FFCP PHASE1:Hg19::chr2:222436988..222437031,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:222436988..222437031,- to FFCP PHASE1:Hg19::chr2:222436988..222437031,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2043 | |EntrezGene=2043 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3388 | |HGNC=3388 | ||
|TSSclassifier=strong | |||
|UniProt=P54764,E9PG71,F8WBU0,C9JFX5,Q58F15 | |UniProt=P54764,E9PG71,F8WBU0,C9JFX5,Q58F15 | ||
|association_with_transcript=0bp_to_ENST00000281821,ENST00000392071,ENST00000409854,ENST00000415749,ENST00000443796,NM_004438,uc002vmq.2,uc002vmr.2,uc010zlm.1_5end | |||
|cluster_id=chr2:222436988..222437031,- | |||
|description=CAGE_peak_1_at_EPHA4_5end | |||
|id=chr2:222436988..222437031,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;7.63e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.03e-17!82;UBERON:0007023!6.99e-17!115;UBERON:0005743!1.79e-16!86;UBERON:0001869!4.59e-16!32;UBERON:0001893!8.89e-16!34;UBERON:0001049!1.15e-15!57;UBERON:0005068!1.15e-15!57;UBERON:0006241!1.15e-15!57;UBERON:0007135!1.15e-15!57;UBERON:0002791!3.90e-15!33;UBERON:0002619!5.67e-15!22;UBERON:0002020!7.18e-15!34;UBERON:0003528!7.18e-15!34;UBERON:0000955!1.11e-14!69;UBERON:0006238!1.11e-14!69;UBERON:0002780!1.94e-14!41;UBERON:0001890!1.94e-14!41;UBERON:0006240!1.94e-14!41;UBERON:0000073!2.15e-14!94;UBERON:0001016!2.15e-14!94;UBERON:0003080!2.46e-14!42;UBERON:0000956!7.70e-14!25;UBERON:0000203!7.70e-14!25;UBERON:0001950!1.06e-13!20;UBERON:0002616!2.35e-13!59;UBERON:0002346!6.41e-13!90;UBERON:0000924!1.12e-11!173;UBERON:0006601!1.12e-11!173;UBERON:0003075!2.20e-11!86;UBERON:0007284!2.20e-11!86;UBERON:0004121!1.94e-10!169;UBERON:0000153!2.15e-10!129;UBERON:0007811!2.15e-10!129;UBERON:0000033!4.74e-10!123;UBERON:0003056!1.18e-09!61;UBERON:0000475!3.24e-08!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.46e-15;22!UBERON:0001869;8.98e-15;32!UBERON:0001893;3.42e-14;34!UBERON:0000956;4.96e-14;25!UBERON:0000203;4.96e-14;25!UBERON:0001950;6.83e-14;20!UBERON:0002791;7.19e-14;32!UBERON:0003528;1.69e-13;34!UBERON:0002020;1.69e-13;34!UBERON:0002780;9.24e-11;41!UBERON:0001890;9.24e-11;41!UBERON:0000073;2.42e-09;53!UBERON:0002616;2.42e-09;53!UBERON:0000955;1.05e-07;68!UBERON:0001017;2.44e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.60e-17,81;UBERON:0007023,7.03e-17,114;UBERON:0001869,2.58e-16,32;UBERON:0001049,4.31e-16,56;UBERON:0005068,4.31e-16,56;UBERON:0006241,4.31e-16,56;UBERON:0007135,4.31e-16,56;UBERON:0001893,5.06e-16,34;UBERON:0000073,7.06e-16,53;UBERON:0002616,7.06e-16,53;UBERON:0002619,3.33e-15,22;UBERON:0002791,3.64e-15,32;UBERON:0003528,4.24e-15,34;UBERON:0002020,4.24e-15,34;UBERON:0001016,5.07e-15,89;UBERON:0002780,8.66e-15,41;UBERON:0001890,8.66e-15,41;UBERON:0003080,8.66e-15,41;UBERON:0006240,8.66e-15,41;UBERON:0000955,9.67e-15,68;UBERON:0006238,9.67e-15,68;UBERON:0000956,4.73e-14,25;UBERON:0000203,4.73e-14,25;UBERON:0001950,6.53e-14,20;UBERON:0002346,4.17e-13,86;UBERON:0004121,5.09e-12,171;UBERON:0000924,5.09e-12,171;UBERON:0006601,5.09e-12,171;UBERON:0003075,1.59e-11,82;UBERON:0007284,1.59e-11,82;UBERON:0010371,1.10e-09,104;UBERON:0010314,1.45e-09,132;UBERON:0003056,2.47e-09,61 | |||
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| ||
|short_description=p1@EPHA4 | |||
}} | }} |
Latest revision as of 23:02, 24 September 2015
Short description: | p1@EPHA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EPHA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000281821, ENST00000392071, ENST00000409854, ENST00000415749, ENST00000443796, NM_004438, uc002vmq.2, uc002vmr.2, uc010zlm.1_5end |
EntrezGene: | EPHA4 |
HGNC: | 3388 |
UniProt: | P54764E9PG71F8WBU0C9JFX5Q58F15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.60e-17 | 81 |
adult organism | 7.03e-17 | 114 |
cerebral hemisphere | 2.58e-16 | 32 |
neural tube | 4.31e-16 | 56 |
neural rod | 4.31e-16 | 56 |
future spinal cord | 4.31e-16 | 56 |
neural keel | 4.31e-16 | 56 |
telencephalon | 5.06e-16 | 34 |
regional part of nervous system | 7.06e-16 | 53 |
regional part of brain | 7.06e-16 | 53 |
regional part of cerebral cortex | 3.33e-15 | 22 |
regional part of telencephalon | 3.64e-15 | 32 |
brain grey matter | 4.24e-15 | 34 |
gray matter | 4.24e-15 | 34 |
nervous system | 5.07e-15 | 89 |
regional part of forebrain | 8.66e-15 | 41 |
forebrain | 8.66e-15 | 41 |
anterior neural tube | 8.66e-15 | 41 |
future forebrain | 8.66e-15 | 41 |
brain | 9.67e-15 | 68 |
future brain | 9.67e-15 | 68 |
cerebral cortex | 4.73e-14 | 25 |
pallium | 4.73e-14 | 25 |
neocortex | 6.53e-14 | 20 |
neurectoderm | 4.17e-13 | 86 |
ectoderm-derived structure | 5.09e-12 | 171 |
ectoderm | 5.09e-12 | 171 |
presumptive ectoderm | 5.09e-12 | 171 |
neural plate | 1.59e-11 | 82 |
presumptive neural plate | 1.59e-11 | 82 |
ecto-epithelium | 1.10e-09 | 104 |
structure with developmental contribution from neural crest | 1.45e-09 | 132 |
pre-chordal neural plate | 2.47e-09 | 61 |