FFCP PHASE1:Hg19::chr17:48266123..48266159,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:48266123..48266159,- to FFCP PHASE1:Hg19::chr17:48266123..48266159,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000511732_5end | |||
|cluster_id=chr17:48266123..48266159,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_25_at_COL1A1_5end | |||
|id=chr17:48266123..48266159,- | |||
|ontology_enrichment_celltype=CL:0000055!3.74e-38!180;CL:0000057!9.50e-26!75;CL:0000183!8.92e-16!59;CL:0000680!3.93e-15!57;CL:0000056!3.93e-15!57;CL:0000355!3.93e-15!57;CL:0000187!1.80e-14!54;CL:0000393!3.08e-12!60;CL:0000211!3.08e-12!60;CL:0000048!5.10e-12!430;CL:0000723!4.88e-11!436;CL:0000034!1.44e-10!444;CL:0000192!2.42e-10!42;CL:0000514!2.42e-10!42;CL:0002620!1.92e-08!23;CL:0002371!3.72e-08!591;CL:0002334!6.95e-08!12;CL:0000144!8.87e-08!625 | |||
|ontology_enrichment_celltype_v019=CL:0000134;2.24e-12;55!CL:0000723;3.99e-11;61!CL:0000048;6.59e-11;58!CL:0002320;4.55e-10;188!CL:0002334;2.92e-09;12!CL:0000187;3.19e-09;55!CL:0000057;4.91e-09;73!CL:0000499;1.71e-08;28!CL:0000034;2.99e-08;69!CL:0000327;6.75e-08;15!CL:0000393;1.98e-07;61!CL:0000211;1.98e-07;61!CL:0002570;4.38e-07;8!CL:0000192;4.49e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.52e-24,76;CL:0000048,2.70e-18,427;CL:0000723,2.68e-17,433;CL:0000034,5.03e-16,441;CL:0000680,6.68e-15,58;CL:0000056,6.68e-15,58;CL:0000355,6.68e-15,58;CL:0000187,8.78e-15,55;CL:0000393,5.70e-12,61;CL:0000211,5.70e-12,61;CL:0002320,1.54e-10,361;CL:0000192,5.39e-10,43;CL:0000514,5.39e-10,43;CL:0002334,3.17e-09,12;CL:0000134,1.04e-08,354;CL:0000499,1.79e-08,28;CL:0000327,6.99e-08,15;CL:0000222,4.29e-07,121;CL:0002570,4.47e-07,8;CL:0000219,7.95e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000355;9.57e-09;58!CL:0000514;4.49e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.44e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.19e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.53e-19!83;UBERON:0002329!5.53e-19!83;UBERON:0003077!5.53e-19!83;UBERON:0003059!5.53e-19!83;UBERON:0007282!5.53e-19!83;UBERON:0009618!5.53e-19!83;UBERON:0007285!5.53e-19!83;UBERON:0004290!8.37e-17!70;UBERON:0002385!6.77e-16!63;UBERON:0001015!6.77e-16!63;UBERON:0000383!6.77e-16!63;UBERON:0001134!9.74e-16!61;UBERON:0002036!9.74e-16!61;UBERON:0003082!9.74e-16!61;UBERON:0005256!7.01e-14!143;UBERON:0000486!2.23e-13!82;UBERON:0002100!2.48e-09!216;UBERON:0001013!5.63e-08!14;UBERON:0000475!1.09e-07!365;UBERON:0002199!1.54e-07!45;UBERON:0002416!1.54e-07!45;UBERON:0004872!2.24e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.73e-09;198!UBERON:0001013;8.97e-08;14!UBERON:0003104;3.91e-07;7!UBERON:0009142;3.91e-07;7!UBERON:0002204;7.73e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.24e-15,78;UBERON:0001134,2.63e-15,62;UBERON:0002036,2.63e-15,62;UBERON:0003082,2.63e-15,62;UBERON:0002385,4.82e-15,64;UBERON:0001015,4.82e-15,64;UBERON:0000383,4.82e-15,64;UBERON:0007524,8.11e-15,73;UBERON:0002329,1.34e-14,71;UBERON:0003059,1.34e-14,71;UBERON:0007282,1.34e-14,71;UBERON:0004290,1.34e-14,71;UBERON:0009618,1.34e-14,71;UBERON:0003077,3.60e-14,72;UBERON:0007285,3.60e-14,72;UBERON:0000486,8.02e-12,83;UBERON:0002384,8.33e-11,371;UBERON:0003104,9.84e-11,160;UBERON:0009142,9.84e-11,160;UBERON:0005256,3.45e-10,122;UBERON:0001013,9.65e-08,14;UBERON:0000926,3.37e-07,315;UBERON:0004120,3.37e-07,315;UBERON:0006603,3.37e-07,315;UBERON:0002199,6.85e-07,46;UBERON:0002416,6.85e-07,46 | |||
