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(Created page with "{{f5samples |id=FF:11694-123A2 |name=Amniotic Epithelial Cells, donor3 |sample_id=11694 |rna_tube_id=123A2 |rna_box=123 |rna_position=A2 |sample_cell_lot=N/A |sample_c...")
 
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{{f5samples
{{f5samples
|id=FF:11694-123A2
|DRA_sample_Accession=CAGE@SAMD00005453
|name=Amniotic Epithelial Cells, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005453
|sample_id=11694
|accession_numbers=CAGE;DRX008109;DRR008981;DRZ000406;DRZ001791;DRZ011756;DRZ013141
|rna_tube_id=123A2
|accession_numbers_RNASeq=sRNA-Seq;DRX037064;DRR041430;DRZ007072
|rna_box=123
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
|rna_position=A2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002536
|sample_cell_lot=N/A
|sample_cell_catalog=lot:4229
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC7105
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=amnion
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.90000
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=amniotic epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.44000
|sample_note=
|profile_hcage=CNhs12125,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10005,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000255,CL:0000548,CL:0002371,CL:0002536
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000158,UBERON:0000305,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000478,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0003081,UBERON:0004120,UBERON:0004121,UBERON:0004871,UBERON:0004923,UBERON:0005423,UBERON:0005631
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000009
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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C4!0.63!4.22!HOXC4;;chr5:72743793..72743855,-!p4@FOXD1!0.63!3.96!FOXD1;;chr13:73633131..73633149,+!p1@KLF5!0.62!40.62!KLF5;;chr6:19837592..19837621,+!p1@ID4!0.62!22.95!ID4;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.77!ZNF503;;chr12:54422217..54422239,+!p3@HOXC6!0.62!3.17!HOXC6;;chr6:10415263..10415274,-!p8@TFAP2A!0.62!3.17!TFAP2A;;chr1:164528410..164528428,+!p1@PBX1!0.60!26.64!PBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.60!12.13!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.60!6.86!BHLHE40;;chr16:29817841..29817865,+!p1@MAZ!0.59!76.23!MAZ;;chr1:59249732..59249749,-!p2@JUN!0.59!42.47!JUN;;chr17:45928443..45928473,-!p2@SP6!0.59!2.90!SP6;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.90!ZFY;;chr6:35464817..35464894,-!p1@TEAD3!0.58!52.23!TEAD3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.57!361.10!ZFP36L2;;chr10:3827389..3827408,-!p1@KLF6!0.57!258.23!KLF6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!239.76!TAX1BP3;;chr16:29817789..29817838,+!p2@MAZ!0.57!45.10!MAZ;;chr17:61920280..61920343,-!p2@SMARCD2!0.57!32.44!SMARCD2;;chr17:41622834..41622883,-!p6@ETV4!0.57!3.43!ETV4;;chrX:106960285..106960299,-!p1@TSC22D3!0.56!89.42!TSC22D3;;chr17:70117153..70117174,+!p1@SOX9!0.56!33.50!SOX9;;chr12:53625966..53626012,-!p2@RARG!0.56!8.18!RARG;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.59!ZNF503;;chr11:113930401..113930422,+!p3@ZBTB16!0.56!2.64!ZBTB16;;chr20:18038486..18038520,-!p2@OVOL2!0.56!2.64!OVOL2;;chr4:57547454..57547469,-!p1@HOPX!0.56!2.64!HOPX;;chr14:69259772..69259790,-!p1@ZFP36L1!0.55!327.86!ZFP36L1;;chr12:124873357..124873401,-!p1@NCOR2!0.55!37.45!NCOR2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.18!HOXB2;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.54!HOXA1;;chr17:41622925..41622976,-!p3@ETV4!0.55!4.22!ETV4;;chr3:42947600..42947680,+!p1@ZNF662!0.55!3.96!ZNF662;;chr2:60778035..60778060,-!p4@BCL11A!0.55!3.17!BCL11A;;chr19:19516464..19516492,+!p4@GATAD2A!0.54!15.30!GATAD2A;;chr8:102217679..102217719,-!p2@ZNF706!0.54!10.29!ZNF706;;chrX:106959661..106959763,-!p4@TSC22D3!0.54!8.70!TSC22D3;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.22!ETV4;;chr6:126240356..126240379,+!p7@NCOA7!0.54!3.17!NCOA7;;chr3:12330560..12330579,+!p1@PPARG!0.53!2.90!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.53!2.90!FOXP1;;chr22:24093154..24093183,-!p2@ZNF70!0.53!2.37!ZNF70;;chr2:5832493..5832507,+!p2@SOX11!0.53!2.37!SOX11;;chr16:67881647..67881663,-!p3@CENPT!0.53!2.37!CENPT;;chr10:8097321..8097348,+!p4@GATA3!0.53!2.37!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.37!PKNOX2;;chr2:60780753..60780800,-!p1@BCL11A!0.52!14.24!BCL11A;;chr12:66218598..66218645,+!p2@HMGA2!0.52!13.45!HMGA2;;chr2:25475120..25475176,-!p2@DNMT3A!0.52!3.43!DNMT3A;;chr20:42295745..42295765,+!p1@MYBL2!0.51!48.27!MYBL2;;chr11:61520075..61520136,+!p1@C11orf9!0.51!5.54!C11orf9;;chr3:5021113..5021180,+!p1@BHLHE40!0.50!203.63!BHLHE40;;chr1:59249707..59249727,-!p1@JUN!0.50!120.81!JUN;;chr3:150126759..150126784,+!p2@TSC22D2!0.50!12.66!TSC22D2;;chr17:46622070..46622109,-!p1@HOXB2!0.50!5.80!HOXB2;;chr19:4066890..4066903,-!p6@ZBTB7A!0.50!3.96!ZBTB7A;;chr5:72744562..72744573,-!p3@FOXD1!0.50!2.90!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.49!2.11!MSX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.49!2.11!TFAP2A;;chr16:73093210..73093223,-!p13@ZFHX3!0.49!2.11!ZFHX3;;chr16:86600870..86600921,+!p2@FOXC2!0.49!2.11!FOXC2;;chr4:149366111..149366128,-!p7@NR3C2!0.49!2.11!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.49!2.11!HOPX;;chr10:8097295..8097320,+!p6@GATA3!0.49!2.11!GATA3;;chr5:176738887..176738934,-!p1@MXD3!0.48!17.67!MXD3;;chr3:12329358..12329393,+!p3@PPARG!0.48!6.07!PPARG;;chr6:31869828..31869880,-!p1@ZBTB12!0.48!4.48!ZBTB12;;chr11:46299186..46299195,+!p3@CREB3L1!0.48!2.37!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.43!HMGA2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.47!2.64!L3MBTL4;;chr1:33721900..33721921,+!p2@ZNF362!0.46!5.80!ZNF362;;chr19:7580944..7581031,+!p1@ZNF358!0.45!77.55!ZNF358;;chr19:45908286..45908291,-!p3@PPP1R13L!0.45!1.85!PPP1R13L;;chr19:46806868..46806883,+!p3@HIF3A!0.45!1.85!HIF3A;;chr7:27142290..27142310,-!p1@HOXA2!0.45!1.85!HOXA2;;chr2:16080635..16080650,+!p4@MYCN!0.45!1.85!MYCN;;chr22:42229246..42229270,+!p2@SREBF2!0.44!30.86!SREBF2;;chr15:31619326..31619390,+!p2@KLF13!0.44!28.75!KLF13;;chr2:85360499..85360598,+!p1@TCF7L1!0.44!13.45!TCF7L1;;chr12:66218255..66218304,+!p3@HMGA2!0.44!6.07!HMGA2;;chr2:113993052..113993097,-!p2@PAX8!0.44!5.01!PAX8;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.44!3.43!MEIS3P1;;chr6:85474299..85474324,-!p1@TBX18!0.43!3.69!TBX18;;chr12:66218573..66218596,+!p7@HMGA2!0.43!2.90!HMGA2;;chr6:32157947..32157992,-!p1@PBX2!0.42!40.09!PBX2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.42!26.38!TAX1BP3;;chr14:62162258..62162269,+!p2@HIF1A!0.42!22.42!HIF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.42!5.54!NCOA7;;chr17:41623009..41623053,-!p4@ETV4!0.42!3.17!ETV4;;chr3:32023232..32023273,+!p1@ZNF860!0.42!2.64!ZNF860;;chr16:73081974..73082002,-!p7@ZFHX3!0.42!2.11!ZFHX3;;chr7:137686791..137686821,-!p1@CREB3L2!0.41!67.26!CREB3L2;;chr2:101436564..101436647,+!p1@NPAS2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|fonse_cell_line=
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 67: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.ctss.bed.gz
