FF:10721-110A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005185 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005185 | |||
|accession_numbers=CAGE;DRX007914;DRR008786;DRZ000211;DRZ001596;DRZ011561;DRZ012946 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057137;DRR062896;DRZ007972 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID:7 | |ancestors_in_disease_facet=DOID:4,DOID:7 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100067,FF:0103192,FF:0100678 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100067 | |fonse_cell_line=FF:0100067 | ||
|fonse_cell_line_closure=FF:0100067 | |fonse_cell_line_closure=FF:0100067 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10721-110A1 | |id=FF:10721-110A1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100678 | ||
|name=leiomyoblastoma | |is_obsolete= | ||
|library_id=CNhs11848 | |||
|library_id_phase_based=2:CNhs11848 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10721 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10721 | |||
|name=leiomyoblastoma cell line:G-402 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11848,LSID830,release010,COMPLETED | |profile_hcage=CNhs11848,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.0983905284693096,0,0.0182379582094833,0,-0.136300494454532,-0.104262228958362,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290703001705771,0,0.45476515266029,0,0,0,-0.0979578962680575,0,0,0.0455993985170071,0,0,0,0,0,0,0,0,0,0,0.0983905284693096,0,0.0563454592099166,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.149212063438208,0,0,0.0812123610827724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0215729120337236,0,0,0,0,0.0691146182529763,0.230141382987665,0,0,0,0,0.000355177231603152,0.162766343158091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304658680247626,0.178555988295869,0,0,0,-0.0496384083715535,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.000355177231603152,0,0,0,0,0,0,0,0,0,0,0,0.196847136768635,0,-0.295530230456139,0.212767520713688,0.0491952642346548,0,-0.168785655201117,0,0,0,0,0.0983905284693096,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0.0491952642346548,0,0.0983905284693096,0,0.0477885262458138,0.561211608839067,0,0.00388327046907028,-0.0683442610773682,0,0,0,0,0.142579205951919,0,-0.120879483793741,0.095835819972452,0.0983905284693096,0.162124237794,-0.04680465889238,0,0,0,-0.555789393471902,-0.839822925097019,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.135621429229338,0.115364736947627,0,0.274816604275589,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.080784171998156,0,0,0,0,-0.241687781622443,0.178555988295869,0,-0.373286155956567,-0.0234275518040478,0,-0.00127324018874508,0,-0.302389727009913,-0.115290724846008,-0.0554161586660715,-0.0266654353112149,-0.147401849371139,-0.189981719549847,0,0.184195829668913,0.241574376063508,0.181986595143839,-0.0438303846852723,0.0909582828483173,-0.0272384836312241,-0.0916893567623829,0,0,0,-0.185708461345755,0,0.0261424583582321,-0.311558726180904,0.270023520253143,0.544084654114139,0.10140854077575,0.06423775395567,0.179245388394236,0.00966273577798425,-0.0134104408423957,0.0688743988162057,0.0286552135010424,0.0940243635208524,0,0.0853338192442412,0.000791523469936995,-0.206476781215648,0.460943379067096,0.009314085805626,0.150045222869929,-0.0683442610773682,0,0.250919838515924,0.224792085520702,0,-0.102707641068472,0.223287317468763,0,0,0,0,0,0.239557503443283,-0.293287718349353,-0.0542995732596754,0,0.028391745354742,0.0491952642346548,0.0439682285456141,0,0.0517678865272704,-0.0476193689880846,0,0.0749162634258187,0,0.0100705532081417,-0.252635856893914,0.0135652919568666,0.36189223750602,0.549139264054194,-0.0256099114140836,-0.128945325858651,0.0691146182529763,-0.788939864790226,0,-0.0881268324752877,0,-0.88354475051838,-0.679498131621524,0.