|phase1_expression=7.44881355009282,18.1985445307336,13.1087595809253,14.0102617694383,24.5828601935008,17.4467704820074,25.3299878168311,1.26343974685366,0.522371256399677,0.491467873003018,2.09340350391728,1.74753097704138,8.44054330331051,3.58922423584135,7.95353701746998,4.70627602516243,0.602694528023977,0,1.95173119516203,3.81675280038043,8.97603041474713,8.14982275843028,0,0.547497700291537,1.38096903554283,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.0090986102339,6.70700859703636,4.47518966452356,7.59022220007589,12.0321098552613,12.0222610737484,16.7010048880731,13.6257763684738,1.22895262313288,3.54767035940102,2.63504357079378,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.3455695364612,8.1043527465331,3.04541115870403,48.7622255272983,14.1867352879343,7.8494864019923,12.8098794875646,29.6001058100592,1.8672662123986,2.96363478553314,1.9615428373615,10.8977347904351,18.43762958336,1.87457145467037,0.312160076830321,0,1.79338416662161,0.352303495931295,0.485618833104395,0.702254033511242,0.816616685019573,0.491337269247072,2.16984140469107,27.3240657174872,29.6720315134268,17.2930658768225,22.2771623963034,0.673344455816265,2.00189631795143,0.277064115484183,7.90159717585508,7.66219489497549,12.3195208303409,3.28953331164061,10.7633781413317,13.6676728843883,13.563641674212,14.1042815159669,8.03809728059823,12.6243864622358,7.07244054060041,11.1392379279236,7.79496041289589,7.06814567883521,7.36399189138395,11.6385160909545,14.9104028856978,5.54136540252021,4.0694542154517,0,0,0,0.365921118388786,0,0.232387885739037,0.829288440122964,0,0,6.25798129319264,14.1513006402435,2.76269842704961,3.71494342425583,5.0531563716871,0.236613600079688,0,0.241011029883482,0,0,0,0,0,0,0,9.81692416624121,16.8745344645874,42.6325263018072,0,0,0.590789906681404,0,0,2.57351715447788,0,0,0,0,1.3032332212413,1.03993478527958,1.44331342025273,0.463721619900307,9.39269553886573,0,0,0,0,0,0,0,0,0,1.34385702559088,0.141775097242386,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0.205654985406647,0,0,1.90622843387113,6.10344096366592,2.3468251462704,6.20504235637333,25.0359512096318,14.370146793452,10.1056484302251,8.32059495290929,4.11531798819427,4.25547396069835,4.26275486425759,13.7258873911822,48.2933228798384,13.9950857252731,3.58309802723109,9.24019066730619,13.4631818398683,1.20575750823834,1.74306691720059,1.09970290300263,0,0,0,14.1378664740034,22.9723871668228,2.85273810081437,2.89562613335158,2.87666851570537,0.895304816199478,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,3.55805325985506,3.00102312635806,3.52644530809656,53.6564822749482,52.4581227063656,29.3326491963119,12.651272819213,8.72743689210385,13.6444502433591,10.3473071292505,10.627609576567,8.48098175291834,3.0409265063829,15.859893754482,28.1377607524902,0,0,0,0.606255142892519,23.3009615314696,13.3051729065059,16.8713309316768,11.0492620767405,40.6957136927957,26.0122472989073,5.11707249066703,36.3529861784553,23.7468906311986,5.39733928309294,11.8966355959795,1.23190734020714,5.19254429183621,5.57809816607804,0,0.200506470303285,0,7.69256802702865,9.83292307236272,11.6700729313887,0,0.0770153371044148,1.56869953835371,0,0,0,0,2.80690690932781,3.08454505380579,2.70946437543853,6.52196706011309,0,0,0.223874754722178,0,0,0,0.328014645699706,0.650756789328606,0.103041011647722,3.11336180382368,1.56768049849117,0,1.30012049207304,11.2478750890912,3.19013