|id=FF:11694-123A2
|is_a=EFO:0002091;;FF:0000009
|is_obsolete=
|library_id=CNhs12125
|library_id_phase_based=2:CNhs12125
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11694
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGAAA.11694
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11694
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGAAA.11694
|name=Amniotic Epithelial Cells, donor3
|namespace=FANTOM5
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|rna_box=123
|rna_catalog_number=SC7105
|rna_concentration=1.44
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=A2
|rna_rin=9.9
|rna_sample_type=total RNA
|rna_tube_id=123A2
|rna_weight_ug=10
|rnaseq_library_id=SRhi10005.GTGAAA
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=lot:4229
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=amniotic epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.72123266982379e-214!GO:0005737;cytoplasm;2.61053725596698e-190!GO:0043226;organelle;1.74040605355976e-169!GO:0043229;intracellular organelle;5.09235631040283e-169!GO:0043231;intracellular membrane-bound organelle;4.69203280496889e-161!GO:0043227;membrane-bound organelle;1.14745462050995e-160!GO:0044444;cytoplasmic part;3.25355763551822e-136!GO:0044422;organelle part;3.08992613831125e-133!GO:0044446;intracellular organelle part;6.71842241932848e-132!GO:0032991;macromolecular complex;1.01923784015067e-83!GO:0044238;primary metabolic process;1.41276165502882e-73!GO:0030529;ribonucleoprotein complex;1.47050102750858e-72!GO:0005515;protein binding;1.91986728136609e-72!GO:0044237;cellular metabolic process;3.40414413560267e-72!GO:0043170;macromolecule metabolic process;5.41153534147953e-66!GO:0005739;mitochondrion;3.31701517164035e-64!GO:0043233;organelle lumen;1.79723499739946e-56!GO:0031974;membrane-enclosed lumen;1.79723499739946e-56!GO:0031090;organelle membrane;3.09965920327917e-53!GO:0005840;ribosome;4.7038347264484e-51!GO:0005634;nucleus;2.83726389800985e-50!GO:0044428;nuclear part;3.35035872967534e-49!GO:0003723;RNA binding;7.66922049294418e-49!GO:0019538;protein metabolic process;1.63946313963377e-48!GO:0006412;translation;2.53449534453292e-46!GO:0003735;structural constituent of ribosome;1.0545305436491e-45!GO:0044429;mitochondrial part;4.42235320496233e-44!GO:0009058;biosynthetic process;3.70583902422228e-43!GO:0043234;protein complex;8.67762189914298e-43!GO:0044260;cellular macromolecule metabolic process;9.02071502295235e-43!GO:0016043;cellular component organization and biogenesis;3.24152567586861e-42!GO:0044267;cellular protein metabolic process;3.74703138871181e-42!GO:0009059;macromolecule biosynthetic process;2.80287014756487e-39!GO:0033279;ribosomal subunit;4.14914789727742e-39!GO:0033036;macromolecule localization;1.41635674690526e-38!GO:0015031;protein transport;4.29713542214463e-38!GO:0044249;cellular biosynthetic process;3.22346433582907e-37!GO:0031967;organelle envelope;4.18189942533947e-37!GO:0031975;envelope;9.93327868102289e-37!GO:0008104;protein localization;2.28420021637583e-36!GO:0045184;establishment of protein localization;6.81582046225777e-36!GO:0005829;cytosol;2.48999174203171e-35!GO:0043283;biopolymer metabolic process;1.00457485047508e-34!GO:0043228;non-membrane-bound organelle;4.33451861450334e-33!GO:0043232;intracellular non-membrane-bound organelle;4.33451861450334e-33!GO:0006396;RNA processing;3.10851541090854e-32!GO:0031981;nuclear lumen;3.67969946346741e-30!GO:0005740;mitochondrial envelope;1.51061607306068e-29!GO:0006996;organelle organization and biogenesis;2.95268382780828e-29!GO:0046907;intracellular transport;3.25216859158811e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.27376865625741e-29!GO:0065003;macromolecular complex assembly;1.0496048369018e-28!GO:0031966;mitochondrial membrane;6.7589748098069e-28!GO:0010467;gene expression;1.95041954292138e-27!GO:0019866;organelle inner membrane;5.97673339547468e-27!GO:0022607;cellular component assembly;4.00111005732628e-26!GO:0016071;mRNA metabolic process;6.43900847086567e-26!GO:0005743;mitochondrial inner membrane;2.79899541925118e-25!GO:0006886;intracellular protein transport;1.11383987124318e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.5596542014984e-24!GO:0008380;RNA splicing;7.20381828730793e-24!GO:0044445;cytosolic part;3.43136319013104e-23!GO:0006397;mRNA processing;5.68509958809984e-22!GO:0012505;endomembrane system;7.16290629491363e-22!GO:0006119;oxidative phosphorylation;1.08264285009213e-20!GO:0015934;large ribosomal subunit;1.75365392962885e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.33755567745872e-20!GO:0006259;DNA metabolic process;6.34765691266592e-20!GO:0015935;small ribosomal subunit;1.14132789921854e-19!GO:0044455;mitochondrial membrane part;1.24327669561515e-19!GO:0005783;endoplasmic reticulum;3.95991552015406e-19!GO:0005794;Golgi apparatus;6.07438811398105e-19!GO:0051649;establishment of cellular localization;2.22282938681351e-18!GO:0051641;cellular localization;4.01738493357723e-18!GO:0005654;nucleoplasm;5.09898838027952e-18!GO:0005681;spliceosome;1.26630315923216e-17!GO:0031980;mitochondrial lumen;2.93982469866356e-17!GO:0005759;mitochondrial matrix;2.93982469866356e-17!GO:0048770;pigment granule;3.2584455647551e-17!GO:0042470;melanosome;3.2584455647551e-17!GO:0005746;mitochondrial respiratory chain;5.22192498828649e-17!GO:0044432;endoplasmic reticulum part;5.74567652223802e-17!GO:0007049;cell cycle;6.98255320782946e-17!GO:0006457;protein folding;7.54400169895086e-17!GO:0016874;ligase activity;1.3822033815108e-16!GO:0043412;biopolymer modification;6.46672094886807e-16!GO:0044451;nucleoplasm part;2.10311561899571e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.30750679048129e-15!GO:0008134;transcription factor binding;3.56133318237236e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.3996751114769e-15!GO:0003954;NADH dehydrogenase activity;4.3996751114769e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.3996751114769e-15!GO:0006464;protein modification process;8.44422235165202e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.89232048357378e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.10360564141228e-14!GO:0016462;pyrophosphatase activity;4.27242481789248e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.27354283893483e-14!GO:0051186;cofactor metabolic process;4.98469527876305e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;5.39381896367408e-14!GO:0006512;ubiquitin cycle;7.73288385438584e-14!GO:0005761;mitochondrial ribosome;1.33665124278717e-13!GO:0000313;organellar ribosome;1.33665124278717e-13!GO:0022402;cell cycle process;2.14980531445712e-13!GO:0000166;nucleotide binding;2.65781014741704e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.7102227573383e-13!GO:0042773;ATP synthesis coupled electron transport;2.7102227573383e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.35006065775451e-13!GO:0017111;nucleoside-triphosphatase activity;4.97748530522332e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.1029590168051e-13!GO:0045271;respiratory chain complex I;5.1029590168051e-13!GO:0005747;mitochondrial respiratory chain complex I;5.1029590168051e-13!GO:0022618;protein-RNA