FFCP PHASE1:Hg19::chr3:48514604..48514615,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:48514604..48514615,- to FFCP PHASE1:Hg19::chr3:48514604..48514615,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51246 | |EntrezGene=51246 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30376 | |HGNC=30376 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_ENST00000426002_5end | |||
|cluster_id=chr3:48514604..48514615,- | |||
|description=CAGE_peak_7_at_SHISA5_5end | |||
|id=chr3:48514604..48514615,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000039;4.89e-08;7!CL:0000586;4.89e-08;7!CL:0002322;9.21e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,9.76e-09,7;CL:0000586,9.76e-09,7;CL:0002322,7.07e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.01e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:3095,9.62e-07,22;DOID:2994,9.62e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.26e-16!115;UBERON:0000924!1.22e-10!173;UBERON:0006601!1.22e-10!173;UBERON:0004121!4.12e-10!169;UBERON:0005743!5.61e-10!86;UBERON:0000073!7.68e-10!94;UBERON:0001016!7.68e-10!94;UBERON:0001017!8.23e-10!82;UBERON:0000077!1.11e-09!130;UBERON:0004921!8.08e-09!129;UBERON:0004185!8.08e-09!129;UBERON:0001049!1.37e-08!57;UBERON:0005068!1.37e-08!57;UBERON:0006241!1.37e-08!57;UBERON:0007135!1.37e-08!57;UBERON:0000949!1.40e-08!45;UBERON:0002346!2.17e-08!90;UBERON:0002780!2.65e-08!41;UBERON:0001890!2.65e-08!41;UBERON:0006240!2.65e-08!41;UBERON:0000955!3.06e-08!69;UBERON:0006238!3.06e-08!69;UBERON:0000475!3.85e-08!365;UBERON:0003075!7.24e-08!86;UBERON:0007284!7.24e-08!86;UBERON:0004119!8.38e-08!169;UBERON:0000925!8.38e-08!169;UBERON:0006595!8.38e-08!169;UBERON:0001007!8.76e-08!155;UBERON:0001555!8.76e-08!155;UBERON:0007026!8.76e-08!155;UBERON:0003080!1.01e-07!42;UBERON:0005177!1.16e-07!107;UBERON:0001041!1.32e-07!98;UBERON:0000481!1.72e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0000949;7.23e-10;43!UBERON:0002368;3.56e-08;33!UBERON:0002780;4.27e-08;41!UBERON:0001890;4.27e-08;41!UBERON:0002107;7.33e-08;19!UBERON:0006925;7.33e-08;19!UBERON:0001893;3.53e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.52e-16,114;UBERON:0000949,1.02e-11,45;UBERON:0002780,1.46e-11,41;UBERON:0001890,1.46e-11,41;UBERON:0003080,1.46e-11,41;UBERON:0006240,1.46e-11,41;UBERON:0011216,2.85e-10,223;UBERON:0001017,6.75e-09,81;UBERON:0000073,8.15e-09,53;UBERON:0002616,8.15e-09,53;UBERON:0001049,8.83e-09,56;UBERON:0005068,8.83e-09,56;UBERON:0006241,8.83e-09,56;UBERON:0007135,8.83e-09,56;UBERON:0002368,1.32e-08,35;UBERON:0000955,2.74e-08,68;UBERON:0006238,2.74e-08,68;UBERON:0005177,2.87e-08,101;UBERON:0001016,3.22e-08,89;UBERON:0002107,4.02e-08,19;UBERON:0006925,4.02e-08,19;UBERON:0008836,4.02e-08,19;UBERON:0001893,5.30e-08,34;UBERON:0009856,1.51e-07,26;UBERON:0003056,2.33e-07,61;UBERON:0001869,3.80e-07,32;UBERON:0007499,3.99e-07,25;UBERON:0001950,4.98e-07,20;UBERON:0009854,6.47e-07,23;UBERON:0002791,6.73e-07,32;UBERON:0000025,9.19e-07,192 