FFCP PHASE1:Hg19::chr1:12290121..12290141,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:12290121..12290141,+ to FFCP PHASE1:Hg19::chr1:12290121..12290141,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55187 | |EntrezGene=55187 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23595 | |HGNC=23595 | ||
|TSSclassifier=strong | |||
|UniProt=Q5THJ4 | |UniProt=Q5THJ4 | ||
|association_with_transcript=0bp_to_ENST00000356315,ENST00000358136_5end | |||
|cluster_id=chr1:12290121..12290141,+ | |||
|description=CAGE_peak_2_at_VPS13D_5end | |||
|id=chr1:12290121..12290141,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.94e-40!115;UBERON:0001049!1.29e-19!57;UBERON:0005068!1.29e-19!57;UBERON:0006241!1.29e-19!57;UBERON:0007135!1.29e-19!57;UBERON:0003080!1.96e-17!42;UBERON:0002616!2.76e-17!59;UBERON:0002780!7.06e-17!41;UBERON:0001890!7.06e-17!41;UBERON:0006240!7.06e-17!41;UBERON:0002020!1.42e-13!34;UBERON:0003528!1.42e-13!34;UBERON:0001893!1.66e-13!34;UBERON:0003075!2.47e-13!86;UBERON:0007284!2.47e-13!86;UBERON:0002346!6.15e-13!90;UBERON:0002791!6.45e-13!33;UBERON:0001869!7.15e-13!32;UBERON:0000955!7.47e-13!69;UBERON:0006238!7.47e-13!69;UBERON:0001017!1.52e-12!82;UBERON:0005743!1.25e-11!86;UBERON:0000153!1.55e-11!129;UBERON:0007811!1.55e-11!129;UBERON:0002619!8.90e-11!22;UBERON:0000033!2.09e-10!123;UBERON:0003056!2.52e-10!61;UBERON:0001950!1.17e-09!20;UBERON:0000956!2.51e-09!25;UBERON:0000203!2.51e-09!25;UBERON:0000073!7.70e-09!94;UBERON:0001016!7.70e-09!94;UBERON:0004121!5.32e-08!169;UBERON:0000924!6.35e-08!173;UBERON:0006601!6.35e-08!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.56e-13;41!UBERON:0001890;5.56e-13;41!UBERON:0001869;3.15e-12;32!UBERON:0002791;4.05e-12;32!UBERON:0007023;4.51e-12;114!UBERON:0003528;4.63e-12;34!UBERON:0002020;4.63e-12;34!UBERON:0001893;5.17e-12;34!UBERON:0000073;4.04e-11;53!UBERON:0002616;4.04e-11;53!UBERON:0002619;6.34e-11;22!UBERON:0001950;9.60e-10;20!UBERON:0000956;1.96e-09;25!UBERON:0000203;1.96e-09;25!UBERON:0002420;8.08e-07;9!UBERON:0007245;8.08e-07;9!UBERON:0010009;8.08e-07;9!UBERON:0010011;8.08e-07;9!UBERON:0000454;8.08e-07;9!UBERON:0001017;9.20e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.68e-43,114;UBERON:0001049,2.33e-20,56;UBERON:0005068,2.33e-20,56;UBERON:0006241,2.33e-20,56;UBERON:0007135,2.33e-20,56;UBERON:0000073,3.61e-19,53;UBERON:0002616,3.61e-19,53;UBERON:0002780,1.37e-17,41;UBERON:0001890,1.37e-17,41;UBERON:0003080,1.37e-17,41;UBERON:0006240,1.37e-17,41;UBERON:0003528,4.46e-14,34;UBERON:0002020,4.46e-14,34;UBERON:0001893,5.27e-14,34;UBERON:0003075,8.74e-14,82;UBERON:0007284,8.74e-14,82;UBERON:0001869,2.50e-13,32;UBERON:0002791,3.30e-13,32;UBERON:0002346,4.69e-13,86;UBERON:0000955,6.89e-13,68;UBERON:0006238,6.89e-13,68;UBERON:0001017,7.06e-13,81;UBERON:0010371,8.55e-13,104;UBERON:0002619,2.17e-11,22;UBERON:0003056,2.71e-10,61;UBERON:0001950,3.38e-10,20;UBERON:0001016,6.43e-10,89;UBERON:0010314,6.54e-10,132;UBERON:0000956,1.44e-09,25;UBERON:0000203,1.44e-09,25;UBERON:0004121,2.99e-08,171;UBERON:0000924,2.99e-08,171;UBERON:0006601,2.99e-08,171 | |||
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| ||
|short_description=p2@VPS13D | |||
}} | }} |
Latest revision as of 13:56, 16 September 2015
Short description: | p2@VPS13D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VPS13D_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000356315, ENST00000358136_5end |
EntrezGene: | VPS13D |
HGNC: | 23595 |
UniProt: | Q5THJ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.68e-43 | 114 |
neural tube | 2.33e-20 | 56 |
neural rod | 2.33e-20 | 56 |
future spinal cord | 2.33e-20 | 56 |
neural keel | 2.33e-20 | 56 |
regional part of nervous system | 3.61e-19 | 53 |
regional part of brain | 3.61e-19 | 53 |
regional part of forebrain | 1.37e-17 | 41 |
forebrain | 1.37e-17 | 41 |
anterior neural tube | 1.37e-17 | 41 |
future forebrain | 1.37e-17 | 41 |
brain grey matter | 4.46e-14 | 34 |
gray matter | 4.46e-14 | 34 |
telencephalon | 5.27e-14 | 34 |
neural plate | 8.74e-14 | 82 |
presumptive neural plate | 8.74e-14 | 82 |
cerebral hemisphere | 2.50e-13 | 32 |
regional part of telencephalon | 3.30e-13 | 32 |
neurectoderm | 4.69e-13 | 86 |
brain | 6.89e-13 | 68 |
future brain | 6.89e-13 | 68 |
central nervous system | 7.06e-13 | 81 |
ecto-epithelium | 8.55e-13 | 104 |
regional part of cerebral cortex | 2.17e-11 | 22 |
pre-chordal neural plate | 2.71e-10 | 61 |
neocortex | 3.38e-10 | 20 |
nervous system | 6.43e-10 | 89 |
structure with developmental contribution from neural crest | 6.54e-10 | 132 |
cerebral cortex | 1.44e-09 | 25 |
pallium | 1.44e-09 | 25 |
ectoderm-derived structure | 2.99e-08 | 171 |
ectoderm | 2.99e-08 | 171 |
presumptive ectoderm | 2.99e-08 | 171 |