complex assembly;6.83243558321686e-13!GO:0005730;nucleolus;1.41366617920115e-12!GO:0044265;cellular macromolecule catabolic process;1.4680667419012e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.66843403003532e-12!GO:0043285;biopolymer catabolic process;2.01776524425636e-12!GO:0000278;mitotic cell cycle;4.46581633639452e-12!GO:0048193;Golgi vesicle transport;6.94692820812717e-12!GO:0006605;protein targeting;7.0103996500218e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.40355141115893e-12!GO:0005789;endoplasmic reticulum membrane;9.43397318701156e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.41744873564519e-11!GO:0009057;macromolecule catabolic process;1.76167021290021e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;2.06246709913255e-11!GO:0016192;vesicle-mediated transport;2.32357528470341e-11!GO:0044248;cellular catabolic process;2.63582181206005e-11!GO:0043687;post-translational protein modification;2.80032505982292e-11!GO:0044257;cellular protein catabolic process;3.37771685687761e-11!GO:0019941;modification-dependent protein catabolic process;3.52440053364234e-11!GO:0043632;modification-dependent macromolecule catabolic process;3.52440053364234e-11!GO:0006511;ubiquitin-dependent protein catabolic process;4.03225564714077e-11!GO:0051082;unfolded protein binding;5.26632994113408e-11!GO:0003676;nucleic acid binding;5.90163749562219e-11!GO:0006732;coenzyme metabolic process;7.53188408494834e-11!GO:0030163;protein catabolic process;1.09826593427222e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.61869939232151e-10!GO:0008135;translation factor activity, nucleic acid binding;3.26943544056531e-10!GO:0032553;ribonucleotide binding;4.16159244497449e-10!GO:0032555;purine ribonucleotide binding;4.16159244497449e-10!GO:0051276;chromosome organization and biogenesis;5.20021626541575e-10!GO:0012501;programmed cell death;7.22135666298257e-10!GO:0006915;apoptosis;9.694420866522e-10!GO:0044431;Golgi apparatus part;1.03955014267505e-09!GO:0006323;DNA packaging;1.2081540597631e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.27473054652171e-09!GO:0000375;RNA splicing, via transesterification reactions;1.27473054652171e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.27473054652171e-09!GO:0005793;ER-Golgi intermediate compartment;1.5186931792419e-09!GO:0008639;small protein conjugating enzyme activity;2.47077054289709e-09!GO:0003712;transcription cofactor activity;2.66577847469667e-09!GO:0006461;protein complex assembly;2.84990675233609e-09!GO:0009055;electron carrier activity;3.38964800371524e-09!GO:0022403;cell cycle phase;3.83922658203352e-09!GO:0016070;RNA metabolic process;3.94280260805455e-09!GO:0017076;purine nucleotide binding;3.94406352276697e-09!GO:0000074;regulation of progression through cell cycle;3.97280966875366e-09!GO:0051726;regulation of cell cycle;4.11490303387483e-09!GO:0044427;chromosomal part;4.64346509066278e-09!GO:0004842;ubiquitin-protein ligase activity;5.7813328836445e-09!GO:0006974;response to DNA damage stimulus;8.86134327000331e-09!GO:0016740;transferase activity;8.86134327000331e-09!GO:0005694;chromosome;9.29111604261418e-09!GO:0005768;endosome;1.01466182373197e-08!GO:0008219;cell death;1.12974188271089e-08!GO:0016265;death;1.12974188271089e-08!GO:0019787;small conjugating protein ligase activity;1.1818469910742e-08!GO:0008565;protein transporter activity;1.19302493568485e-08!GO:0005635;nuclear envelope;1.26192659431237e-08!GO:0005524;ATP binding;1.51861703487142e-08!GO:0009259;ribonucleotide metabolic process;1.85211943533179e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.86253145399568e-08!GO:0032559;adenyl ribonucleotide binding;2.80393410941007e-08!GO:0065004;protein-DNA complex assembly;3.00727659953057e-08!GO:0006333;chromatin assembly or disassembly;3.24305786192324e-08!GO:0003743;translation initiation factor activity;4.04628362016876e-08!GO:0048475;coated membrane;4.16833880117634e-08!GO:0030117;membrane coat;4.16833880117634e-08!GO:0009150;purine ribonucleotide metabolic process;5.37790797456069e-08!GO:0006163;purine nucleotide metabolic process;5.46415796054749e-08!GO:0000785;chromatin;5.46415796054749e-08!GO:0006413;translational initiation;5.52991102061319e-08!GO:0006446;regulation of translational initiation;5.78698927449844e-08!GO:0007067;mitosis;5.88278456951209e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.99978804689659e-08!GO:0031965;nuclear membrane;7.59958875535304e-08!GO:0030120;vesicle coat;7.66578942417836e-08!GO:0030662;coated vesicle membrane;7.66578942417836e-08!GO:0000087;M phase of mitotic cell cycle;7.67114477288789e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.95260735405646e-08!GO:0030532;small nuclear ribonucleoprotein complex;9.7648001254086e-08!GO:0042254;ribosome biogenesis and assembly;1.0710044443582e-07!GO:0051188;cofactor biosynthetic process;1.19403643218215e-07!GO:0016881;acid-amino acid ligase activity;1.54931530606151e-07!GO:0006399;tRNA metabolic process;1.57639830128782e-07!GO:0009060;aerobic respiration;1.58614808483885e-07!GO:0005788;endoplasmic reticulum lumen;1.72622721070327e-07!GO:0009260;ribonucleotide biosynthetic process;1.88461498870417e-07!GO:0016604;nuclear body;2.01207983223895e-07!GO:0000139;Golgi membrane;2.28827108448892e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.31977519580524e-07!GO:0006164;purine nucleotide biosynthetic process;2.42381003796976e-07!GO:0006334;nucleosome assembly;2.47309596454996e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.56997233463309e-07!GO:0030554;adenyl nucleotide binding;3.16553126129558e-07!GO:0006913;nucleocytoplasmic transport;3.26071218052593e-07!GO:0009141;nucleoside triphosphate metabolic process;3.45428848133862e-07!GO:0031497;chromatin assembly;4.17418529440083e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.18091111337636e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.18091111337636e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.33529683159456e-07!GO:0006281;DNA repair;4.51293526055445e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.52805096550426e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.52805096550426e-07!GO:0015986;ATP synthesis coupled proton transport;4.76662616078174e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.76662616078174e-07!GO:0005773;vacuole;4.85830085627849e-07!GO:0031252;leading edge;5.11382038324728e-07!GO:0007005;mitochondrion organization and biogenesis;5.15704669176217e-07!GO:0051169;nuclear transport;5.38773010718239e-07!GO:0044453;nuclear membrane part;6.92297226691785e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.47712680840297e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.47712680840297e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.67896158363099e-07!GO:0009056;catabolic process;8.71431898821425e-07!GO:0003924;GTPase activity;8.79633104982917e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.07051450259897e-07!GO:0004812;aminoacyl-tRNA ligase activity;9.07051450259897e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.07051450259897e-07!GO:0006793;phosphorus metabolic process;9.23349854716069e-07!GO:0006796;phosphate metabolic