FFCP PHASE1:Hg19::chr4:41614720..41614734,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22998 | |EntrezGene=22998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |HGNC=29191 | ||
|TSSclassifier=strong | |||
|UniProt=E9PDJ9 | |UniProt=E9PDJ9 | ||
|association_with_transcript=0bp_to_ENST00000509277_5end | |||
|cluster_id=chr4:41614720..41614734,+ | |||
|description=CAGE_peak_28_at_LIMCH1_5end | |||
|id=chr4:41614720..41614734,+ | |||
|ontology_enrichment_celltype=CL:0000064!2.04e-07!3;CL:0005012!2.04e-07!3;CL:0000067!2.04e-07!3;CL:0002304!2.04e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000062;3.74e-12;9!CL:0002586;1.30e-09;3!CL:0000149;1.59e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000062,4.03e-10,11;CL:0000375,4.03e-10,11;CL:0000335,4.03e-10,11;CL:0002586,1.30e-09,3;CL:0000149,1.59e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.77e-33;3!UBERON:0005425;9.79e-26;1!CL:0000335;4.03e-10;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;1.37e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,1.37e-13,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.57e-14!115;UBERON:0003056!8.34e-12!61;UBERON:0003075!1.30e-11!86;UBERON:0007284!1.30e-11!86;UBERON:0000073!5.44e-11!94;UBERON:0001016!5.44e-11!94;UBERON:0002346!8.31e-11!90;UBERON:0005743!2.09e-09!86;UBERON:0002619!3.18e-09!22;UBERON:0001950!1.82e-08!20;UBERON:0000153!2.26e-08!129;UBERON:0007811!2.26e-08!129;UBERON:0000955!2.28e-08!69;UBERON:0006238!2.28e-08!69;UBERON:0000033!2.65e-08!123;UBERON:0001032!2.84e-08!24;UBERON:0004456!2.84e-08!24;UBERON:0002780!3.51e-08!41;UBERON:0001890!3.51e-08!41;UBERON:0006240!3.51e-08!41;UBERON:0002791!6.28e-08!33;UBERON:0003080!6.49e-08!42;UBERON:0000956!6.68e-08!25;UBERON:0000203!6.68e-08!25;UBERON:0002104!6.75e-08!21;UBERON:0001049!8.14e-08!57;UBERON:0005068!8.14e-08!57;UBERON:0006241!8.14e-08!57;UBERON:0007135!8.14e-08!57;UBERON:0004121!9.34e-08!169;UBERON:0002020!1.03e-07!34;UBERON:0003528!1.03e-07!34;UBERON:0001893!1.27e-07!34;UBERON:0002616!2.02e-07!59;UBERON:0001778!2.04e-07!3;UBERON:0001775!2.04e-07!3;UBERON:0000924!2.14e-07!173;UBERON:0006601!2.14e-07!173;UBERON:0007625!3.32e-07!11;UBERON:0001017!4.29e-07!82;UBERON:0001869!6.06e-07!32;UBERON:0000020!6.33e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;9.79e-26;1!UBERON:0001785;9.79e-26;1!UBERON:0002464;9.79e-26;1!UBERON:0004904;9.79e-26;1!UBERON:0001021;9.79e-26;1!UBERON:0000966;1.10e-20;5!UBERON:0005388;1.10e-20;5!UBERON:0001802;1.10e-20;5!UBERON:0003714;1.37e-13;2!UBERON:0005162;1.37e-13;2!UBERON:0000122;1.37e-13;2!UBERON:0000010;5.83e-12;8!UBERON:0002104;3.00e-11;21!UBERON:0001032;6.29e-10;24!UBERON:0004456;6.29e-10;24!UBERON:0001781;1.30e-09;3!UBERON:0001782;1.30e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,2.21e-37,6;UBERON:0005388,2.21e-37,6;UBERON:0001802,2.21e-37,6;UBERON:0000941,7.62e-26,1;UBERON:0001785,7.62e-26,1;UBERON:0002464,7.62e-26,1;UBERON:0004904,7.62e-26,1;UBERON:0001021,7.62e-26,1;UBERON:0003902,7.62e-26,1;UBERON:0005425,7.62e-26,1;UBERON:0001781,1.26e-25,4;UBERON:0003714,1.21e-13,2;UBERON:0005162,1.21e-13,2;UBERON:0000122,1.21e-13,2;UBERON:0000010,5.22e-12,8;UBERON:0000019,8.90e-12,20;UBERON:0000047,8.90e-12,20;UBERON:0010312,8.90e-12,20;UBERON:0004088,8.90e-12,20;UBERON:0010230,8.90e-12,20;UBERON:0003072,8.90e-12,20;UBERON:0004128,8.90e-12,20;UBERON:0003071,8.90e-12,20;UBERON:0000970,3.00e-11,21;UBERON:0002104,3.00e-11,21;UBERON:0001456,9.07e-11,22;UBERON:0000020,6.29e-10,24;UBERON:0001032,6.29e-10,24;UBERON:0004456,6.29e-10,24;UBERON:0001782,1.30e-09,3;UBERON:0005424,1.30e-09,3;UBERON:0005085,7.90e-08,31 | |||
