FFCP PHASE1:Hg19::chr18:25531243..25531386,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:25531243..25531386,- to FFCP PHASE1:Hg19::chr18:25531243..25531386,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1000 | |EntrezGene=1000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1759 | |HGNC=1759 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=418bp_to_BX648579_5end | |||
|cluster_id=chr18:25531243..25531386,- | |||
|description=CAGE_peak_4_at_CDH2_5end | |||
|id=chr18:25531243..25531386,- | |||
|ontology_enrichment_celltype=CL:0000055!7.74e-17!180;CL:0000393!9.38e-10!60;CL:0000211!9.38e-10!60;CL:0000222!5.64e-09!119;CL:0000680!5.69e-09!57;CL:0000056!5.69e-09!57;CL:0000355!5.69e-09!57;CL:0000359!8.04e-09!32;CL:0000187!1.86e-08!54;CL:0002321!7.68e-08!248;CL:0000220!8.41e-08!246;CL:0000183!9.52e-08!59;CL:0000077!1.49e-07!19;CL:0000192!2.48e-07!42;CL:0000514!2.48e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.93e-09;32!CL:0000077;7.99e-08;19!CL:0002334;7.66e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.90e-09,32;CL:0000393,2.95e-08,61;CL:0000211,2.95e-08,61;CL:0000077,4.42e-08,19;CL:0000680,1.93e-07,58;CL:0000056,1.93e-07,58;CL:0000355,1.93e-07,58;CL:0002334,6.87e-07,12;CL:0000187,6.89e-07,55;CL:0000192,7.62e-07,43;CL:0000514,7.62e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!4.76e-19!194;UBERON:0000483!1.20e-15!309;UBERON:0000119!4.54e-15!312;UBERON:0000477!3.67e-14!286;UBERON:0000475!5.38e-14!365;UBERON:0000481!1.17e-13!347;UBERON:0004111!6.63e-13!241;UBERON:0003914!1.68e-12!118;UBERON:0003075!1.81e-11!86;UBERON:0007284!1.81e-11!86;UBERON:0000073!3.59e-11!94;UBERON:0001016!3.59e-11!94;UBERON:0005743!1.10e-10!86;UBERON:0001017!2.05e-10!82;UBERON:0007100!2.06e-10!27;UBERON:0002346!5.03e-10!90;UBERON:0000468!5.95e-10!659;UBERON:0001637!1.48e-09!42;UBERON:0003509!1.48e-09!42;UBERON:0004572!1.48e-09!42;UBERON:0002020!1.55e-09!34;UBERON:0003528!1.55e-09!34;UBERON:0000948!3.28e-09!24;UBERON:0005498!3.28e-09!24;UBERON:0004140!3.28e-09!24;UBERON:0009881!3.28e-09!24;UBERON:0004141!3.28e-09!24;UBERON:0003084!3.28e-09!24;UBERON:0007005!3.28e-09!24;UBERON:0004139!3.28e-09!24;UBERON:0004291!3.28e-09!24;UBERON:0004872!7.12e-09!84;UBERON:0002791!1.41e-08!33;UBERON:0001869!2.03e-08!32;UBERON:0001893!2.16e-08!34;UBERON:0001049!2.36e-08!57;UBERON:0005068!2.36e-08!57;UBERON:0006241!2.36e-08!57;UBERON:0007135!2.36e-08!57;UBERON:0000955!2.87e-08!69;UBERON:0006238!2.87e-08!69;UBERON:0002780!6.94e-08!41;UBERON:0001890!6.94e-08!41;UBERON:0006240!6.94e-08!41;UBERON:0003056!8.03e-08!61;UBERON:0000467!9.95e-08!625;UBERON:0001134!1.13e-07!61;UBERON:0002036!1.13e-07!61;UBERON:0003082!1.13e-07!61;UBERON:0000956!1.16e-07!25;UBERON:0000203!1.16e-07!25;UBERON:0005256!1.22e-07!143;UBERON:0000480!1.46e-07!626;UBERON:0003080!2.29e-07!42;UBERON:0001981!2.99e-07!60;UBERON:0007500!2.99e-07!60;UBERON:0004537!2.99e-07!60;UBERON:0006965!2.99e-07!60;UBERON:0004573!3.01e-07!33;UBERON:0004571!3.01e-07!33;UBERON:0002616!3.06e-07!59;UBERON:0002100!3.74e-07!216;UBERON:0002385!3.83e-07!63;UBERON:0001015!3.83e-07!63;UBERON:0000383!3.83e-07!63;UBERON:0001009!4.19e-07!113;UBERON:0000490!6.09e-07!138;UBERON:0000922!7.25e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;2.55e-10;25!UBERON:0000948;5.70e-09;22!UBERON:0004573;6.91e-07;33!UBERON:0004571;6.91e-07;33!UBERON:0001637;7.25e-07;42!UBERON:0003509;7.25e-07;42!UBERON:0004572;7.25e-07;42!UBERON:0003528;8.88e-07;34!UBERON:0002020;8.88e-07;34 | |||
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| ||
|short_description=p4@CDH2 | |||
}} | }} |
Latest revision as of 02:59, 19 September 2015
Short description: | p4@CDH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDH2_5end |
Coexpression cluster: | NA |
Association with transcript: | 418bp_to_BX648579_5end |
EntrezGene: | CDH2 |
HGNC: | 1759 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.90e-09 | 32 |
electrically responsive cell | 2.95e-08 | 61 |
electrically active cell | 2.95e-08 | 61 |
mesothelial cell | 4.42e-08 | 19 |
muscle precursor cell | 1.93e-07 | 58 |
myoblast | 1.93e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.93e-07 | 58 |
preadipocyte | 6.87e-07 | 12 |
muscle cell | 6.89e-07 | 55 |
smooth muscle cell | 7.62e-07 | 43 |
smooth muscle myoblast | 7.62e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
tube | 5.40e-17 | 192 |
epithelial tube | 1.56e-12 | 117 |
epithelium | 5.45e-12 | 306 |
cell layer | 1.95e-11 | 309 |
primary circulatory organ | 2.27e-11 | 27 |
anatomical conduit | 3.53e-11 | 240 |
structure with developmental contribution from neural crest | 1.08e-10 | 132 |
heart | 5.47e-10 | 24 |
primitive heart tube | 5.47e-10 | 24 |
primary heart field | 5.47e-10 | 24 |
anterior lateral plate mesoderm | 5.47e-10 | 24 |
heart tube | 5.47e-10 | 24 |
heart primordium | 5.47e-10 | 24 |
cardiac mesoderm | 5.47e-10 | 24 |
cardiogenic plate | 5.47e-10 | 24 |
heart rudiment | 5.47e-10 | 24 |
neural plate | 1.41e-09 | 82 |
presumptive neural plate | 1.41e-09 | 82 |
artery | 2.85e-09 | 42 |
arterial blood vessel | 2.85e-09 | 42 |
arterial system | 2.85e-09 | 42 |
splanchnic layer of lateral plate mesoderm | 1.13e-08 | 83 |
nervous system | 2.34e-08 | 89 |
neurectoderm | 2.47e-08 | 86 |
brain grey matter | 4.80e-08 | 34 |
gray matter | 4.80e-08 | 34 |
central nervous system | 5.31e-08 | 81 |
systemic artery | 1.61e-07 | 33 |
systemic arterial system | 1.61e-07 | 33 |
mesenchyme | 2.83e-07 | 160 |
entire embryonic mesenchyme | 2.83e-07 | 160 |
regional part of telencephalon | 2.90e-07 | 32 |
circulatory system | 9.35e-07 | 112 |