process;9.23349854716069e-07!GO:0009719;response to endogenous stimulus;9.98490537755042e-07!GO:0048523;negative regulation of cellular process;1.19850193409758e-06!GO:0006366;transcription from RNA polymerase II promoter;1.31379092742286e-06!GO:0045333;cellular respiration;1.34270594596473e-06!GO:0017038;protein import;1.47138973869958e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.58815536608287e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.12352257850732e-06!GO:0051301;cell division;2.25880069500848e-06!GO:0043038;amino acid activation;2.71050464514213e-06!GO:0006418;tRNA aminoacylation for protein translation;2.71050464514213e-06!GO:0043039;tRNA aminoacylation;2.71050464514213e-06!GO:0019829;cation-transporting ATPase activity;2.87459250224449e-06!GO:0051246;regulation of protein metabolic process;2.98967966923482e-06!GO:0031988;membrane-bound vesicle;3.24643499328398e-06!GO:0000279;M phase;3.41985033656872e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.58981872054947e-06!GO:0009117;nucleotide metabolic process;3.80927686627982e-06!GO:0065002;intracellular protein transport across a membrane;3.84596264019759e-06!GO:0042981;regulation of apoptosis;4.08977443959124e-06!GO:0046034;ATP metabolic process;4.11936535273276e-06!GO:0042623;ATPase activity, coupled;4.61149375165259e-06!GO:0008654;phospholipid biosynthetic process;4.62283751977426e-06!GO:0043067;regulation of programmed cell death;4.95014061562358e-06!GO:0016607;nuclear speck;5.0746933150648e-06!GO:0031982;vesicle;5.13427859111578e-06!GO:0005770;late endosome;5.2960691643341e-06!GO:0044440;endosomal part;5.30565890394053e-06!GO:0010008;endosome membrane;5.30565890394053e-06!GO:0045259;proton-transporting ATP synthase complex;5.62545612720114e-06!GO:0006754;ATP biosynthetic process;5.95950025109463e-06!GO:0006753;nucleoside phosphate metabolic process;5.95950025109463e-06!GO:0006099;tricarboxylic acid cycle;6.10526105228359e-06!GO:0046356;acetyl-CoA catabolic process;6.10526105228359e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.19041488579639e-06!GO:0031410;cytoplasmic vesicle;6.28210463800318e-06!GO:0015630;microtubule cytoskeleton;6.90852697418072e-06!GO:0006260;DNA replication;7.51909232605097e-06!GO:0005798;Golgi-associated vesicle;8.97701323340183e-06!GO:0003714;transcription corepressor activity;9.12042176779353e-06!GO:0000323;lytic vacuole;9.18290168158033e-06!GO:0005764;lysosome;9.18290168158033e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.41739489881605e-06!GO:0032446;protein modification by small protein conjugation;9.44646625161351e-06!GO:0016887;ATPase activity;1.11181214393249e-05!GO:0016853;isomerase activity;1.13376135668821e-05!GO:0006084;acetyl-CoA metabolic process;1.21545525956122e-05!GO:0005762;mitochondrial large ribosomal subunit;1.31447900348899e-05!GO:0000315;organellar large ribosomal subunit;1.31447900348899e-05!GO:0016567;protein ubiquitination;1.3179121471402e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.39214253276551e-05!GO:0051329;interphase of mitotic cell cycle;1.41181366336938e-05!GO:0009108;coenzyme biosynthetic process;1.57505128531995e-05!GO:0043623;cellular protein complex assembly;1.64638382009811e-05!GO:0005905;coated pit;1.71538839291873e-05!GO:0006916;anti-apoptosis;2.09654333817496e-05!GO:0051325;interphase;2.23364080105355e-05!GO:0031324;negative regulation of cellular metabolic process;2.23684224858186e-05!GO:0048519;negative regulation of biological process;2.24350756036282e-05!GO:0016310;phosphorylation;2.29260504229909e-05!GO:0005643;nuclear pore;2.62095667436771e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.88163576279349e-05!GO:0016859;cis-trans isomerase activity;3.06514362221509e-05!GO:0006364;rRNA processing;3.18275115026826e-05!GO:0016568;chromatin modification;3.20905607481817e-05!GO:0050794;regulation of cellular process;3.70531633222401e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.0171642756522e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.02870456647383e-05!GO:0009109;coenzyme catabolic process;4.07847901810814e-05!GO:0043069;negative regulation of programmed cell death;4.7260087758098e-05!GO:0003697;single-stranded DNA binding;4.79362234521591e-05!GO:0006752;group transfer coenzyme metabolic process;5.10745136629293e-05!GO:0016072;rRNA metabolic process;5.23776731887726e-05!GO:0051187;cofactor catabolic process;5.6875840222381e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.85768896540945e-05!GO:0016564;transcription repressor activity;6.08362453120835e-05!GO:0043066;negative regulation of apoptosis;6.34090225692917e-05!GO:0019843;rRNA binding;6.54247495855064e-05!GO:0030133;transport vesicle;7.67875230970602e-05!GO:0016491;oxidoreductase activity;7.76159489584541e-05!GO:0009892;negative regulation of metabolic process;9.34019207207868e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.41649688538334e-05!GO:0016563;transcription activator activity;9.41676045044186e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.64860505873737e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.64860505873737e-05!GO:0019899;enzyme binding;0.000100398672103604!GO:0030118;clathrin coat;0.00010207107020882!GO:0005667;transcription factor complex;0.00010215067264896!GO:0007010;cytoskeleton organization and biogenesis;0.000103465532756718!GO:0016779;nucleotidyltransferase activity;0.000107632664882793!GO:0000245;spliceosome assembly;0.000121977388023477!GO:0045454;cell redox homeostasis;0.000128268795252555!GO:0016126;sterol biosynthetic process;0.000151461430193378!GO:0003713;transcription coactivator activity;0.00015461820198388!GO:0000151;ubiquitin ligase complex;0.000159324983600539!GO:0045786;negative regulation of progression through cell cycle;0.000161263517637479!GO:0000786;nucleosome;0.000189113123990325!GO:0030867;rough endoplasmic reticulum membrane;0.000196747470153525!GO:0000314;organellar small ribosomal subunit;0.000203496751637003!GO:0005763;mitochondrial small ribosomal subunit;0.000203496751637003!GO:0046930;pore complex;0.000205380865412!GO:0015980;energy derivation by oxidation of organic compounds;0.0002076157854951!GO:0008092;cytoskeletal protein binding;0.000230440723271227!GO:0042802;identical protein binding;0.000230722255851295!GO:0030029;actin filament-based process;0.000235774979792496!GO:0046474;glycerophospholipid biosynthetic process;0.000245742641668748!GO:0005525;GTP binding;0.000257081629485566!GO:0008361;regulation of cell size;0.000259450435293455!GO:0004386;helicase activity;0.000261753016868289!GO:0007243;protein kinase cascade;0.000270094832127361!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000273859364905118!GO:0001558;regulation of cell growth;0.000317676955964702!GO:0004298;threonine endopeptidase activity;0.000322563022917433!GO:0030119;AP-type membrane coat adaptor complex;0.000322563022917433!GO:0016787;hydrolase activity;0.000324900469552146!GO:0016049;cell growth;0.000325616058831801!GO:0065009;regulation of a molecular function;0.000338538063912361!GO:0003899;DNA-directed RNA polymerase activity;0.000368326203300163!GO:0008250;oligosaccharyl transferase complex;0.000381113884140783!GO:0001726;ruffle;0.000387778132792788!