FFCP PHASE1:Hg19::chr3:16327887..16327901,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:16327887..16327901,+ to FFCP PHASE1:Hg19::chr3:16327887..16327901,+: NSchange) |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=92106 | |EntrezGene=92106 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=25128 | |HGNC=25128 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_AL832787_5end | |||
|cluster_id=chr3:16327887..16327901,+ | |||
|coexpression_cluster_id=C23 | |||
|description=CAGE_peak_3_at_OXNAD1_5end | |||
|id=chr3:16327887..16327901,+ | |||
|ontology_enrichment_celltype=CL:0000084!8.44e-26!25;CL:0000827!8.44e-26!25;CL:0000791!2.23e-24!18;CL:0000789!2.23e-24!18;CL:0002420!2.23e-24!18;CL:0002419!2.23e-24!18;CL:0000790!2.23e-24!18;CL:0000738!2.27e-24!140;CL:0000838!2.95e-21!52;CL:0000542!1.25e-20!53;CL:0000051!1.25e-20!53;CL:0002087!7.14e-17!119;CL:0000037!1.25e-16!172;CL:0000566!1.25e-16!172;CL:0000625!2.74e-15!11;CL:0002031!6.62e-15!124;CL:0000988!1.32e-14!182;CL:0002032!5.69e-14!165;CL:0000837!5.69e-14!165;CL:0000624!1.27e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.25e-46;18!CL:0000789;3.25e-46;18!CL:0002419;3.25e-46;18!CL:0000084;1.74e-43;25!CL:0000625;2.40e-28;11!CL:0000624;2.83e-17;6!CL:0000542;1.82e-14;53!CL:0000094;7.40e-11;8!CL:0000226;2.10e-09;3!CL:0000842;2.10e-09;3!CL:0000898;2.48e-09;3!CL:0000623;2.92e-09;3!CL:0000767;1.55e-08;3!CL:0000081;1.06e-07;11!CL:0000815;9.69e-07;2!CL:0000792;9.69e-07;2!CL:0002677;9.69e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.54e-46,18;CL:0000789,3.54e-46,18;CL:0002420,3.54e-46,18;CL:0002419,3.54e-46,18;CL:0000790,3.54e-46,18;CL:0000084,2.15e-43,25;CL:0000827,2.15e-43,25;CL:0000625,2.41e-28,11;CL:0000838,3.32e-26,52;CL:0000542,1.42e-25,53;CL:0000051,1.42e-25,53;CL:0000738,1.98e-24,136;CL:0000037,1.28e-17,168;CL:0000624,2.87e-17,6;CL:0000988,3.70e-16,177;CL:0002087,3.16e-15,115;CL:0002032,1.95e-13,161;CL:0000837,1.95e-13,161;CL:0002031,6.77e-11,120;CL:0000094,7.01e-11,8;CL:0000226,2.19e-09,3;CL:0000842,2.19e-09,3;CL:0000898,2.51e-09,3;CL:0000623,2.96e-09,3;CL:0000825,2.96e-09,3;CL:0000767,1.45e-08,3;CL:0000081,1.02e-07,11;CL:0000815,9.83e-07,2;CL:0000792,9.83e-07,2;CL:0002677,9.83e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.25e-46;18!CL:0000051;1.82e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.38e-15!115;UBERON:0000178!2.19e-11!15;UBERON:0000179!2.19e-11!15;UBERON:0000463!2.19e-11!15;UBERON:0002390!6.73e-08!102;UBERON:0003061!6.73e-08!102;UBERON:0002193!1.71e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.53e-22;15!UBERON:0000179;6.53e-22;15!UBERON:0000463;6.53e-22;15!UBERON:0002390;1.24e-12;32!UBERON:0002193;1.45e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.11e-22,15;UBERON:0000179,6.11e-22,15;UBERON:0000463,6.11e-22,15;UBERON:0002370,2.93e-10,4;UBERON:0005058,2.93e-10,4;UBERON:0009113,2.93e-10,4;UBERON:0003295,2.93e-10,4;UBERON:0005562,2.93e-10,4;UBERON:0004177,1.22e-08,7;UBERON:0005057,1.22e-08,7;UBERON:0003351,7.69e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.410502947249729,0.236132343941038,4.72037132218685,10.3633937486247,4.4896675761662,0,0,0,0,0,0,3.87796785972314,5.41470008169383,2.82114131930607,0.895661896959697,2.91504299417082,0.77272670290256,0.145398238779565,0,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0.645484683583826,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,1.76171156811282,0.764546456250458,0,4.48406850385229,0,34.0307902296931,25.5456995786957,42.3539087938989,2.17342444007882,26.3997035973208,26.5130771211451,17.534405556712,1.11410456885174,15.9087190036412,26.8056012446182,9.47813523177554,2.81800903396485,0.780356085359269,5.59088875652499,4.14525026678773,10.7227141721969,39.8890854905943,48