FFCP PHASE1:Hg19::chr3:10362736..10362809,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:10362736..10362809,- to FFCP PHASE1:Hg19::chr3:10362736..10362809,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6396 | |EntrezGene=6396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10697 | |HGNC=10697 | ||
|TSSclassifier=strong | |||
|UniProt=P55735,A8MTC1,A8MTA5,A8MWR8,A8MXL6,C9J0S2,E7ERC8,C9JIB6,C9JBJ5 | |UniProt=P55735,A8MTC1,A8MTA5,A8MWR8,A8MXL6,C9J0S2,E7ERC8,C9JIB6,C9JBJ5 | ||
|association_with_transcript=0bp_to_ENST00000337354,ENST00000383801,ENST00000397099,ENST00000397101,ENST00000397102,ENST00000397105,ENST00000397117,ENST00000428626,ENST00000431352,ENST00000432213,ENST00000445064,uc003bvq.1_5end | |||
|cluster_id=chr3:10362736..10362809,- | |||
|coexpression_cluster_id=C562 | |||
|description=CAGE_peak_1_at_SEC13_5end | |||
|id=chr3:10362736..10362809,- | |||
|ontology_enrichment_celltype=CL:0000548!2.57e-43!679;CL:0000004!2.57e-43!679;CL:0000255!2.57e-43!679;CL:0000012!4.53e-43!682;CL:0000144!4.00e-41!625;CL:0002371!1.82e-37!591;CL:0000055!9.52e-37!180;CL:0000222!2.77e-28!119;CL:0000003!5.93e-25!722;CL:0000183!3.64e-24!59;CL:0002321!5.39e-23!248;CL:0000220!5.41e-23!246;CL:0000680!1.91e-22!57;CL:0000056!1.91e-22!57;CL:0000355!1.91e-22!57;CL:0000187!7.58e-22!54;CL:0000192!3.21e-20!42;CL:0000514!3.21e-20!42;CL:0000393!4.60e-20!60;CL:0000211!4.60e-20!60;CL:0000057!5.81e-18!75;CL:0000034!5.35e-16!444;CL:0000723!5.40e-16!436;CL:0000048!8.47e-16!430;CL:0000359!8.49e-16!32;CL:0000063!2.53e-12!578;CL:0002078!3.61e-08!44;CL:0000115!9.43e-08!35;CL:0000213!1.07e-07!57;CL:0000215!1.07e-07!57;CL:0002139!7.37e-07!24;CL:0000071!7.95e-07!18;CL:0002546!7.95e-07!18;CL:0002620!9.96e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.52e-15;32!CL:0000192;3.71e-14;43!CL:0000187;2.36e-12;55!CL:0000393;2.46e-10;61!CL:0000211;2.46e-10;61!CL:0000134;9.33e-09;55!CL:0000057;5.67e-08;73!CL:0000723;6.25e-08;61!CL:0000048;1.79e-07;58!CL:0002320;5.72e-07;188!CL:0000115;5.84e-07;36!CL:0002139;7.31e-07;24!CL:0000071;8.09e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.34e-28,121;CL:0002321,2.33e-23,250;CL:0000680,3.24e-22,58;CL:0000056,3.24e-22,58;CL:0000355,3.24e-22,58;CL:0000187,1.31e-21,55;CL:0000192,6.35e-20,43;CL:0000514,6.35e-20,43;CL:0000393,7.03e-20,61;CL:0000211,7.03e-20,61;CL:0000057,4.61e-18,76;CL:0000359,8.49e-16,32;CL:0000034,9.81e-16,441;CL:0000723,9.83e-16,433;CL:0000048,1.53e-15,427;CL:0002078,1.66e-08,45;CL:0000115,4.21e-08,36;CL:0000213,5.22e-08,58;CL:0000215,5.22e-08,58;CL:0002139,7.37e-07,24;CL:0000071,7.95e-07,18;CL:0002546,7.95e-07,18;CL:0002620,9.96e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;3.71e-14;43!CL:0000355;7.15e-12;58!CL:0000222;5.78e-08;121!CL:0002546;8.09e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!4.09e-25!143;UBERON:0000914!2.12e-24!83;UBERON:0002329!2.12e-24!83;UBERON:0003077!2.12e-24!83;UBERON:0003059!2.12e-24!83;UBERON:0007282!2.12e-24!83;UBERON:0009618!2.12e-24!83;UBERON:0007285!2.12e-24!83;UBERON:0000486!5.70e-24!82;UBERON:0004290!1.51e-23!70;UBERON:0002049!6.21e-22!79;UBERON:0007798!6.21e-22!79;UBERON:0000490