FFCP PHASE1:Hg19::chrX:80377162..80377180,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:80377162..80377180,- to FFCP PHASE1:Hg19::chrX:80377162..80377180,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79366 | |EntrezGene=79366 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8013 | |HGNC=8013 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JSL0 | |UniProt=Q5JSL0 | ||
|association_with_transcript=1bp_to_ENST00000430960_5end | |||
|cluster_id=chrX:80377162..80377180,- | |||
|coexpression_cluster_id=C1098 | |||
|description=CAGE_peak_2_at_HMGN5_5end | |||
|id=chrX:80377162..80377180,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.46e-08;29 | |||
|ontology_enrichment_disease=DOID:2531!1.93e-15!51;DOID:0060083!1.93e-15!51;DOID:1240!2.40e-14!39;DOID:8692!1.64e-11!31;DOID:14566!6.93e-11!239;DOID:162!1.16e-10!235;DOID:0050686!3.15e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:1240;7.09e-14;39!DOID:8692;5.74e-13;31!DOID:2531;7.56e-12;51!DOID:0060083;7.56e-12;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,5.30e-19,51;DOID:0060083,5.30e-19,51;DOID:1240,5.18e-17,39;DOID:162,3.38e-14,235;DOID:14566,8.66e-14,239;DOID:8692,2.00e-13,31;DOID:0050686,9.00e-12,137 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.37e-08!57;UBERON:0005068!1.37e-08!57;UBERON:0006241!1.37e-08!57;UBERON:0007135!1.37e-08!57;UBERON:0003080!3.35e-08!42;UBERON:0002780!3.95e-08!41;UBERON:0001890!3.95e-08!41;UBERON:0006240!3.95e-08!41;UBERON:0005743!1.69e-07!86;UBERON:0001017!1.77e-07!82;UBERON:0002346!1.77e-07!90;UBERON:0007023!4.46e-07!115;UBERON:0002616!8.33e-07!59;UBERON:0003056!9.86e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.82e-08;9!UBERON:0001557;5.82e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002780,1.47e-08,41;UBERON:0001890,1.47e-08,41;UBERON:0003080,1.47e-08,41;UBERON:0006240,1.47e-08,41;UBERON:0001049,1.70e-08,56;UBERON:0005068,1.70e-08,56;UBERON:0006241,1.70e-08,56;UBERON:0007135,1.70e-08,56;UBERON:0001017,4.14e-08,81;UBERON:0000073,4.90e-08,53;UBERON:0002616,4.90e-08,53;UBERON:0001737,6.02e-08,9;UBERON:0011216,2.85e-07,223;UBERON:0001016,3.22e-07,89;UBERON:0007023,3.30e-07,114 | |||
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| ||
|short_description=p2@HMGN5 | |||
}} | }} |
Latest revision as of 12:39, 16 September 2015
Short description: | p2@HMGN5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMGN5_5end |
Coexpression cluster: | C1098_acute_teratocarcinoma_myelodysplastic_colon_adult_Mast_merkel |
Association with transcript: | 1bp_to_ENST00000430960_5end |
EntrezGene: | HMGN5 |
HGNC: | 8013 |
UniProt: | Q5JSL0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 1.47e-08 | 41 |
forebrain | 1.47e-08 | 41 |
anterior neural tube | 1.47e-08 | 41 |
future forebrain | 1.47e-08 | 41 |
neural tube | 1.70e-08 | 56 |
neural rod | 1.70e-08 | 56 |
future spinal cord | 1.70e-08 | 56 |
neural keel | 1.70e-08 | 56 |
central nervous system | 4.14e-08 | 81 |
regional part of nervous system | 4.90e-08 | 53 |
regional part of brain | 4.90e-08 | 53 |
larynx | 6.02e-08 | 9 |
organ system subdivision | 2.85e-07 | 223 |
nervous system | 3.22e-07 | 89 |
adult organism | 3.30e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 5.30e-19 | 51 |
immune system cancer | 5.30e-19 | 51 |
leukemia | 5.18e-17 | 39 |
cancer | 3.38e-14 | 235 |
disease of cellular proliferation | 8.66e-14 | 239 |
myeloid leukemia | 2.00e-13 | 31 |
organ system cancer | 9.00e-12 | 137 |