.4248898842381,18.8163942848958,3.96582699441482,24.142891096921,27.1465681931278,18.2174178254042,5.41561204350964,9.11516835398986,6.65316431113862,11.293133930833,15.2304067273758,11.2437653897111,7.57687206540854,7.39015197228942,40.1197419017218,21.3952156626806,23.1719046212478,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.196468613246569,0,0,0,0,0.132957960518865,0.715471872916026,1.71598473234038,2.22874500797739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0.352193736052904,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02629888782524,27.3872756680679,21.7783850608112,10.1390998661001,0,0,0,0,0,0,2.99161459204025,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.4625801012933,18.1199928687638,23.1598800433474,0,0,0,0,0,0.280660094433074,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0.670302275535787,0,0.0941438007767792,0,0,0,0,1.52234282769651,2.29391162142713,1.70894156152249,4.52640373369799,3.29089818468955,1.94541993357815,4.32025149790492,2.37937552888281,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0.296964680832639,0,0,0.140669416410513,0,8.89940920824502,0,0.597743964753209,1.10513566212459,0,0,0.492339221844278,0,0,0,0,0.394573622547734,7.18449277040819,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,1.06149077404007,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,1.13735843331278,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0,0,0,0,0.195551382734803,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0.0607495566580247,0.335434687599266,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.961086713109252,0.157204305099666,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.18413297125432,1.59437808376036,3.10774249086104,0,0,0,10.3993445844564,0.106691729694141,0.861074898304078,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0.235479278551542,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9326180081019,0.218559560503957,0,0.490296643507811,0,0.196308467114945,0.297046400327086,0,0,1.78569444161722,0.45120521581504,0,0,0,0,0,0,0.143339583151451,0,0,0,2.1161073620616,0,0,0,0,0,0.126698501011437,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0.426467963801962,0,1.55013383606415,1.92431614317159,0.112131862580613,0.25458863311266,0,0.653150243690884,0,3.36760265072938,0.573777643141411,0,0,0,0,0,0,0.244482888365733,0,0,1.61019034872821,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.410502947249729,0.236132343941038,4.72037132218685,10.3633937486247,4.4896675761662,0,0,0,0,0,0,3.87796785972314,5.41470008169383,2.82114131930607,0.895661896959697,2.91504299417082,0.77272670290256,0.145398238779565,0,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0.645484683583826,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,1.76171156811282,0.764546456250458,0,4.48406850385229,0,34.0307902296931,25.5456995786957,42.3539087938989,2.17342444007882,26.3997035973208,26.5130771211451,17.534405556712,1.11410456885174,15.9087190036412,26.8056012446182,9.47813523177554,2.81800903396485,0.780356085359269,5.59088875652499,4.14525026678773,10.7227141721969,39.8890854905943,48.4248898842381,18.8163942848958,3.96582699441482,24.142891096921,27.1465681931278,18.2174178254042,5.41561204350964,9.11516835398986,6.65316431113862,11.293133930833,15.2304067273758,11.2437653897111,7.57687206540854,7.39015197228942,40.1197419017218,21.3952156626806,23.1719046212478,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.196468613246569,0,0,0,0,0.132957960518865,0.715471872916026,1.71598473234038,2.22874500797739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0.352193736052904,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02629888782524,27.3872756680679,21.7783850608112