0730594028201379,-0.2540589345178,0,-0.0182933863160863,0,-0.239878110103784,0,0.0157464292585258,-0.0583969473246746,-0.439289374580686,-0.00738463908097398,0,0.172774930470692,-0.271144074357066,0.00326818506744142,0.142503146709452,-0.0740744507508092,0.0983905284693096,0.29365892871956,0.168987873224892,-0.162455163629935,0.0333080198958667,0,0.170704130549963,0,0,0.469729534947056,0.0107283869164242,0,0.0309963294829212,-0.0922160507964881,0.054725898228249,0.0625849148609353,0,0,-0.0662650121010503,0,0,0.0989339585436172,-0.0469099258696273,0.182281224381541,0.102956321750404,0.0876258624745595,-0.108622809454255,0,0,0.00102822233069372,0,0.257899868195514,0,0,0.360873389105714,0,0,0,0,0.0735458070311335,0,0,0,0,0,0,0,0.219824799239735,0.0891926818377511,0,0,0,0,0,0,0,-0.129406115216345,0,0,-1.41377485052381,0.0282271461674493,0.0555385726194491,0,0,0,0,0.0304810221273383,-0.0246805737988544,0.0983905284693096,-0.131862706497632,0,0,0,0,0.270141673447949,0,0,0.0491952642346548,0,-0.057730457053664,-0.121457517041472,0,0,0,0.0793282616353697,0,0,0,0,0.169713244806583,0,0,-0.270210015633309,0,0.031064924790223,0.702705163350916,0,-0.340143230702604,0.0621913592731271,0.553452556626187,0,0,0.557795740362851,0,0,0.0121376806102258,0,0.246204424680813,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0.178555988295869,0,0,0,0,0,-0.150925786260399,0.00616647181079916,0.171264420386996,0,0,0,0,0,0,0.0989961892615035,0.0290754235407484,0,0,0,0,0,0,0,0,0.045560923753666,0,0,0,0,0,0.149212063438208,0,0,0,0,-0.208524457916724,0,0,0.356660552487396,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.136300494454532,0,0.0983905284693096,0,0,0,0,0,-0.176442769736781,0,0,0,0,0.0646716145868922,0,0,0,-0.104796384789156,0,0.0182379582094833,0.0983905284693096,0,0,0,0,0.00243112109572269,0.0491952642346548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.092197141718668,0.0317113875335669,-0.0410030912920968,-0.00112975915270741,0,0,0.253724370703798,0,0,0,0,0,0,0.0178548402061277,0.0862884387178776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178555988295869,0,0,0,0,0,0,0.0061648587430384,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0597945851996794,-0.160118187482741,0.0913193889243335,0,0,0,-0.054385572482455,0,0,0.057478913712262,0,0.0316131410504082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290703001705771,0,0,0,0,0,0,0,0,0,0,0,0,0.152360931905772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0151839009592382,0,0,0,0,0,0,0,0,0.0491952642346548,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0183720602006712,0,0,0,0.4458557097665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111557996466514,0,0,0,0,0,0,0,0,0.0983905284693096,0,0,0,0,-0.0482220752390542,0,0.0941793560658423,0,0,0,0,0,0.0983905284693096,0,0,0,0,0,0,0,0,0,0.178555988295869,-0.0335171790988043,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.00184949634608153,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.155220079819196,0,0,0.0563454592099166,0,0,0.0491952642346548,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 79: | ||
|rna_tube_id=110A1 | |rna_tube_id=110A1 | ||
|rna_weight_ug=47.09071 | |rna_weight_ug=47.09071 | ||
|rnaseq_library_id=RDhi10080 | |||
|sample_age=9 months | |sample_age=9 months | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-1440 | |sample_cell_catalog=CRL-1440 | ||
