FFCP PHASE1:Hg19::chr1:43736324..43736409,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:43736324..43736409,+ to FFCP PHASE1:Hg19::chr1:43736324..43736409,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=128218 | |EntrezGene=128218 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28275 | |HGNC=28275 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=67bp_to_uc001cis.2_5end | |||
|cluster_id=chr1:43736324..43736409,+ | |||
|coexpression_cluster_id=C2585 | |||
|description=CAGE_peak_1_at_TMEM125_5end | |||
|id=chr1:43736324..43736409,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.14e-20!254;CL:0002076!7.58e-17!43;CL:0000223!9.18e-14!59;CL:0002368!2.26e-08!13;CL:0002251!1.05e-07!21;CL:0000039!1.24e-07!7;CL:0000586!1.24e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.28e-13;42!CL:0000039;5.75e-10;7!CL:0000586;5.75e-10;7!CL:0002251;5.36e-08;20!CL:0002322;4.38e-07;5!CL:0002368;8.39e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.09e-17,253;CL:0002076,5.14e-16,42;CL:0000223,1.28e-13,58;CL:0000039,6.26e-10,7;CL:0000586,6.26e-10,7;CL:0002251,5.21e-08,20;CL:0002322,4.62e-07,5;CL:0002368,8.12e-07,13 | |||
|ontology_enrichment_development_v019=UBERON:0006595;2.36e-08;86!CL:0000223;2.02e-07;58 | |||
|ontology_enrichment_disease=DOID:305!2.98e-15!106;DOID:0050687!9.35e-10!143;DOID:1749!2.38e-09!14;DOID:299!4.47e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;8.36e-12;25!DOID:1749;7.26e-11;14!DOID:305;2.22e-08;106!DOID:5093;7.31e-07;4!DOID:1612;7.31e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.14e-21,106;DOID:0050687,2.74e-15,143;DOID:299,7.90e-12,25;DOID:1749,7.65e-11,14;DOID:5093,7.36e-07,4;DOID:1612,7.36e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.77e-18!169;UBERON:0000925!1.77e-18!169;UBERON:0006595!1.77e-18!169;UBERON:0001007!1.28e-16!155;UBERON:0001555!1.28e-16!155;UBERON:0007026!1.28e-16!155;UBERON:0000464!8.71e-16!104;UBERON:0004921!1.07e-14!129;UBERON:0004185!1.07e-14!129;UBERON:0000466!1.38e-14!126;UBERON:0001004!5.07e-11!72;UBERON:0000077!6.61e-11!130;UBERON:0002553!3.28e-09!70;UBERON:0005911!6.09e-09!82;UBERON:0000062!8.15e-09!511;UBERON:0007023!2.85e-08!115;UBERON:0000161!2.91e-08!35;UBERON:0005153!3.85e-08!37;UBERON:0005177!3.97e-08!107;UBERON:0005156!7.41e-08!59;UBERON:0000990!7.41e-08!59;UBERON:0001041!7.48e-08!98;UBERON:0005178!1.06e-07!34;UBERON:0002224!1.06e-07!34;UBERON:0003135!1.07e-07!11;UBERON:0000065!1.95e-07!53;UBERON:0000058!2.27e-07!26;UBERON:0003133!2.41e-07!48;UBERON:0000064!2.51e-07!219;UBERON:0005181!2.67e-07!35;UBERON:0000166!7.99e-07!21;UBERON:0003101!8.41e-07!22;UBERON:0000079!8.41e-07!22;UBERON:0009569!8.88e-07!113;UBERON:0000481!9.88e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;4.64e-13;33!UBERON:0005409;4.68e-11;22!UBERON:0000160;1.95e-09;17!UBERON:0001555;2.03e-08;54!UBERON:0005178;3.69e-08;34!UBERON:0002224;3.69e-08;34!UBERON:0002048;4.84e-08;22!UBERON:0000117;4.84e-08;22!UBERON:0000171;4.84e-08;22!UBERON:0000170;4.84e-08;22!UBERON:0005181;1.20e-07;35!UBERON:0004807;1.38e-07;22!UBERON:0002294;2.67e-07;7!UBERON:0001173;2.67e-07;7!UBERON:0005911;3.40e-07;36!UBERON:0000974;3.53e-07;6!UBERON:0004175;4.00e-07;21!UBERON:0000058;8.68e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.04e-21,160;UBERON:0000925,7.04e-21,160;UBERON:0006595,7.04e-21,160;UBERON:0001007,1.57e-19,145;UBERON:0001555,1.57e-19,145;UBERON:0007026,1.57e-19,145;UBERON:0004921,1.09e-16,118;UBERON:0001004,1.58e-11,74;UBERON:0005911