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000438081903670914!GO:0043566;structure-specific DNA binding;0.000447513416667331!GO:0007264;small GTPase mediated signal transduction;0.000469491886634256!GO:0005791;rough endoplasmic reticulum;0.000475156754954885!GO:0050657;nucleic acid transport;0.000502555749303589!GO:0051236;establishment of RNA localization;0.000502555749303589!GO:0050658;RNA transport;0.000502555749303589!GO:0006403;RNA localization;0.000521711991287603!GO:0008026;ATP-dependent helicase activity;0.000530484772653366!GO:0006091;generation of precursor metabolites and energy;0.00056683888552254!GO:0030131;clathrin adaptor complex;0.000568669246082608!GO:0005048;signal sequence binding;0.000575657057205648!GO:0051170;nuclear import;0.00058965710609768!GO:0008610;lipid biosynthetic process;0.000596444656350759!GO:0051789;response to protein stimulus;0.000614567845640458!GO:0006986;response to unfolded protein;0.000614567845640458!GO:0030176;integral to endoplasmic reticulum membrane;0.000625477797703681!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000646683475015282!GO:0051427;hormone receptor binding;0.000692972682705831!GO:0006606;protein import into nucleus;0.000800850511067875!GO:0030132;clathrin coat of coated pit;0.000841514285288028!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00084926708244778!GO:0005769;early endosome;0.000857745831556557!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00088674656497122!GO:0019867;outer membrane;0.00088674656497122!GO:0006650;glycerophospholipid metabolic process;0.000893406032611785!GO:0030658;transport vesicle membrane;0.000906296938764571!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000906296938764571!GO:0006613;cotranslational protein targeting to membrane;0.000911995840561309!GO:0043681;protein import into mitochondrion;0.000911995840561309!GO:0005813;centrosome;0.000986200860108395!GO:0046467;membrane lipid biosynthetic process;0.00102141965117129!GO:0030027;lamellipodium;0.00103476025140362!GO:0018196;peptidyl-asparagine modification;0.00103934618129062!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00103934618129062!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00108290096868003!GO:0005885;Arp2/3 protein complex;0.00110943326376437!GO:0044262;cellular carbohydrate metabolic process;0.00112188946694798!GO:0031968;organelle outer membrane;0.00114649235711456!GO:0031902;late endosome membrane;0.00114972298554902!GO:0051252;regulation of RNA metabolic process;0.00118570188324549!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00121609472408577!GO:0046489;phosphoinositide biosynthetic process;0.00124485114095175!GO:0005741;mitochondrial outer membrane;0.00130682666281361!GO:0035257;nuclear hormone receptor binding;0.0013127974947221!GO:0043488;regulation of mRNA stability;0.00138070861419989!GO:0043487;regulation of RNA stability;0.00138070861419989!GO:0007006;mitochondrial membrane organization and biogenesis;0.00139947984706572!GO:0051920;peroxiredoxin activity;0.00140759826922258!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00147625854783555!GO:0006695;cholesterol biosynthetic process;0.00153440231383038!GO:0016481;negative regulation of transcription;0.00155426588639443!GO:0048471;perinuclear region of cytoplasm;0.00156818764804002!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00157570723869476!GO:0006414;translational elongation;0.00157592896607808!GO:0032561;guanyl ribonucleotide binding;0.00167153597197942!GO:0019001;guanyl nucleotide binding;0.00167153597197942!GO:0004576;oligosaccharyl transferase activity;0.00177419577624056!GO:0016044;membrane organization and biogenesis;0.00181510532341121!GO:0030659;cytoplasmic vesicle membrane;0.00190997141598576!GO:0048522;positive regulation of cellular process;0.00203361711169368!GO:0043021;ribonucleoprotein binding;0.00204510232681288!GO:0006839;mitochondrial transport;0.00204510232681288!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00207309900102832!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00224336390208633!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00224336390208633!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00224336390208633!GO:0040008;regulation of growth;0.00230440910517095!GO:0030125;clathrin vesicle coat;0.00230993306376738!GO:0030665;clathrin coated vesicle membrane;0.00230993306376738!GO:0005815;microtubule organizing center;0.00243421843555371!GO:0006626;protein targeting to mitochondrion;0.00245532291561771!GO:0030384;phosphoinositide metabolic process;0.0027693539997081!GO:0030660;Golgi-associated vesicle membrane;0.00290786872516382!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0030142370276309!GO:0009165;nucleotide biosynthetic process;0.00334395350617701!GO:0005774;vacuolar membrane;0.00336463299502091!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00350717086637322!GO:0005819;spindle;0.00350891056032599!GO:0050789;regulation of biological process;0.00382724248401199!GO:0006509;membrane protein ectodomain proteolysis;0.00382790787216386!GO:0033619;membrane protein proteolysis;0.00382790787216386!GO:0048487;beta-tubulin binding;0.00412213354425213!GO:0017166;vinculin binding;0.00412475971778095!GO:0007040;lysosome organization and biogenesis;0.00426800760606263!GO:0006402;mRNA catabolic process;0.00460105243370952!GO:0006891;intra-Golgi vesicle-mediated transport;0.00487335911487275!GO:0051028;mRNA transport;0.00492569063552431!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00492569063552431!GO:0015002;heme-copper terminal oxidase activity;0.00492569063552431!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00492569063552431!GO:0004129;cytochrome-c oxidase activity;0.00492569063552431!GO:0006979;response to oxidative stress;0.0050207559835741!GO:0005684;U2-dependent spliceosome;0.00506113076698528!GO:0031301;integral to organelle membrane;0.00525329108422911!GO:0005874;microtubule;0.00529781726401757!GO:0044433;cytoplasmic vesicle part;0.00532057550787702!GO:0003724;RNA helicase activity;0.00550355279571626!GO:0009967;positive regulation of signal transduction;0.00605126290901696!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00605126290901696!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00605126290901696!GO:0030663;COPI coated vesicle membrane;0.00621855581588836!GO:0030126;COPI vesicle coat;0.00621855581588836!GO:0003684;damaged DNA binding;0.00626671346321699!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00626671346321699!GO:0030880;RNA polymerase complex;0.00626671346321699!GO:0030137;COPI-coated vesicle;0.00636903808952195!GO:0043284;biopolymer biosynthetic process;0.00648248046858102!GO:0007088;regulation of mitosis;0.00658116146877212!GO:0006643;membrane lipid metabolic process;0.00683253088787861!GO:0051168;nuclear export;0.00695676868389354!GO:0050790;regulation of catalytic activity;0.00700400105084956!GO:0045936;negative regulation of phosphate metabolic process;0.00707062872879562!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00709695163903881!GO:0030031;cell projection biogenesis;0.00734060050522612!GO:0005869;dynactin complex;0.00745591246826091!GO:0016197;endosome transport;0.00758284279930947!