.604297247958111,0.200506470303285,0,0,0,0,4.06079651616671,3.38867483259425,0.784349769176855,1.46139224653261,1.47772280450026,1.13733384070897,1.87103075804167,1.29549549661284,4.62681758070868,0.812839312631559,1.50506932156456,4.58777291481069,2.49322802678617,2.0148727924996,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0.193341436584244,0.308097234229289,0.15350367472613,0.413509717453592,0,0,0.511359764496605,0.0890320356467374,0,0,0,0,0.464845549297286,0.31481234683064,0,0.308033580176089,0,0,0,0,0,0.316379424718726,0.38126038784765,3.32667128704734,2.99557291623744,0,0.78494864019923,0.539617372749944,0.823611089208164,0.471249609382746,0.606547444719948,0,0,0.975267478179181,0.243713489631284,0,0,0,0,0,0,0,1.15755106853338,0,0,0.30982349809975,0,0.717056761020258,0.491245205065606,0,0,0,0,0,0,0,0,0,0.376575203107117,0.43050537267123,1.68471475667626,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12318871245384,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0.334330152832435,9.66062899141805,0,0.296964680832639,0,0,0,1.11308705022906,0,0,0.796991953004279,0,0.251932747854276,2.14764233254525,0,0,1.61763032065188,0,0,0.0986434056369336,0,0,0,0,0,0,0,4.34999745260876,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0.615602068030377,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.442287822516696,0,0,0,0,0,0,0,0,0,0.728341138602278,6.31335044559025,0,0,0.063186579628488,0.300646838828985,2.07376382794494,0.664653872707185,0.330991955875499,0,0,11.9536009332513,1.8027707491708,0,0,0.0870592065804026,4.54289337429278,1.71986032471617,0,0,0,0.387956065953678,0,0,0.548167698587004,0.19871461170299,0,0.977756913674015,0,0,0,0.864542502924636,4.92507363513437,17.5026897819204,0,2.23654564017779,0.235694034616795,1.49494626680975,0.627617077873999,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0,0,3.23103399926713,5.4028225779048,0,0.179287339332845,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0.681552087141687,0.339936274560377,0.293104467356165,0,0.258565912723101,0,0,0,1.70859860108311,0.471612915298998,0.828478110694391,0,0.395223263795889,0,0,0,0,0.306345576763462,0.327872630709804,0.314108192500469,0,0,0,0,0,5.27819425001759,0,0,0.303298235083296,0.285465333544967,0.235265819698172,0,2.17381542916238,0.597019211547496,0.233713309847224,0,0,0,0,0,0,0,0,0.318593534327405,0.449803112163605,0,0.414706207840855,1.06336685823198,0,0.300515217994437,0,0,0,0.107410557042488,0,0,5.60038870528415,0,0,0,0,0,0,0,0,0,0,0,0,1.23682402162117,0,0,0,0,0.607719912354764,0,0,0,0,0.327609848846413,0,3.16968185037941,0,0.640150378164845,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,17.6125564622803,0,0,0,0,0,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| ||
|short_description=p5@HOXB6 | |||
}} | }} |
Latest revision as of 07:24, 25 September 2015
Short description: | p5@HOXB6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXB6_5end |
Coexpression cluster: | NA |
Association with transcript: | 438bp_to_uc002int.1_5end |
EntrezGene: | HOXB6 |
HGNC: | 5117 |
UniProt: | P17509 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 5.95e-19 | 15 |
kidney cortical cell | 4.29e-17 | 12 |
renal cortical epithelial cell | 4.29e-17 | 12 |
kidney cell | 2.29e-16 | 17 |
kidney epithelial cell | 2.29e-16 | 17 |
kidney tubule cell | 1.94e-13 | 10 |
nephron tubule epithelial cell | 1.94e-13 | 10 |
brush border epithelial cell | 8.64e-08 | 3 |
kidney cortex tubule cell | 8.64e-08 | 3 |
epithelial cell of proximal tubule | 8.64e-08 | 3 |
glomerular cell | 1.54e-07 | 7 |
kidney corpuscule cell | 1.54e-07 | 7 |
glomerular endothelial cell | 3.85e-07 | 5 |
nucleus pulposus cell of intervertebral disc | 7.76e-07 | 3 |
epithelial cell of uterus | 9.82e-07 | 6 |
stromal cell of endometrium | 9.82e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 9.82e-07 | 6 |