,1.94e-10,82;UBERON:0005177,1.32e-09,101;UBERON:0005178,1.46e-09,34;UBERON:0002224,1.46e-09,34;UBERON:0000160,1.90e-09,17;UBERON:0005409,2.77e-09,25;UBERON:0005181,3.84e-09,35;UBERON:0000915,7.90e-09,52;UBERON:0001041,9.46e-09,87;UBERON:0009569,2.02e-08,112;UBERON:0000161,4.52e-08,36;UBERON:0002048,4.58e-08,22;UBERON:0000117,4.58e-08,22;UBERON:0000171,4.58e-08,22;UBERON:0000170,4.58e-08,22;UBERON:0005597,4.58e-08,22;UBERON:0000118,4.58e-08,22;UBERON:0000065,6.41e-08,54;UBERON:0005153,7.99e-08,37;UBERON:0005156,1.18e-07,59;UBERON:0000990,1.18e-07,59;UBERON:0003133,4.77e-07,48;UBERON:0000166,4.95e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,8.84642171405432,43.9614735822629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,1.83884244895785,0.6024118375565,13.3111443660044,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,2.35762335895883,2.91436230634034,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.70565194428616,1.36373060295417,1.72082757233402,11.2215809639228,12.1927386855766,12.2003640012994,7.98190123618352,8.07426722802011,8.75945661781992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,14.3896473095443,0,0.548751427043128,4.49607013030478,4.62433273093502,0.277765335475589,0,0,0,0,0.117408694235822,0,0,0,17.3844967551041,19.7451817281821,0,0,0,0.93733833986777,0.335964256397719,0.992425680696705,0.179117045405697,0.290633938513962,0.383382679165211,0,0,0.207328115540772,0.144119953416961,0,0,0,0,6.84289784090821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91047486651302,0.802025881213139,18.6003597650511,0,0,0,9.47519187105565,5.00599691178696,0,1.46139224653261,1.68882606228601,0,0,0,0,0.541892875087706,0.501689773854853,8.6657932835313,31.5808883392915,0.895499018888713,0,0,0,0,0,3.91555844261345,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,5.78497203763423,3.65161127993702,0.382838137483752,21.344291760521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,2.21310859268678,0.670302275535787,6.53345909167936,3.67160823029439,0,1.68471475667626,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,13.2321716629757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.6325026824576,0,0,0,0,5.96861211844225,0.890894042497916,0.307160702099232,0,0.140669416410513,0,0,0,2.19172787076177,2.76283915531148,22.6739473068848,0.102268682502155,0,0,9.34630851932199,20.4084139130194,0,0.591860433821602,0,0,0,0,0,13.2818158153469,24.576259998931,4.34999745260876,4.55173793141999,22.6285748760562,18.674626859667,0.344743373241465,0,0,0,0,0,0,0.295547618953547,0,0,2.09135616417905,2.84715956464049,0,15.217217689612,9.69382559625539,23.5764797070758,0.638002319463839,0.641183153813036,1.5991043280559,0,0,0,0,0,0,0,0,0,11.5895293792995,12.4390702861868,0,16.9194528283346,14.860870836561,12.2206028986725,0,0,0,0.067401132980677,0,0,0,20.9361142257336,0,20.9129733510177,25.4080503702194,0,0,0,0,0,0,0,0,12.8074295713407,0,22.9098854602373,4.60564267847575,0.609414446062818,13.1045001181523,0,0,0,0,2.81268147816416,0,2.93774963014692,0,0,0.0633107959558787,21.1195493353587,4.08809983282822,20.0645815054991,0,14.8413129668729,0,0,0,0,7.77790314235425,0,0,0,0,0,0,0,0,0,0,0,0,13.7778510344304,0,0.223171457441873,0.134366944973453,0,33.7838253629616,0.0787831823072236,0,0,0,0,0,0.136203406111576,11.8957329864114,14.3041014061123,13.7095311549631,0,0,0.182248669974074,2.68347750079413,7.17131936422703,7.34364233889973,0,0,10.36342065525,0,0,0,0,0,0,0,0,0,0,0.58620