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00865566810957068!GO:0015399;primary active transmembrane transporter activity;0.00865566810957068!GO:0044437;vacuolar part;0.00879087186664791!GO:0007033;vacuole organization and biogenesis;0.0087990249310388!GO:0031072;heat shock protein binding;0.00888637117412965!GO:0006082;organic acid metabolic process;0.00916996835098613!GO:0006779;porphyrin biosynthetic process;0.00916996835098613!GO:0033014;tetrapyrrole biosynthetic process;0.00916996835098613!GO:0007265;Ras protein signal transduction;0.00917449617246941!GO:0006778;porphyrin metabolic process;0.0102274656226693!GO:0033013;tetrapyrrole metabolic process;0.0102274656226693!GO:0019752;carboxylic acid metabolic process;0.0102590412724958!GO:0003729;mRNA binding;0.0103615665309101!GO:0006289;nucleotide-excision repair;0.0105046962432564!GO:0008033;tRNA processing;0.0107153653531904!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0107548746708783!GO:0006612;protein targeting to membrane;0.011081043018862!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0111144081772157!GO:0016311;dephosphorylation;0.0111370159667889!GO:0030145;manganese ion binding;0.0115573512388725!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0115573512388725!GO:0030134;ER to Golgi transport vesicle;0.0115829914282509!GO:0006506;GPI anchor biosynthetic process;0.0116145025329826!GO:0000082;G1/S transition of mitotic cell cycle;0.0120470846304533!GO:0016301;kinase activity;0.0121903754946329!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0131591575456856!GO:0000428;DNA-directed RNA polymerase complex;0.0131591575456856!GO:0006818;hydrogen transport;0.0132194022477004!GO:0003711;transcription elongation regulator activity;0.0132254800258139!GO:0006644;phospholipid metabolic process;0.0135508563833139!GO:0045892;negative regulation of transcription, DNA-dependent;0.0137074853414391!GO:0008139;nuclear localization sequence binding;0.0137166314223286!GO:0016125;sterol metabolic process;0.0139471486649734!GO:0031529;ruffle organization and biogenesis;0.0140793905603022!GO:0005862;muscle thin filament tropomyosin;0.0140932698819284!GO:0005765;lysosomal membrane;0.0142605729566814!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0142932879594604!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0145609916433566!GO:0035258;steroid hormone receptor binding;0.014570710648263!GO:0005637;nuclear inner membrane;0.014926532828506!GO:0022890;inorganic cation transmembrane transporter activity;0.0152612397038828!GO:0012506;vesicle membrane;0.0154402643000912!GO:0030833;regulation of actin filament polymerization;0.0154753369402191!GO:0015992;proton transport;0.0157487464789392!GO:0035035;histone acetyltransferase binding;0.0158731032950576!GO:0006458;'de novo' protein folding;0.0159026571410585!GO:0051084;'de novo' posttranslational protein folding;0.0159026571410585!GO:0016363;nuclear matrix;0.0164456551492241!GO:0015631;tubulin binding;0.016838522909763!GO:0045792;negative regulation of cell size;0.0170411412673724!GO:0006740;NADPH regeneration;0.0174367043980842!GO:0006098;pentose-phosphate shunt;0.0174367043980842!GO:0030127;COPII vesicle coat;0.0174367043980842!GO:0012507;ER to Golgi transport vesicle membrane;0.0174367043980842!GO:0042326;negative regulation of phosphorylation;0.0174596982539252!GO:0008186;RNA-dependent ATPase activity;0.0176475235918567!GO:0006595;polyamine metabolic process;0.0178528554249911!GO:0046483;heterocycle metabolic process;0.017992931779055!GO:0006505;GPI anchor metabolic process;0.0184938634098538!GO:0030308;negative regulation of cell growth;0.0186295258614455!GO:0040029;regulation of gene expression, epigenetic;0.0187754373980144!GO:0043154;negative regulation of caspase activity;0.0189094996304676!GO:0051128;regulation of cellular component organization and biogenesis;0.0193467785314778!GO:0005657;replication fork;0.0193467785314778!GO:0008022;protein C-terminus binding;0.019466780460072!GO:0000059;protein import into nucleus, docking;0.020128865297478!GO:0008637;apoptotic mitochondrial changes;0.0201881132757825!GO:0006783;heme biosynthetic process;0.0206376048323807!GO:0051287;NAD binding;0.0206480362508073!GO:0016272;prefoldin complex;0.0209846681712453!GO:0005856;cytoskeleton;0.0214968049262552!GO:0008286;insulin receptor signaling pathway;0.0215976620526944!GO:0000075;cell cycle checkpoint;0.021713193843119!GO:0006401;RNA catabolic process;0.022743234473984!GO:0045334;clathrin-coated endocytic vesicle;0.0228727266135294!GO:0051087;chaperone binding;0.0230494570862272!GO:0000209;protein polyubiquitination;0.0230494570862272!GO:0042168;heme metabolic process;0.0231251949076433!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0232414683854757!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0233834711143249!GO:0004177;aminopeptidase activity;0.0242083971371322!GO:0045941;positive regulation of transcription;0.0248151269793238!GO:0051101;regulation of DNA binding;0.0252039671952991!GO:0051098;regulation of binding;0.0257090030153761!GO:0004674;protein serine/threonine kinase activity;0.0265137679153357!GO:0045926;negative regulation of growth;0.0267284313024125!GO:0045893;positive regulation of transcription, DNA-dependent;0.0269637443433742!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0272171819545476!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0272171819545476!GO:0010257;NADH dehydrogenase complex assembly;0.0272171819545476!GO:0033108;mitochondrial respiratory chain complex assembly;0.0272171819545476!GO:0006066;alcohol metabolic process;0.0275472541208289!GO:0006383;transcription from RNA polymerase III promoter;0.0275472541208289!GO:0030521;androgen receptor signaling pathway;0.0277315214717894!GO:0046426;negative regulation of JAK-STAT cascade;0.0283995782928621!GO:0006497;protein amino acid lipidation;0.0294019618423719!GO:0000086;G2/M transition of mitotic cell cycle;0.0295647979770744!GO:0000049;tRNA binding;0.0300387724784053!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0301248672608032!GO:0007051;spindle organization and biogenesis;0.0301662713913593!GO:0008629;induction of apoptosis by intracellular signals;0.0315839654213781!GO:0048500;signal recognition particle;0.0318273257700368!GO:0016741;transferase activity, transferring one-carbon groups;0.0318622390391617!GO:0009100;glycoprotein metabolic process;0.0321823357581348!GO:0007050;cell cycle arrest;0.0325212073535671!GO:0001836;release of cytochrome c from mitochondria;0.0327702014558612!GO:0016791;phosphoric monoester hydrolase activity;0.0327745705149987!GO:0042158;lipoprotein biosynthetic process;0.033168119466547!GO:0008632;apoptotic program;0.0331906780418029!GO:0006520;amino acid metabolic process;0.0341308100244024!GO:0051085;chaperone cofactor-dependent protein folding;0.0342224833729408!GO:0005586;collagen type III;0.0344010102008078!GO:0004721;phosphoprotein phosphatase activity;0.0345121256694561!GO:0030128;clathrin coat of endocytic vesicle;0.0345121256694561!