370364003,1.54048617114644,2.30255512089194,1.92971201478343,4.72649077420404,7.54086808353988,2.38634556765083,17.7173750937007,0.495854746082934,0.576570202095319,0,0.4046311234222,6.507837690162,39.35154335383,0.6970372701606,3.08033580176089,0,0.869932992075073,1.29726953372744,1.43124886741991,0,3.79655309662471,10.4846606658104,6.90924036540602,6.41908482050881,2.54562598340749,4.70969184119538,4.13706652441624,10.157870100234,5.1837457032102,0.404364963146632,0,2.10629228119491,6.82687234725426,3.1682753652067,2.11300293513511,5.32349654491144,19.7967604735198,9.04064932961942,4.41092274836899,1.32687795048244,0.876901770507525,7.52408194546694,8.52663177660623,1.21746226177622,2.478587984798,5.63391205064483,3.44187245289724,6.484436706866,3.5667105148125,1.77380532035299,9.28873595309722,13.1717957183961,3.79473173765715,2.44954304171488,0.0962221127255121,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.568272293612826,0.23874448473769,0,0,0,0,0,0,0,0.597743964753209,0.276283915531148,0,0,0.123084805461069,18.0402960843848,0,0,0,0.493217028184668,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0,0,0,0,0,0,0,3.30886111566327,0.341826167541004,0,0,0,0.31900115973192,4.67147726349498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,2.4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| ||
|short_description=p25@COL1A1 | |||
}} | }} |
Latest revision as of 00:16, 16 September 2015
Short description: | p25@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_25_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_ENST00000511732_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.52e-24 | 76 |
multi fate stem cell | 2.70e-18 | 427 |
somatic stem cell | 2.68e-17 | 433 |
stem cell | 5.03e-16 | 441 |
muscle precursor cell | 6.68e-15 | 58 |
myoblast | 6.68e-15 | 58 |
multi-potent skeletal muscle stem cell | 6.68e-15 | 58 |
muscle cell | 8.78e-15 | 55 |
electrically responsive cell | 5.70e-12 | 61 |
electrically active cell | 5.70e-12 | 61 |
connective tissue cell | 1.54e-10 | 361 |
smooth muscle cell | 5.39e-10 | 43 |
smooth muscle myoblast | 5.39e-10 | 43 |
preadipocyte | 3.17e-09 | 12 |
mesenchymal cell | 1.04e-08 | 354 |
stromal cell | 1.79e-08 | 28 |
extracellular matrix secreting cell | 6.99e-08 | 15 |
mesodermal cell | 4.29e-07 | 121 |
mesenchymal stem cell of adipose | 4.47e-07 | 8 |
motile cell | 7.95e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.24e-15 | 78 |
skeletal muscle tissue | 2.63e-15 | 62 |
striated muscle tissue | 2.63e-15 | 62 |
myotome | 2.63e-15 | 62 |
muscle tissue | 4.82e-15 | 64 |
musculature | 4.82e-15 | 64 |
musculature of body | 4.82e-15 | 64 |
dense mesenchyme tissue | 8.11e-15 | 73 |
somite | 1.34e-14 | 71 |
presomitic mesoderm | 1.34e-14 | 71 |
presumptive segmental plate | 1.34e-14 | 71 |
dermomyotome | 1.34e-14 | 71 |
trunk paraxial mesoderm | 1.34e-14 | 71 |
paraxial mesoderm | 3.60e-14 | 72 |
presumptive paraxial mesoderm | 3.60e-14 | 72 |
multilaminar epithelium | 8.02e-12 | 83 |
connective tissue | 8.33e-11 | 371 |
mesenchyme | 9.84e-11 | 160 |
entire embryonic mesenchyme | 9.84e-11 | 160 |
trunk mesenchyme | 3.45e-10 | 122 |
adipose tissue | 9.65e-08 | 14 |
mesoderm | 3.37e-07 | 315 |
mesoderm-derived structure | 3.37e-07 | 315 |
presumptive mesoderm | 3.37e-07 | 315 |
integument | 6.85e-07 | 46 |
integumental system | 6.85e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.19e-07 | 14 |