!2.37e-21!138;UBERON:0003914!1.39e-20!118;UBERON:0001134!2.92e-20!61;UBERON:0002036!2.92e-20!61;UBERON:0003082!2.92e-20!61;UBERON:0002385!3.42e-19!63;UBERON:0001015!3.42e-19!63;UBERON:0000383!3.42e-19!63;UBERON:0004872!2.86e-18!84;UBERON:0000055!2.88e-18!69;UBERON:0001637!1.02e-17!42;UBERON:0003509!1.02e-17!42;UBERON:0004572!1.02e-17!42;UBERON:0001981!1.76e-17!60;UBERON:0007500!1.76e-17!60;UBERON:0004537!1.76e-17!60;UBERON:0006965!1.76e-17!60;UBERON:0002100!9.70e-17!216;UBERON:0004535!9.54e-15!110;UBERON:0001009!6.99e-14!113;UBERON:0004573!2.10e-13!33;UBERON:0004571!2.10e-13!33;UBERON:0003104!4.47e-13!238;UBERON:0009142!4.47e-13!238;UBERON:0000926!1.53e-11!448;UBERON:0004120!1.53e-11!448;UBERON:0006603!1.53e-11!448;UBERON:0000119!4.84e-08!312;UBERON:0000483!1.21e-07!309;UBERON:0003102!1.47e-07!95;UBERON:0000947!2.00e-07!21;UBERON:0010191!2.00e-07!21;UBERON:0002199!2.40e-07!45;UBERON:0002416!2.40e-07!45;UBERON:0001986!7.95e-07!18;UBERON:0004638!7.95e-07!18;UBERON:0004852!7.95e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.44e-12;42!UBERON:0003509;1.44e-12;42!UBERON:0004572;1.44e-12;42!UBERON:0004573;3.86e-12;33!UBERON:0004571;3.86e-12;33!UBERON:0007500;1.49e-11;56!UBERON:0001981;1.49e-11;56!UBERON:0004537;1.49e-11;56!UBERON:0003914;3.92e-10;74!UBERON:0002049;5.44e-10;75!UBERON:0007798;5.44e-10;75!UBERON:0000055;7.25e-10;65!UBERON:0000947;2.12e-07;21!UBERON:0010191;2.12e-07;21!UBERON:0004638;8.09e-07;18!UBERON:0001986;8.09e-07;18!UBERON:0004852;8.09e-07;18 | |||
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| ||
|short_description=p1@SEC13 | |||
}} | }} |
Latest revision as of 08:50, 19 September 2015
Short description: | p1@SEC13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEC13_5end |
Coexpression cluster: | C562_Smooth_Fibroblast_Preadipocyte_Hepatic_Alveolar_Adipocyte_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000337354, ENST00000383801, ENST00000397099, ENST00000397101, ENST00000397102, ENST00000397105, ENST00000397117, ENST00000428626, ENST00000431352, ENST00000432213, ENST00000445064, uc003bvq.1_5end |
EntrezGene: | SEC13 |
HGNC: | 10697 |
UniProt: | P55735A8MTC1A8MTA5A8MWR8A8MXL6C9J0S2E7ERC8C9JIB6C9JBJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.34e-28 | 121 |
embryonic cell | 2.33e-23 | 250 |
muscle precursor cell | 3.24e-22 | 58 |
myoblast | 3.24e-22 | 58 |
multi-potent skeletal muscle stem cell | 3.24e-22 | 58 |
muscle cell | 1.31e-21 | 55 |
smooth muscle cell | 6.35e-20 | 43 |
smooth muscle myoblast | 6.35e-20 | 43 |
electrically responsive cell | 7.03e-20 | 61 |
electrically active cell | 7.03e-20 | 61 |
fibroblast | 4.61e-18 | 76 |
vascular associated smooth muscle cell | 8.49e-16 | 32 |
stem cell | 9.81e-16 | 441 |
somatic stem cell | 9.83e-16 | 433 |
multi fate stem cell | 1.53e-15 | 427 |
meso-epithelial cell | 1.66e-08 | 45 |
endothelial cell | 4.21e-08 | 36 |
lining cell | 5.22e-08 | 58 |
barrier cell | 5.22e-08 | 58 |
endothelial cell of vascular tree | 7.37e-07 | 24 |
blood vessel endothelial cell | 7.95e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.95e-07 | 18 |
skin fibroblast | 9.96e-07 | 23 |