|sample_cell_line=G-402 | |sample_cell_line=G-402 | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.41216346570063e-262!GO:0043226;organelle;1.37395608499265e-227!GO:0043229;intracellular organelle;3.23926171391575e-227!GO:0043231;intracellular membrane-bound organelle;1.78181644439658e-222!GO:0043227;membrane-bound organelle;2.10092205869378e-222!GO:0044422;organelle part;4.08823503241265e-178!GO:0044446;intracellular organelle part;1.02199920214442e-176!GO:0005737;cytoplasm;3.27457335356655e-170!GO:0044444;cytoplasmic part;2.65747858834694e-130!GO:0032991;macromolecular complex;1.88424279344877e-117!GO:0030529;ribonucleoprotein complex;6.39663720825887e-100!GO:0005634;nucleus;1.33652055801578e-98!GO:0044237;cellular metabolic process;1.56576900488797e-94!GO:0044238;primary metabolic process;1.36712227492148e-92!GO:0043233;organelle lumen;3.30736281389647e-90!GO:0031974;membrane-enclosed lumen;3.30736281389647e-90!GO:0044428;nuclear part;5.09866357375533e-89!GO:0043170;macromolecule metabolic process;7.09239635002106e-89!GO:0003723;RNA binding;1.04807196319386e-87!GO:0005739;mitochondrion;7.09747250098789e-77!GO:0006396;RNA processing;8.82693393354695e-62!GO:0043234;protein complex;8.80671714189803e-59!GO:0005840;ribosome;3.74622531089447e-58!GO:0005515;protein binding;5.52623650247587e-58!GO:0031981;nuclear lumen;1.30224751869122e-54!GO:0043283;biopolymer metabolic process;2.83062271035494e-53!GO:0006412;translation;4.52480207156147e-53!GO:0044429;mitochondrial part;4.10067028345489e-52!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.40223631885252e-52!GO:0031090;organelle membrane;2.17409962098215e-51!GO:0016043;cellular component organization and biogenesis;1.09786958438487e-50!GO:0003735;structural constituent of ribosome;5.50683209861267e-50!GO:0010467;gene expression;2.43974354174337e-48!GO:0043228;non-membrane-bound organelle;1.64718215066444e-46!GO:0043232;intracellular non-membrane-bound organelle;1.64718215066444e-46!GO:0031967;organelle envelope;1.75347475698528e-46!GO:0016071;mRNA metabolic process;2.71838351335689e-46!GO:0031975;envelope;4.24155661372783e-46!GO:0006259;DNA metabolic process;4.36796646469076e-46!GO:0019538;protein metabolic process;1.81663461811922e-45!GO:0033279;ribosomal subunit;7.865464309738e-43!GO:0044260;cellular macromolecule metabolic process;9.11480583771013e-42!GO:0044267;cellular protein metabolic process;9.6598770562434e-42!GO:0008380;RNA splicing;2.08089962793226e-41!GO:0006996;organelle organization and biogenesis;3.08111652533384e-41!GO:0006397;mRNA processing;5.27977869248303e-40!GO:0044249;cellular biosynthetic process;2.38634643283197e-39!GO:0015031;protein transport;1.92525769807535e-38!GO:0009059;macromolecule biosynthetic process;2.57394113050319e-38!GO:0033036;macromolecule localization;5.85866441539554e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.92682961840585e-37!GO:0046907;intracellular transport;4.99257437112598e-37!GO:0009058;biosynthetic process;6.26124243003242e-37!GO:0005829;cytosol;2.49043844112e-36!GO:0003676;nucleic acid binding;5.04672771311426e-35!GO:0045184;establishment of protein localization;6.37129528989761e-35!GO:0008104;protein localization;7.8034052480451e-34!GO:0065003;macromolecular complex assembly;3.82074927264829e-33!GO:0005740;mitochondrial envelope;2.59316703422363e-32!GO:0005654;nucleoplasm;5.61389441507288e-31!GO:0007049;cell cycle;5.61389441507288e-31!GO:0019866;organelle inner membrane;5.76378063139741e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.00474759888002e-31!GO:0000166;nucleotide binding;9.30672232007507e-31!GO:0031966;mitochondrial membrane;4.52280737673264e-30!GO:0022607;cellular component assembly;2.29977192374983e-29!GO:0005681;spliceosome;4.54808294948368e-29!GO:0005743;mitochondrial inner membrane;1.32926567627536e-28!GO:0006974;response to DNA damage stimulus;1.15366081904709e-27!GO:0006886;intracellular protein transport;2.20076295607449e-27!GO:0005730;nucleolus;5.33368746610245e-26!GO:0051649;establishment of cellular localization;7.98512902027125e-26!GO:0051641;cellular localization;2.47717678743919e-25!GO:0044451;nucleoplasm part;2.48478197961501e-25!GO:0044445;cytosolic part;2.65308418064638e-25!GO:0017111;nucleoside-triphosphatase activity;6.22346718774694e-25!GO:0016462;pyrophosphatase