FFCP PHASE1:Hg19::chr2:219433630..219433644,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:219433630..219433644,+ to FFCP PHASE1:Hg19::chr2:219433630..219433644,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9125 | |EntrezGene=9125 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10445 | |HGNC=10445 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-9bp_to_ENST00000489687_5end | |||
|cluster_id=chr2:219433630..219433644,+ | |||
|coexpression_cluster_id=C4185 | |||
|description=CAGE_peak_4_at_RQCD1_5end | |||
|id=chr2:219433630..219433644,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.96e-17!239;DOID:162!2.71e-17!235;DOID:0050687!6.06e-10!143;DOID:0050686!7.62e-10!137;DOID:305!5.09e-08!106;DOID:2531!2.18e-07!51;DOID:0060083!2.18e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.37e-16,239;DOID:162,3.11e-16,235;DOID:0050686,1.09e-09,137;DOID:0050687,4.10e-09,143;DOID:2531,7.65e-08,51;DOID:0060083,7.65e-08,51;DOID:305,1.92e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.48e-11!94;UBERON:0001016!2.48e-11!94;UBERON:0001017!5.49e-11!82;UBERON:0005743!5.71e-11!86;UBERON:0001049!4.13e-10!57;UBERON:0005068!4.13e-10!57;UBERON:0006241!4.13e-10!57;UBERON:0007135!4.13e-10!57;UBERON:0000955!1.24e-09!69;UBERON:0006238!1.24e-09!69;UBERON:0002616!2.06e-09!59;UBERON:0003075!8.46e-09!86;UBERON:0007284!8.46e-09!86;UBERON:0002780!1.17e-08!41;UBERON:0001890!1.17e-08!41;UBERON:0006240!1.17e-08!41;UBERON:0002346!2.67e-08!90;UBERON:0003080!6.21e-08!42;UBERON:0003056!7.01e-08!61;UBERON:0002020!9.17e-08!34;UBERON:0003528!9.17e-08!34;UBERON:0001893!2.61e-07!34;UBERON:0002791!3.58e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;2.35e-07;34!UBERON:0002020;2.35e-07;34!UBERON:0002791;3.99e-07;32!UBERON:0002780;5.11e-07;41!UBERON:0001890;5.11e-07;41!UBERON:0000073;6.99e-07;53!UBERON:0002616;6.99e-07;53!UBERON:0001893;7.21e-07;34!UBERON:0001869;9.20e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.82e-12,89;UBERON:0001017,8.70e-12,81;UBERON:0001049,2.38e-11,56;UBERON:0005068,2.38e-11,56;UBERON:0006241,2.38e-11,56;UBERON:0007135,2.38e-11,56;UBERON:0000073,4.45e-11,53;UBERON:0002616,4.45e-11,53;UBERON:0000955,1.48e-10,68;UBERON:0006238,1.48e-10,68;UBERON:0003075,9.36e-10,82;UBERON:0007284,9.36e-10,82;UBERON:0002346,3.87e-09,86;UBERON:0002780,7.34e-09,41;UBERON:0001890,7.34e-09,41;UBERON:0003080,7.34e-09,41;UBERON:0006240,7.34e-09,41;UBERON:0003056,2.92e-08,61;UBERON:0003528,3.54e-08,34;UBERON:0002020,3.54e-08,34;UBERON:0011216,1.01e-07,223;UBERON:0001893,1.11e-07,34;UBERON:0002791,2.72e-07,32;UBERON:0010371,2.99e-07,104;UBERON:0001869,5.10e-07,32 | |||
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| ||
|short_description=p4@RQCD1 | |||
}} | }} |
Latest revision as of 17:50, 24 September 2015
Short description: | p4@RQCD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RQCD1_5end |
Coexpression cluster: | C4185_teratocarcinoma_iPS_H9_HES3GFP_NK_diffuse_rhabdomyosarcoma |
Association with transcript: | -9bp_to_ENST00000489687_5end |
EntrezGene: | RQCD1 |
HGNC: | 10445 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 2.82e-12 | 89 |
central nervous system | 8.70e-12 | 81 |
neural tube | 2.38e-11 | 56 |
neural rod | 2.38e-11 | 56 |
future spinal cord | 2.38e-11 | 56 |
neural keel | 2.38e-11 | 56 |
regional part of nervous system | 4.45e-11 | 53 |
regional part of brain | 4.45e-11 | 53 |
brain | 1.48e-10 | 68 |
future brain | 1.48e-10 | 68 |
neural plate | 9.36e-10 | 82 |
presumptive neural plate | 9.36e-10 | 82 |
neurectoderm | 3.87e-09 | 86 |
regional part of forebrain | 7.34e-09 | 41 |
forebrain | 7.34e-09 | 41 |
anterior neural tube | 7.34e-09 | 41 |
future forebrain | 7.34e-09 | 41 |
pre-chordal neural plate | 2.92e-08 | 61 |
brain grey matter | 3.54e-08 | 34 |
gray matter | 3.54e-08 | 34 |
organ system subdivision | 1.01e-07 | 223 |
telencephalon | 1.11e-07 | 34 |
regional part of telencephalon | 2.72e-07 | 32 |
ecto-epithelium | 2.99e-07 | 104 |
cerebral hemisphere | 5.10e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.37e-16 | 239 |
cancer | 3.11e-16 | 235 |
organ system cancer | 1.09e-09 | 137 |
cell type cancer | 4.10e-09 | 143 |
hematologic cancer | 7.65e-08 | 51 |
immune system cancer | 7.65e-08 | 51 |
carcinoma | 1.92e-07 | 106 |