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|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767309866440312,0,0,0.511707249066704,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0.784349769176855,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,2.56450125116389,0.328014645699706,0,0,3.11336180382368,4.37300349579116,0,0,0,0,0,0,0,0,0,0,0.623224249527161,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7133421029625,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0.140669416410513,0,0,0,0,0.828851746593443,0,0,0,0,0.0898683511473268,0.179021174675609,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26598838716816,0.326465616318295,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0.789168805698781,0,0,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0.407712618220842,0.209205692624666,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0,0,0.201550417460179,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0.157611414598396,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0.258565912723101,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0.308801447160972,0,0,0,0.506827321959218,0.512483037175893,0.690860683462397,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91126990771041,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0.205116364240755,0.756215088665154,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0.198916222116275,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0.131545547125698,0,0,0.39246546425257,0,0,0,0,0,1.07214816264985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3196288626764,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0.436350690340377,0,0,0,0,0,0.218531143927391,0,0,0,0,0,0,0,0,0.103432995861895,0,0.23806443146374,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p28@LIMCH1 | |||
}} | }} |
Latest revision as of 19:41, 17 September 2015
Short description: | p28@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_LIMCH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000509277_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | E9PDJ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
osteoblast | 4.03e-10 | 11 |
osteoprogenitor cell | 4.03e-10 | 11 |
mesenchyme condensation cell | 4.03e-10 | 11 |
retinal pigment epithelial cell | 1.30e-09 | 3 |
visual pigment cell | 1.59e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
retina | 2.21e-37 | 6 |
photoreceptor array | 2.21e-37 | 6 |
posterior segment of eyeball | 2.21e-37 | 6 |
cranial nerve II | 7.62e-26 | 1 |
cranial nerve | 7.62e-26 | 1 |
nerve trunk | 7.62e-26 | 1 |
nerve connecting eye with brain | 7.62e-26 | 1 |
nerve | 7.62e-26 | 1 |
retinal neural layer | 7.62e-26 | 1 |
presumptive neural retina | 7.62e-26 | 1 |
layer of retina | 1.26e-25 | 4 |
neural tissue | 1.21e-13 | 2 |
multi cell component structure | 1.21e-13 | 2 |
neuron projection bundle | 1.21e-13 | 2 |
peripheral nervous system | 5.22e-12 | 8 |
camera-type eye | 8.90e-12 | 20 |
simple eye | 8.90e-12 | 20 |
immature eye | 8.90e-12 | 20 |
ocular region | 8.90e-12 | 20 |
eyeball of camera-type eye | 8.90e-12 | 20 |
optic cup | 8.90e-12 | 20 |
optic vesicle | 8.90e-12 | 20 |
eye primordium | 8.90e-12 | 20 |
eye | 3.00e-11 | 21 |
visual system | 3.00e-11 | 21 |
face | 9.07e-11 | 22 |
sense organ | 6.29e-10 | 24 |
sensory system | 6.29e-10 | 24 |
entire sense organ system | 6.29e-10 | 24 |
pigmented layer of retina | 1.30e-09 | 3 |
presumptive retinal pigmented epithelium | 1.30e-09 | 3 |
ectodermal placode | 7.90e-08 | 31 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 1.37e-13 | 2 |