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.140954404095971,0,0,0.872338524100369,0,0.631719873426831,0.783556884599516,1.22866968250754,1.39560233594486,0.218441372130172,0.791300934685361,0.247532705920093,0.331397375727916,0.672325146451775,0,0,0,0.984968464614303,0.816002764977012,0.626909442956176,0.572471974262113,0,0.251085279189606,0.382067028739756,0.246301768349837,0.236132343941038,0,0,0.154816123316076,0,0.30120591877825,0.739508020333575,2.01414721508784,0.284338464974843,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0.425208599930087,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,1.05353633910031,0.196709770113833,0,0,0,0.651844533267181,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0.14828656316206,0.267540828089713,0,0.113309342697566,0,0,0,0.318565414324097,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0.534880391567015,0.289648807765598,0,1.34140171940727,0.255725123687061,0.361439152384566,0,0.144846518960824,0.795285947051099,0,0.472674085820339,0.443458794925128,0,1.83370705696798,0,0.741568885568859,0,0,0,0.476981248610684,1.14398982156026,0,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0,0,0.732186172644509,0,0,0,0,0.225222960966644,3.06633274931766,0.949265659568129,0,0,0,0.436094052142534,0,0.759783069987479,0,0.860509862246441,0,0,0,0.49333509683432,0.311211035399766,0.134710672069688,0.163461903113459,0.151357427644931,0,0.70296429550139,0,0.570471821544449,0.149448680551801,0,0.161872944368132,0.140450806702248,0,0.491337269247072,0.206651562351531,1.18800285728205,0.247266929278557,2.73048408581408,0,0.673344455816265,0.375355559615893,0.831192346452549,0,0,1.05166641234618,0.226864366320042,0.717558542755448,0.640672166455702,0,0,0.309157587715317,0.515281080091258,0.37223371266318,0,0.389748020644795,0.252433774244115,0.0920498986422993,0,1.06502877754984,1.0075209822764,0.508681776931463,0,0,0.286804595389004,4.14710600840624,5.83130980614535,3.71820617182459,3.83545903556871,1.51392510525377,1.09493207722749,0,1.28648187638577,1.38134921352481,0,0,0.591534000199219,0.505754070234305,0.964044119533928,0.55146986366197,0.217879444092406,1.18635309555548,0.404493924480493,0,0,1.4763109092493,0,1.2347220339942,1.47008711385542,5.07020139287323,1.96565443335525,2.95394953340702,0.441463099414651,1.96781501668982,0.514703430895577,0.878002283269004,1.1240175325762,0.201057944823262,0.462942225792648,0.651616610620649,0,0,1.507095264676,0.587043471179108,0,0,0,6.3216351836742,4.29243081047436,0,0,0.445893486866185,0,0.16798212819886,0.283550194484773,0.358234090811393,0.581267877027924,0.766765358330422,0,0,0.829312462163088,1.00883967391873,1.51490920111656,0.253991577168676,2.29193055334967,0,0,0.411309970813294,0.901029173531752,0.285826432630578,0.672786506072164,0,0.22001485746285,0,0,0,0,1.04007436911366,0.257207374262142,0,0.799266537048298,0.428933980974443,1.08524321078289,0,0,0.710783897485092,0.791951872933429,0.301439377059586,0.871533458600294,0.399891964728228,0,0.502257091432126,0,0.239624855491583,0,0,0,0.410952645100767,0.179060963239896,0.224170287987055,0.197030760201927,0.215627574859517,0,0.254094624222463,0,1.54657762555539,0.837581326671744,0.637938751653163,0,0,0,0.49076596687656,0,0.542530047399471,0.623912584592421,0.535286966391485,0.315404830067869,0.35142424497814,0,0,0,0,0.553107505625109,0.260650843404249,1.17480694477644,2.40200396667599,0,0,0,2.12189300012382,1.66435439