FFCP PHASE1:Hg19::chr2:204571269..204571283,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:204571269..204571283,+ to FFCP PHASE1:Hg19::chr2:204571269..204571283,+: NSchange) |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=940 | |EntrezGene=940 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1653 | |HGNC=1653 | ||
|TSSclassifier=strong | |||
|UniProt=P10747 | |UniProt=P10747 | ||
|association_with_transcript=0bp_to_ENST00000324106_5end | |||
|cluster_id=chr2:204571269..204571283,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_CD28_5end | |||
|id=chr2:204571269..204571283,+ | |||
|ontology_enrichment_celltype=CL:0000791!5.42e-27!18;CL:0000789!5.42e-27!18;CL:0002420!5.42e-27!18;CL:0002419!5.42e-27!18;CL:0000790!5.42e-27!18;CL:0000084!1.40e-22!25;CL:0000827!1.40e-22!25;CL:0000625!5.41e-19!11;CL:0000838!7.63e-15!52;CL:0000542!2.02e-14!53;CL:0000051!2.02e-14!53;CL:0000624!1.52e-11!6;CL:0002087!7.68e-11!119;CL:0000738!2.66e-10!140;CL:0002031!7.30e-08!124;CL:0000037!1.88e-07!172;CL:0000566!1.88e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.47e-42;18!CL:0000789;2.47e-42;18!CL:0002419;2.47e-42;18!CL:0000084;6.28e-37;25!CL:0000625;1.77e-27;11!CL:0000624;2.68e-19;6!CL:0000542;7.86e-11;53!CL:0000898;1.15e-10;3!CL:0002619;2.22e-09;3!CL:0000226;3.56e-09;3!CL:0000842;3.56e-09;3!CL:0000815;1.77e-07;2!CL:0000792;1.77e-07;2!CL:0002677;1.77e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.91e-42,18;CL:0000789,1.91e-42,18;CL:0002420,1.91e-42,18;CL:0002419,1.91e-42,18;CL:0000790,1.91e-42,18;CL:0000084,5.35e-37,25;CL:0000827,5.35e-37,25;CL:0000625,1.26e-27,11;CL:0000838,2.04e-23,52;CL:0000542,7.27e-23,53;CL:0000051,7.27e-23,53;CL:0000624,2.91e-19,6;CL:0002087,5.67e-16,115;CL:0000738,1.77e-13,136;CL:0002031,1.29e-11,120;CL:0000898,1.08e-10,3;CL:0000037,1.63e-09,168;CL:0002619,2.54e-09,3;CL:0000226,3.52e-09,3;CL:0000842,3.52e-09,3;CL:0000988,1.14e-08,177;CL:0000815,1.66e-07,2;CL:0000792,1.66e-07,2;CL:0002677,1.66e-07,2;CL:0002032,4.41e-07,161;CL:0000837,4.41e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;2.47e-42;18!CL:0000051;7.86e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.99e-16!115;UBERON:0000178!1.47e-12!15;UBERON:0000179!1.47e-12!15;UBERON:0000463!1.47e-12!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.05e-22;15!UBERON:0000179;3.05e-22;15!UBERON:0000463;3.05e-22;15!UBERON:0002390;2.31e-16;32!UBERON:0002193;9.52e-12;42!UBERON:0002370;4.41e-07;2!UBERON:0005058;4.41e-07;2!UBERON:0009113;4.41e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.37e-22,15;UBERON:0000179,3.37e-22,15;UBERON:0000463,3.37e-22,15;UBERON:0002193,9.31e-09,108;UBERON:0002390,3.86e-08,98;UBERON:0003061,3.86e-08,98;UBERON:0002370,8.59e-08,4;UBERON:0005058,8.59e-08,4;UBERON:0009113,8.59e-08,4;UBERON:0003295,8.59e-08,4;UBERON:0005562,8.59e-08,4;UBERON:0004177,3.09e-07,7;UBERON:0005057,3.09e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0.868043482863407,2.46307021663917,1.29557466407592,1.28787783817093,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.34406609193516,5.10913991573914,5.34563897398724,10.0311897234407,4.56291173287027,8.5220605032252,1.94826728407911,8.0215528957325,5.89211814949674,5.31681347000691,6.22848886659536,10.247305578054,10.7949258474699,3.78207180588455,2.76350017785848,6.66547097190621,8.74890722656157,10.4340922954988,6.27213142829861,8.95143807310773,9.96373283364995,7.21617635513523,6.32549230048757,3.82278497188916,5.85975108470777,3.8018081777935,7.82990619204418,6.01537072425766,6.24653632761729,7.81364931745256,8.21127996921047,1.61285394579786,0.267440195783507,1.44824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0.132957960518865,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6487785964879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23108503043699,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.52031382288914,0,0,0,0,0,0,0,0,1.57624608161542,1.2937654491571,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,1.07857100409308,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.659006605437454,0,0,0,0,2.02979043692868,3.82318603571188,3.41788312304498,2.1440859791201,6.17043409629291,1.29694662238543,2.70015718619057,4.75875105776562,0,0,0,0,0,1.20941133692304,1.4348364545594,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,1.02555725490326,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.398495976502139,2.48655523978033,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0.265372693510018,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,1.18542664892098,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0.157204305099666,0,2.97699613087171,0.395223263795889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0.535701835878287,0,0,0.455324382702