,10.1390998661001,0,0,0,0,0,0,2.99161459204025,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.4625801012933,18.1199928687638,23.1598800433474,0,0,0,0,0,0.280660094433074,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0.670302275535787,0,0.0941438007767792,0,0,0,0,1.52234282769651,2.29391162142713,1.70894156152249,4.52640373369799,3.29089818468955,1.94541993357815,4.32025149790492,2.37937552888281,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0.296964680832639,0,0,0.140669416410513,0,8.89940920824502,0,0.597743964753209,1.10513566212459,0,0,0.492339221844278,0,0,0,0,0.394573622547734,7.18449277040819,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,1.06149077404007,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,1.13735843331278,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0,0,0,0,0.195551382734803,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0.0607495566580247,0.335434687599266,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.961086713109252,0.157204305099666,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.18413297125432,1.59437808376036,3.10774249086104,0,0,0,10.3993445844564,0.106691729694141,0.861074898304078,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0.235479278551542,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9326180081019,0.218559560503957,0,0.490296643507811,0,0.196308467114945,0.297046400327086,0,0,1.78569444161722,0.45120521581504,0,0,0,0,0,0,0.143339583151451,0,0,0,2.1161073620616,0,0,0,0,0,0.126698501011437,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0.426467963801962,0,1.55013383606415,1.92431614317159,0.112131862580613,0.25458863311266,0,0.653150243690884,0,3.36760265072938,0.573777643141411,0,0,0,0,0,0,0.244482888365733,0,0,1.61019034872821,0.320568492303233 | ||
|short_description=p3@OXNAD1 | |||
}} | }} |
Latest revision as of 12:03, 16 September 2015
Short description: | p3@OXNAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_OXNAD1_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | 27bp_to_AL832787_5end |
EntrezGene: | OXNAD1 |
HGNC: | 25128 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.54e-46 | 18 |
alpha-beta T cell | 3.54e-46 | 18 |
immature T cell | 3.54e-46 | 18 |
mature T cell | 3.54e-46 | 18 |
immature alpha-beta T cell | 3.54e-46 | 18 |
T cell | 2.15e-43 | 25 |
pro-T cell | 2.15e-43 | 25 |
CD8-positive, alpha-beta T cell | 2.41e-28 | 11 |
lymphoid lineage restricted progenitor cell | 3.32e-26 | 52 |
lymphocyte | 1.42e-25 | 53 |
common lymphoid progenitor | 1.42e-25 | 53 |
leukocyte | 1.98e-24 | 136 |
hematopoietic stem cell | 1.28e-17 | 168 |
CD4-positive, alpha-beta T cell | 2.87e-17 | 6 |
hematopoietic cell | 3.70e-16 | 177 |
nongranular leukocyte | 3.16e-15 | 115 |
hematopoietic oligopotent progenitor cell | 1.95e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.95e-13 | 161 |
hematopoietic lineage restricted progenitor cell | 6.77e-11 | 120 |
granulocyte | 7.01e-11 | 8 |
single nucleate cell | 2.19e-09 | 3 |
mononuclear cell | 2.19e-09 | 3 |
naive T cell | 2.51e-09 | 3 |
natural killer cell | 2.96e-09 | 3 |
pro-NK cell | 2.96e-09 | 3 |
basophil | 1.45e-08 | 3 |
blood cell | 1.02e-07 | 11 |
regulatory T cell | 9.83e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 9.83e-07 | 2 |
naive regulatory T cell | 9.83e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 6.11e-22 | 15 |
haemolymphatic fluid | 6.11e-22 | 15 |
organism substance | 6.11e-22 | 15 |
thymus | 2.93e-10 | 4 |
hemolymphoid system gland | 2.93e-10 | 4 |
thymic region | 2.93e-10 | 4 |
pharyngeal gland | 2.93e-10 | 4 |
thymus primordium | 2.93e-10 | 4 |
hemopoietic organ | 1.22e-08 | 7 |
immune organ | 1.22e-08 | 7 |
pharyngeal epithelium | 7.69e-07 | 6 |