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0345121256694561!GO:0030122;AP-2 adaptor complex;0.0345121256694561!GO:0008168;methyltransferase activity;0.0348427881901716!GO:0048518;positive regulation of biological process;0.0348427881901716!GO:0031272;regulation of pseudopodium formation;0.0348427881901716!GO:0031269;pseudopodium formation;0.0348427881901716!GO:0031344;regulation of cell projection organization and biogenesis;0.0348427881901716!GO:0031268;pseudopodium organization and biogenesis;0.0348427881901716!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0348427881901716!GO:0031274;positive regulation of pseudopodium formation;0.0348427881901716!GO:0050811;GABA receptor binding;0.0348440763587812!GO:0016407;acetyltransferase activity;0.0350418489362923!GO:0005925;focal adhesion;0.0350794079449587!GO:0030140;trans-Golgi network transport vesicle;0.0350794079449587!GO:0003756;protein disulfide isomerase activity;0.0351782188247464!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0351782188247464!GO:0009112;nucleobase metabolic process;0.0353095840524022!GO:0006417;regulation of translation;0.0354245994041399!GO:0051338;regulation of transferase activity;0.0356055027887898!GO:0006518;peptide metabolic process;0.0356055027887898!GO:0045737;positive regulation of cyclin-dependent protein kinase activity;0.0361577954233257!GO:0006261;DNA-dependent DNA replication;0.0362574492484169!GO:0008094;DNA-dependent ATPase activity;0.0364415937434213!GO:0019222;regulation of metabolic process;0.0364490771764047!GO:0043492;ATPase activity, coupled to movement of substances;0.0372796386523671!GO:0033673;negative regulation of kinase activity;0.0375575769151519!GO:0006469;negative regulation of protein kinase activity;0.0375575769151519!GO:0004004;ATP-dependent RNA helicase activity;0.0377664048026206!GO:0032507;maintenance of cellular protein localization;0.0378748640146356!GO:0006220;pyrimidine nucleotide metabolic process;0.0378809877074307!GO:0008426;protein kinase C inhibitor activity;0.0383754403280965!GO:0046519;sphingoid metabolic process;0.0389688903279499!GO:0006611;protein export from nucleus;0.039810327052495!GO:0019904;protein domain specific binding;0.0400746752465907!GO:0016860;intramolecular oxidoreductase activity;0.0408192387458569!GO:0051348;negative regulation of transferase activity;0.0408988866980289!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0409024656016198!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.041192041385183!GO:0006284;base-excision repair;0.0414001097146383!GO:0044452;nucleolar part;0.0414055208455588!GO:0051235;maintenance of localization;0.041729758505746!GO:0045806;negative regulation of endocytosis;0.042640051744269!GO:0030508;thiol-disulfide exchange intermediate activity;0.0432401746766607!GO:0032508;DNA duplex unwinding;0.0433245587936771!GO:0032392;DNA geometric change;0.0433245587936771!GO:0046488;phosphatidylinositol metabolic process;0.0433245587936771!GO:0048468;cell development;0.0437591552002565!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0439055182010374!GO:0009116;nucleoside metabolic process;0.0441716478867774!GO:0043065;positive regulation of apoptosis;0.0442026207554028!GO:0030433;ER-associated protein catabolic process;0.0455047371319787!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0455047371319787!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.045722081500753!GO:0044438;microbody part;0.045722081500753!GO:0044439;peroxisomal part;0.045722081500753!GO:0007034;vacuolar transport;0.0460599386794119!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0474187419914504!GO:0008538;proteasome activator activity;0.0478052680131294!GO:0006470;protein amino acid dephosphorylation;0.047914618965256!GO:0048144;fibroblast proliferation;0.047914618965256!GO:0048145;regulation of fibroblast proliferation;0.047914618965256!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0484245769313643!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0484245769313643!GO:0043068;positive regulation of programmed cell death;0.0487882806598586!GO:0003746;translation elongation factor activity;0.0490373938973429!GO:0050178;phenylpyruvate tautomerase activity;0.0493036456254549!GO:0004860;protein kinase inhibitor activity;0.0493823453137912
|sample_id=11694
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=amnion
|top_motifs=XCPE1{core}:1.53674754509;ZNF148:1.52209059906;GLI1..3:1.51983168826;HOX{A5,B5}:1.48791360227;TBX4,5:1.40573919308;TFAP2{A,C}:1.36466803148;PPARG:1.28786191579;ZNF384:1.18700600414;SNAI1..3:1.16856693471;TEAD1:1.16557186504;HAND1,2:1.15448351;TP53:1.1316013646;GCM1,2:1.12250261649;RXRA_VDR{dimer}:1.06058676707;NKX2-3_NKX2-5:1.0034362069;ZIC1..3:0.998438497153;ZEB1:0.961685713455;ESR1:0.957588297953;ZNF238:0.925954674568;TFCP2:0.925828218554;PAX5:0.851574327757;MAZ:0.814529889232;RORA:0.787188976705;ZNF423:0.743003101218;ONECUT1,2:0.721788499931;EBF1:0.701473310778;GTF2A1,2:0.666635767025;SP1:0.608880259542;RXR{A,B,G}:0.605552690968;EN1,2:0.593833450697;NR3C1:0.593709407667;UFEwm:0.549230857341;HIC1:0.544437571352;TFAP4:0.527575063696;NKX2-1,4:0.520752052723;POU2F1..3:0.511877881684;KLF4:0.492740341906;PAX1,9:0.450436390731;FOXM1:0.408946932193;TEF:0.406642930457;AIRE:0.392252949831;NR6A1:0.385615347069;HMX1:0.363527533386;TLX1..3_NFIC{dimer}:0.335919203689;TFAP2B:0.324368788639;CDC5L:0.320929022798;TOPORS:0.292452193526;LEF1_TCF7_TCF7L1,2:0.288595127876;FOS_FOS{B,L1}_JUN{B,D}:0.282314957258;NKX2-2,8:0.276818880895;AR:0.267271196223;TBP:0.265294886283;GFI1:0.262371449251;BACH2:0.252530877672;HOX{A4,D4}:0.249659532524;PAX8:0.220199126732;SPZ1:0.199450806085;GTF2I:0.196864592596;SOX17:0.195985755573;ESRRA:0.194919850092;LHX3,4:0.184858865004;NR1H4:0.182232179558;EP300:0.173834555565;MYOD1:0.163692968274;PAX4:0.156448122172;PBX1:0.155443867252;FOXL1:0.144270045797;GZF1:0.140051510076;FOSL2:0.134831605829;MTF1:0.120038802132;ZBTB6:0.116901200603;HLF:0.113088384533;DBP:0.104407668854;STAT5{A,B}:0.0878200468676;XBP1:0.0587518567664;ALX4:0.0563700767953;RREB1:0.052565976189;POU6F1:0.0398163359755;JUN:0.0306027373729;POU3F1..4:0.0271250530946;HOX{A6,A7,B6,B7}:0.0101948048975;IKZF1:-0.0195291727023;E2F1..5:-0.0328691369932;NR5A1,2:-0.0397315541223;bHLH_family:-0.0414607877052;SRF:-0.0429405422841;HNF1A:-0.0599697216976;MED-1{core}:-0.0657970741867;GATA6:-0.093709307229;HOXA9_MEIS1:-0.100279750956;NFY{A,B,C}:-0.111508604428;MTE{core}:-0.121433361237;TFDP1:-0.139156179026;TLX2:-0.145681835194;ADNP_IRX_SIX_ZHX:-0.149016191352;SOX5:-0.151067577175;ARID5B:-0.172984766627;PITX1..3:-0.175325967891;NFE2:-0.184605544475;HIF1A:-0.19878144875;EVI1:-0.199174027431;NHLH1,2:-0.211599363006;NFE2L2:-0.21984856909;SOX{8,9,10}:-0.236287061;POU1F1:-0.24717091501;HNF4A_NR2F1,2:-0.252687587502;FOXQ1:-0.256029836923;PATZ1:-0.270406401887;SOX2:-0.284422414623;GFI1B:-0.29914963702;TAL1_TCF{3,4,12}:-0.315014309544;NFKB1_REL_RELA:-0.325404806901;MYB:-0.331993390376;SMAD1..7,9:-0.339148869133;MYBL2:-0.356127366115;MZF1:-0.399006395902;LMO2:-0.400947676061;NANOG:-0.403656972144;ZNF143:-0.423862039431;ATF2:-0.425053957558;EGR1..3:-0.431045400604;MEF2{A,B,C,D}:-0.442219985187;ATF6:-0.445932260271;FOXA2:-0.455500435254;NKX3-2:-0.464268722372;NFIL3:-0.472179505181;YY1:-0.473658015279;REST:-0.483634888438;CRX:-0.485439916459;ETS1,2:-0.500393964222;PAX3,7:-0.504493607401;FOXO1,3,4:-0.509501882895;RFX1:-0.525833091159;OCT4_SOX2{dimer}:-0.541178202365;PAX2:-0.552008857014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.552725509891;HES1:-0.57326997151;RUNX1..3:-0.576928796521;NANOG{mouse}:-0.581306991857;PRDM1:-0.619724380925;PRRX1,2:-0.658694830473;HSF1,2:-0.658713675096;HMGA1,2:-0.661700517696;SPIB:-0.697216570111;SPI1:-0.715836716724;STAT1,3:-0.767347346259;ALX1:-0.770417732673;CEBPA,B_DDIT3:-0.776309424636;NFATC1..3:-0.777762213459;NKX3-1:-0.797280996909;CUX2:-0.828442633748;BPTF:-0.838314724721;GATA4:-0.843601288986;ELF1,2,4:-0.849672329996;PAX6:-0.857834486857;NFE2L1:-0.882576647637;MYFfamily:-0.911995761634;ATF4:-0.915872908765;FOX{F1,F2,J1}:-0.929965779313;STAT2,4,6:-0.951333763112;IRF7:-0.969604906356;FOXP3:-0.971277081219;ZFP161:-0.976687482818;FOXP1:-0.988768634406;FOX{D1,D2}:-0.9911030218;IRF1,2:-0.9962683546;ELK1,4_GABP{A,B1}:-1.01914917802;T:-1.03069711942;BREu{core}:-1.05689508999;PDX1:-1.11381616301;MAFB:-1.11589990084;NRF1:-1.11777604671;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.11854336393;FOXN1:-1.13912382776;CREB1:-1.14727122929;POU5F1:-1.15589914486;ATF5_CREB3:-1.17973897803;FOX{I1,J2}:-1.18082304304;VSX1,2:-1.1867744281;CDX1,2,4:-1.20128068883;NFIX:-1.22205767616;SREBF1,2:-1.26316140077;FOXD3:-1.27433855325;RFX2..5_RFXANK_RFXAP:-1.36344589014;DMAP1_NCOR{1,2}_SMARC:-1.42352091116;ZBTB16:-1.53171023763;TGIF1:-1.54944332069;AHR_ARNT_ARNT2:-1.67445318792;NKX6-1,2:-1.70836102965;IKZF2:-1.82422795265;HBP1_HMGB_SSRP1_UBTF:-1.83272350626;RBPJ:-1.881991576
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11694-123A2;search_select_hide=table117:FF:11694-123A2
}}
}}

Latest revision as of 18:15, 4 June 2020

Name:Amniotic Epithelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12125
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueamnion
dev stageNA
sexNA
ageNA
cell typeamniotic epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005453
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12125 CAGE DRX008109 DRR008981
Accession ID Hg19

Library idBAMCTSS
CNhs12125 DRZ000406 DRZ001791
Accession ID Hg38

Library idBAMCTSS
CNhs12125 DRZ011756 DRZ013141
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005453
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.GTGAAA sRNA-Seq DRX037064 DRR041430
Accession ID Hg19

Library idBAMCTSS
SRhi10005.GTGAAA DRZ007072


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0972
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.528
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.072
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0646
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.371
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.199
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.184
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.262
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.62
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.032
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.256
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.102
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.253
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.243
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.433
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.639
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.313
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.471
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.739
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12125

Jaspar motifP-value
MA0002.20.683
MA0003.10.329
MA0004.10.603
MA0006.10.0699
MA0007.10.0117
MA0009.10.607
MA0014.10.747
MA0017.10.66
MA0018.20.0151
MA0019.10.242
MA0024.10.141
MA0025.10.0257
MA0027.10.733
MA0028.10.0225
MA0029.10.0672
MA0030.10.0203
MA0031.10.0169
MA0035.20.228
MA0038.10.339
MA0039.20.126
MA0040.10.302
MA0041.10.75
MA0042.10.415
MA0043.17.24482e-4
MA0046.10.798
MA0047.20.424
MA0048.10.96
MA0050.11.80754e-6
MA0051.11.24616e-6
MA0052.10.569
MA0055.10.0446
MA0057.10.336
MA0058.10.281
MA0059.10.726
MA0060.10.464
MA0061.10.712
MA0062.28.79378e-6
MA0065.20.173
MA0066.10.138
MA0067.10.00613
MA0068.10.208
MA0069.10.401
MA0070.10.0245
MA0071.10.484
MA0072.10.675
MA0073.10.407
MA0074.10.364
MA0076.15.29519e-4
MA0077.10.587
MA0078.10.501
MA0079.20.445
MA0080.24.77093e-8
MA0081.17.38018e-4
MA0083.10.768
MA0084.10.298
MA0087.10.842
MA0088.10.567
MA0090.11.99227e-4
MA0091.10.197
MA0092.10.304
MA0093.10.47
MA0099.20.00121
MA0100.10.24
MA0101.10.167
MA0102.22.042e-4
MA0103.10.00339
MA0104.20.144
MA0105.10.89
MA0106.10.228
MA0107.10.115
MA0108.20.291
MA0111.10.613
MA0112.20.016
MA0113.10.00699
MA0114.10.324
MA0115.10.304
MA0116.10.534
MA0117.10.288
MA0119.10.221
MA0122.10.94
MA0124.10.771
MA0125.10.335
MA0131.10.452
MA0135.10.696
MA0136.18.98397e-10
MA0137.20.00426
MA0138.20.424
MA0139.10.914
MA0140.10.595
MA0141.10.354
MA0142.10.682
MA0143.10.25
MA0144.10.986
MA0145.10.143
MA0146.10.0327
MA0147.10.259
MA0148.10.976
MA0149.10.816
MA0150.10.481
MA0152.10.871
MA0153.10.46
MA0154.10.277
MA0155.10.126
MA0156.16.95269e-7
MA0157.10.0152
MA0159.10.323
MA0160.10.784
MA0162.10.0399
MA0163.10.168
MA0164.10.143
MA0258.10.0877
MA0259.10.141



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12125

Novel motifP-value
10.806
100.781
1000.758
1010.641
1020.75
1030.21
1040.868
1050.252
1060.00442
1070.0102
1080.119
1090.0553
110.255
1100.138
1110.701
1120.779
1130.00653
1140.575
1150.567
1160.412
1170.34
1180.433
1190.155
120.952
1200.191
1210.553
1220.741
1230.664
1240.239
1250.505
1260.407
1270.505
1280.0847
1290.407
130.341
1300.631
1310.0168
1320.177
1330.298
1340.21
1350.496
1360.554
1370.113
1380.616
1390.871
140.792
1400.282
1410.674
1420.154
1430.828
1440.558
1450.441
1460.113
1470.156
1480.161
1490.0673
150.83
1500.221
1510.256
1520.0272
1530.212
1540.757
1550.467
1560.437
1570.415
1580.723
1590.539
160.0677
1600.0635
1610.307
1620.202
1630.93
1640.708
1650.998
1660.644
1670.273
1680.524
1690.0468
170.0672
180.147
190.272
20.0957
200.919
210.803
220.159
230.115
240.676
250.96
260.152
270.306
280.915
290.492
30.56
300.22
310.499
321.30338e-6
330.518
340.367
350.359
360.299
370.336
380.436
390.224
40.514
400.0368
410.996
420.83
430.196
440.217
450.138
460.334
470.669
480.201
490.194
50.928
500.404
510.215
520.224
530.821
540.226
550.132
560.32
570.459
580.7
590.0605
60.485
600.305
610.709
620.928
630.298
640.139
650.161
660.328
670.429
680.276
690.00233
70.613
700.0572
710.379
720.83
730.0339
740.0741
750.392
760.446
770.0165
780.496
790.0455
80.2
800.909
810.908
820.354
830.756
840.411
850.118
860.657
870.627
880.167
890.129
90.46
900.13
910.0987
920.456
930.5
940.398
950.144
960.918
970.341
980.591
990.00677



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12125


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002536 (amniotic epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000009 (human amniotic epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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