893471233,0,0,0,0,31.0118609819336,5.65973286608782,7.3886023396843,7.87054205159671,0,0,0,7.021753835472,0,0,0,0,34.2377929825511,0,0.244052529803926,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,15.0031607584625,0,0,0,0,0,22.66048025055,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0.159633859057151,0,0.252071696221718,0.0691572524642179,0,0,14.1332714641477,2.94924308369351,2.56800037930351,5.31418064291556,0,0,0,1.27857558193737,0,65.6471769435798,3.40478702825849,0,10.4977821214102,0.270150338473579,0,0.206686796501184,0.0634158101939068,0.546974809018219,64.1461587222903,0.992422356778588,0,12.9040051915991,0,0,34.597039441488,14.7980424378343,4.61252324845722,0.115233987555779,0,0,0,0,5.89526430027966,3.21821680687107,0,32.5115709443995,6.39211104356647,0,0,0.500335809236594,0,0,0,0,0,0.17071847709395,0.691259661814092,33.9879613468019,0,0,17.3588690578281,34.5951371501516,0,0,4.80978356730507,14.133633640595,8.65617267374113,0,0,0,1.45713297917742,13.5684888808021,1.39265542612958,0,4.40489719951944,0,65.8197997950697,29.8663991877746,13.3321331907414,41.387922079814,0,72.1170234130975,0,0,0.4226557275834,0,0,0.0644578879735772,0,5.17806421956407,2.82315897372553,11.7152395366186,8.03370027071169,30.7348619881042,0,0,0.0679914901909147,0.436350690340377,19.5739930990698,0,0,0,0.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| ||
|short_description=p1@TMEM125 | |||
}} | }} |
Latest revision as of 04:14, 18 September 2015
Short description: | p1@TMEM125 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM125_5end |
Coexpression cluster: | C2585_somatostatinoma_parotid_small_pancreas_smallcell_Alveolar_salivary |
Association with transcript: | 67bp_to_uc001cis.2_5end |
EntrezGene: | TMEM125 |
HGNC: | 28275 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.09e-17 | 253 |
endo-epithelial cell | 5.14e-16 | 42 |
endodermal cell | 1.28e-13 | 58 |
germ line cell | 6.26e-10 | 7 |
germ cell | 6.26e-10 | 7 |
epithelial cell of alimentary canal | 5.21e-08 | 20 |
embryonic stem cell | 4.62e-07 | 5 |
respiratory epithelial cell | 8.12e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.04e-21 | 160 |
endoderm | 7.04e-21 | 160 |
presumptive endoderm | 7.04e-21 | 160 |
digestive system | 1.57e-19 | 145 |
digestive tract | 1.57e-19 | 145 |
primitive gut | 1.57e-19 | 145 |
subdivision of digestive tract | 1.09e-16 | 118 |
respiratory system | 1.58e-11 | 74 |
endo-epithelium | 1.94e-10 | 82 |
trunk region element | 1.32e-09 | 101 |
thoracic cavity element | 1.46e-09 | 34 |
thoracic cavity | 1.46e-09 | 34 |
intestine | 1.90e-09 | 17 |
gastrointestinal system | 2.77e-09 | 25 |
thoracic segment organ | 3.84e-09 | 35 |
thoracic segment of trunk | 7.90e-09 | 52 |
foregut | 9.46e-09 | 87 |
subdivision of trunk | 2.02e-08 | 112 |
orifice | 4.52e-08 | 36 |
lung | 4.58e-08 | 22 |
respiratory tube | 4.58e-08 | 22 |
respiration organ | 4.58e-08 | 22 |
pair of lungs | 4.58e-08 | 22 |
lung primordium | 4.58e-08 | 22 |
lung bud | 4.58e-08 | 22 |
respiratory tract | 6.41e-08 | 54 |
epithelial bud | 7.99e-08 | 37 |
reproductive structure | 1.18e-07 | 59 |
reproductive system | 1.18e-07 | 59 |
reproductive organ | 4.77e-07 | 48 |
oral opening | 4.95e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.14e-21 | 106 |
cell type cancer | 2.74e-15 | 143 |
adenocarcinoma | 7.90e-12 | 25 |
squamous cell carcinoma | 7.65e-11 | 14 |
thoracic cancer | 7.36e-07 | 4 |
breast cancer | 7.36e-07 | 4 |