510497,1.20956117331872,0,0.153461973288062,0.280660094433074,0.384417447767103,0.511707249066704,0.321707842287215,0,0.154209693802656,0.177561725313127,0.164254312027618,0,0.116210378459959,3.86750238693191,0.200506470303285,0.460404944679482,0.229628896329213,0.182091168006717,0.393373244878272,0,0.924184045252977,0,0,0.422206515571503,0,0.170093705276516,1.51141141271498,0,0.270946437543853,1.00337954770971,1.01950509218015,0,1.34324852833307,1.31555925987561,0.522870902049801,0.512900250232778,0.984043937099117,0,1.13345112812495,0.640986253728404,0.742585499285292,1.72279661398852,0,0,0.580024309752732,0,0.307007349452259,0.137836572484531,0.322260734604821,0.145016693914229,0.340906509664404,0.623224249527161,0.661139661443912,0,0,0.50578890427775,0.929691098594572,0.62962469366128,0.6970372701606,0,0.532306030317022,1.73986598415015,0.18532421910392,0.143124886741991,0,0,0.38126038784765,0,0.42793898803392,0.636406495851874,1.56989728039846,0,0.54907405947211,0.471249609382746,0.202182481573316,0,0.421258456238981,1.95053495635836,0,0,0.272999822815972,0.282810863907425,1.13008116620243,0,0,0,1.15755106853338,0,0.811641507850816,0.30982349809975,0.563391205064483,0.143411352204052,0.687743287091848,0,0,0.422215270595328,0,0.379473173765715,1.39973888097993,0.48111056362756,0,0,1.03558180854457,0.86101074534246,0,1.7737206141467,0,1.01489521846434,1.52927441428475,1.13929437434833,1.66762242820452,0.822724546172388,1.94541993357815,0.540031437238115,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| ||
|short_description=p7@SHISA5 | |||
}} | }} |
Latest revision as of 14:14, 18 September 2015
Short description: | p7@SHISA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SHISA5_5end |
Coexpression cluster: | NA |
Association with transcript: | 1bp_to_ENST00000426002_5end |
EntrezGene: | SHISA5 |
HGNC: | 30376 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 9.76e-09 | 7 |
germ cell | 9.76e-09 | 7 |
embryonic stem cell | 7.07e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.52e-16 | 114 |
endocrine system | 1.02e-11 | 45 |
regional part of forebrain | 1.46e-11 | 41 |
forebrain | 1.46e-11 | 41 |
anterior neural tube | 1.46e-11 | 41 |
future forebrain | 1.46e-11 | 41 |
organ system subdivision | 2.85e-10 | 223 |
central nervous system | 6.75e-09 | 81 |
regional part of nervous system | 8.15e-09 | 53 |
regional part of brain | 8.15e-09 | 53 |
neural tube | 8.83e-09 | 56 |
neural rod | 8.83e-09 | 56 |
future spinal cord | 8.83e-09 | 56 |
neural keel | 8.83e-09 | 56 |
endocrine gland | 1.32e-08 | 35 |
brain | 2.74e-08 | 68 |
future brain | 2.74e-08 | 68 |
trunk region element | 2.87e-08 | 101 |
nervous system | 3.22e-08 | 89 |
liver | 4.02e-08 | 19 |
digestive gland | 4.02e-08 | 19 |
liver bud | 4.02e-08 | 19 |
telencephalon | 5.30e-08 | 34 |
sac | 1.51e-07 | 26 |
pre-chordal neural plate | 2.33e-07 | 61 |
cerebral hemisphere | 3.80e-07 | 32 |
epithelial sac | 3.99e-07 | 25 |
neocortex | 4.98e-07 | 20 |
digestive tract diverticulum | 6.47e-07 | 23 |
regional part of telencephalon | 6.73e-07 | 32 |
tube | 9.19e-07 | 192 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 9.62e-07 | 22 |
germ cell cancer | 9.62e-07 | 22 |