FFCP PHASE1:Hg19::chr9:29214290..29214311,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-132bp_to_AK055810_5end | |||
|cluster_id=chr9:29214290..29214311,+ | |||
|description=CAGE_peak_1_at_AK055810_5end | |||
|id=chr9:29214290..29214311,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.29e-07!5;CL:0000047!6.85e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002568;3.56e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.55e-08,8;CL:0002568,4.41e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0005795;4.64e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!4.96e-24!20;UBERON:0000073!3.97e-23!94;UBERON:0001016!3.97e-23!94;UBERON:0005743!1.12e-21!86;UBERON:0002619!2.29e-21!22;UBERON:0001017!6.39e-21!82;UBERON:0000924!3.42e-19!173;UBERON:0006601!3.42e-19!173;UBERON:0004121!2.70e-18!169;UBERON:0000956!3.73e-18!25;UBERON:0000203!3.73e-18!25;UBERON:0002020!8.67e-18!34;UBERON:0003528!8.67e-18!34;UBERON:0001893!1.06e-17!34;UBERON:0001869!1.18e-17!32;UBERON:0002346!8.16e-17!90;UBERON:0002791!1.18e-16!33;UBERON:0003075!6.23e-16!86;UBERON:0007284!6.23e-16!86;UBERON:0000955!6.87e-15!69;UBERON:0006238!6.87e-15!69;UBERON:0001049!1.77e-14!57;UBERON:0005068!1.77e-14!57;UBERON:0006241!1.77e-14!57;UBERON:0007135!1.77e-14!57;UBERON:0002780!1.60e-13!41;UBERON:0001890!1.60e-13!41;UBERON:0006240!1.60e-13!41;UBERON:0003056!1.78e-13!61;UBERON:0003080!4.84e-13!42;UBERON:0002616!1.15e-12!59;UBERON:0000153!3.95e-11!129;UBERON:0007811!3.95e-11!129;UBERON:0000033!1.00e-10!123;UBERON:0007023!5.92e-10!115;UBERON:0001871!9.63e-10!7;UBERON:0000922!1.30e-08!612;UBERON:0001872!3.53e-08!5;UBERON:0000468!4.36e-07!659;UBERON:0000200!6.01e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;3.02e-25;20!UBERON:0002619;6.22e-23;22!UBERON:0000956;3.96e-20;25!UBERON:0000203;3.96e-20;25!UBERON:0001871;4.26e-16;6!UBERON:0003528;3.82e-15;34!UBERON:0002020;3.82e-15;34!UBERON:0001869;3.82e-15;32!UBERON:0001876;4.00e-15;2!UBERON:0002791;1.89e-14;32!UBERON:0001893;6.57e-13;34!UBERON:0001870;4.50e-10;3!UBERON:0006834;1.17e-08;1!UBERON:0005795;1.51e-08;1!UBERON:0002780;3.99e-08;41!UBERON:0001890;3.99e-08;41!UBERON:0001016;8.51e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,2.88e-25,20;UBERON:0002619,5.94e-23,22;UBERON:0000956,3.81e-20,25;UBERON:0000203,3.81e-20,25;UBERON:0001871,2.72e-16,6;UBERON:0001016,5.54e-16,89;UBERON:0001017,1.01e-15,81;UBERON:0002791,1.41e-15,32;UBERON:0001869,1.41e-15,32;UBERON:0001876,2.20e-15,2;UBERON:0003528,1.31e-14,34;UBERON:0002020,1.31e-14,34;UBERON:0001893,1.31e-14,34;UBERON:0002780,6.10e-12,41;UBERON:0001890,6.10e-12,41;UBERON:0003080,6.10e-12,41;UBERON:0006240,6.10e-12,41;UBERON:0000955,4.75e-10,68;UBERON:0006238,4.75e-10,68;UBERON:0001870,5.42e-10,3;UBERON:0004121,3.00e-09,171;UBERON:0000924,3.00e-09,171;UBERON:0006601,3.00e-09,171;UBERON:0000073,5.61e-09,53;UBERON:0002616,5.61e-09,53;UBERON:0006834,1.13e-08,1;UBERON:0001049,1.97e-08,56;UBERON:0005068,1.97e-08,56;UBERON:0006241,1.97e-08,56;UBERON:0007135,1.97e-08,56;UBERON:0003056,1.22e-07,61 | |||
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| ||
|short_description=p1@AK055810 | |||
}} | }} |
Latest revision as of 01:20, 1 August 2015
Short description: | p1@AK055810 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AK055810_5end |
Coexpression cluster: | NA |
Association with transcript: | -132bp_to_AK055810_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.55e-08 | 8 |
mesenchymal stem cell of Wharton's jelly | 4.41e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
neocortex | 2.88e-25 | 20 |
regional part of cerebral cortex | 5.94e-23 | 22 |
cerebral cortex | 3.81e-20 | 25 |
pallium | 3.81e-20 | 25 |
temporal lobe | 2.72e-16 | 6 |
nervous system | 5.54e-16 | 89 |
central nervous system | 1.01e-15 | 81 |
regional part of telencephalon | 1.41e-15 | 32 |
cerebral hemisphere | 1.41e-15 | 32 |
amygdala | 2.20e-15 | 2 |
brain grey matter | 1.31e-14 | 34 |
gray matter | 1.31e-14 | 34 |
telencephalon | 1.31e-14 | 34 |
regional part of forebrain | 6.10e-12 | 41 |
forebrain | 6.10e-12 | 41 |
anterior neural tube | 6.10e-12 | 41 |
future forebrain | 6.10e-12 | 41 |
brain | 4.75e-10 | 68 |
future brain | 4.75e-10 | 68 |
frontal cortex | 5.42e-10 | 3 |
ectoderm-derived structure | 3.00e-09 | 171 |
ectoderm | 3.00e-09 | 171 |
presumptive ectoderm | 3.00e-09 | 171 |
regional part of nervous system | 5.61e-09 | 53 |
regional part of brain | 5.61e-09 | 53 |
uterus or analog | 1.13e-08 | 1 |
neural tube | 1.97e-08 | 56 |
neural rod | 1.97e-08 | 56 |
future spinal cord | 1.97e-08 | 56 |
neural keel | 1.97e-08 | 56 |
pre-chordal neural plate | 1.22e-07 | 61 |