595,1.06442844195167,0,0,0.0679697329768317,0,0,0,0.470958557103084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0.205325613712494,1.1598144313382,0,0,0,0,0,0,0,0,0.218559560503957,0,0.490296643507811,0,0,0,0.4226557275834,0,0.375935671919414,1.09578409555081,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0,2.97108985245628,2.11054028605917,0,0,0.202117188958219,0,0,1.41439311330634,0.215166616178029,0.332660356546013,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0.868043482863407,2.46307021663917,1.29557466407592,1.28787783817093,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.34406609193516,5.10913991573914,5.34563897398724,10.0311897234407,4.56291173287027,8.5220605032252,1.94826728407911,8.0215528957325,5.89211814949674,5.31681347000691,6.22848886659536,10.247305578054,10.7949258474699,3.78207180588455,2.76350017785848,6.66547097190621,8.74890722656157,10.4340922954988,6.27213142829861,8.95143807310773,9.96373283364995,7.21617635513523,6.32549230048757,3.82278497188916,5.85975108470777,3.8018081777935,7.82990619204418,6.01537072425766,6.24653632761729,7.81364931745256,8.21127996921047,1.61285394579786,0.267440195783507,1.44824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0.132957960518865,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6487785964879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23108503043699,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.52031382288914,0,0,0,0,0,0,0,0,1.57624608161542,1.2937654491571,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,1.07857100409308,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.659006605437454,0,0,0,0,2.02979043692868,3.82318603571188,3.41788312304498,2.1440859791201,6.17043409629291,1.29694662238543,2.70015718619057,4.75875105776562,0,0,0,0,0,1.20941133692304,1.4348364545594,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,1.02555725490326,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.398495976502139,2.48655523978033,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0.265372693510018,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,1.18542664892098,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0.157204305099666,0,2.97699613087171,0.395223263795889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0.535701835878287,0,0,0.455324382702595,1.06442844195167,0,0,0.0679697329768317,0,0,0,0.470958557103084,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0.205325613712494,1.1598144313382,0,0,0,0,0,0,0,0,0.218559560503957,0,0.490296643507811,0,0,0,0.4226557275834,0,0.375935671919414,1.09578409555081,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0,2.97108985245628,2.11054028605917,0,0,0.202117188958219,0,0,1.41439311330634,0.215166616178029,0.332660356546013,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.805095174364105,0 | ||
|short_description=p4@CD28 | |||
}} | }} |
Latest revision as of 16:00, 19 September 2015
Short description: | p4@CD28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CD28_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000324106_5end |
EntrezGene: | CD28 |
HGNC: | 1653 |
UniProt: | P10747 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.91e-42 | 18 |
alpha-beta T cell | 1.91e-42 | 18 |
immature T cell | 1.91e-42 | 18 |
mature T cell | 1.91e-42 | 18 |
immature alpha-beta T cell | 1.91e-42 | 18 |
T cell | 5.35e-37 | 25 |
pro-T cell | 5.35e-37 | 25 |
CD8-positive, alpha-beta T cell | 1.26e-27 | 11 |
lymphoid lineage restricted progenitor cell | 2.04e-23 | 52 |
lymphocyte | 7.27e-23 | 53 |
common lymphoid progenitor | 7.27e-23 | 53 |
CD4-positive, alpha-beta T cell | 2.91e-19 | 6 |
nongranular leukocyte | 5.67e-16 | 115 |
leukocyte | 1.77e-13 | 136 |
hematopoietic lineage restricted progenitor cell | 1.29e-11 | 120 |
naive T cell | 1.08e-10 | 3 |
hematopoietic stem cell | 1.63e-09 | 168 |
adult endothelial progenitor cell | 2.54e-09 | 3 |
single nucleate cell | 3.52e-09 | 3 |
mononuclear cell | 3.52e-09 | 3 |
hematopoietic cell | 1.14e-08 | 177 |
regulatory T cell | 1.66e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.66e-07 | 2 |
naive regulatory T cell | 1.66e-07 | 2 |
hematopoietic oligopotent progenitor cell | 4.41e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.41e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 3.37e-22 | 15 |
haemolymphatic fluid | 3.37e-22 | 15 |
organism substance | 3.37e-22 | 15 |
hemolymphoid system | 9.31e-09 | 108 |
hematopoietic system | 3.86e-08 | 98 |
blood island | 3.86e-08 | 98 |
thymus | 8.59e-08 | 4 |
hemolymphoid system gland | 8.59e-08 | 4 |
thymic region | 8.59e-08 | 4 |
pharyngeal gland | 8.59e-08 | 4 |
thymus primordium | 8.59e-08 | 4 |
hemopoietic organ | 3.09e-07 | 7 |
immune organ | 3.09e-07 | 7 |