activity;7.25940508323898e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.83504624200286e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;1.36115132424982e-24!GO:0031980;mitochondrial lumen;5.55645550448075e-24!GO:0005759;mitochondrial matrix;5.55645550448075e-24!GO:0005694;chromosome;1.48088092795857e-23!GO:0016070;RNA metabolic process;2.57259978351448e-23!GO:0006281;DNA repair;3.34448130308506e-23!GO:0000278;mitotic cell cycle;4.873018717931e-23!GO:0015934;large ribosomal subunit;7.46271382217596e-23!GO:0022402;cell cycle process;8.74042694858992e-23!GO:0006457;protein folding;1.85794672201295e-22!GO:0051276;chromosome organization and biogenesis;3.76461790138878e-22!GO:0006119;oxidative phosphorylation;8.56076619437709e-22!GO:0044455;mitochondrial membrane part;1.32378924508125e-21!GO:0015935;small ribosomal subunit;3.60269393494762e-21!GO:0032553;ribonucleotide binding;9.08541505466475e-21!GO:0032555;purine ribonucleotide binding;9.08541505466475e-21!GO:0044427;chromosomal part;1.168454550517e-20!GO:0000087;M phase of mitotic cell cycle;3.143456340351e-20!GO:0017076;purine nucleotide binding;3.36241606588287e-20!GO:0022618;protein-RNA complex assembly;3.44844920039556e-20!GO:0016874;ligase activity;4.49575320168527e-20!GO:0006512;ubiquitin cycle;4.8538769519588e-20!GO:0006260;DNA replication;5.14990302465281e-20!GO:0007067;mitosis;6.85765504503586e-20!GO:0012505;endomembrane system;3.30186532091392e-19!GO:0022403;cell cycle phase;8.63621297624076e-19!GO:0016887;ATPase activity;3.39079397439531e-18!GO:0005524;ATP binding;5.01197837869824e-18!GO:0051301;cell division;5.92202235823198e-18!GO:0032559;adenyl ribonucleotide binding;7.76231878920726e-18!GO:0000279;M phase;1.27913505914615e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.52054905642122e-17!GO:0044265;cellular macromolecule catabolic process;1.55245377651733e-17!GO:0009719;response to endogenous stimulus;2.04385290394529e-17!GO:0042254;ribosome biogenesis and assembly;2.64445220720486e-17!GO:0030554;adenyl nucleotide binding;4.03444553254438e-17!GO:0043285;biopolymer catabolic process;4.13520702004365e-17!GO:0006323;DNA packaging;7.46173011159578e-17!GO:0042623;ATPase activity, coupled;7.71300663924283e-17!GO:0031965;nuclear membrane;1.82773215605682e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.50695645695125e-16!GO:0008135;translation factor activity, nucleic acid binding;4.06055273451294e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;4.06055273451294e-16!GO:0000375;RNA splicing, via transesterification reactions;4.06055273451294e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.06055273451294e-16!GO:0005746;mitochondrial respiratory chain;4.29848614220369e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.3645637035087e-16!GO:0005761;mitochondrial ribosome;4.87118064955207e-16!GO:0000313;organellar ribosome;4.87118064955207e-16!GO:0005783;endoplasmic reticulum;4.90440600575336e-16!GO:0009057;macromolecule catabolic process;6.16851811651235e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.08844449425023e-15!GO:0051082;unfolded protein binding;1.52206033580111e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.66161398951874e-15!GO:0003954;NADH dehydrogenase activity;1.66161398951874e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.66161398951874e-15!GO:0044453;nuclear membrane part;1.97771801059428e-15!GO:0019941;modification-dependent protein catabolic process;1.97771801059428e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.97771801059428e-15!GO:0044257;cellular protein catabolic process;2.50969256408991e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.35182984278795e-15!GO:0044248;cellular catabolic process;4.29471239509793e-15!GO:0006605;protein targeting;7.70852789263945e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.93239945872334e-15!GO:0005635;nuclear envelope;1.6872096879021e-14!GO:0044432;endoplasmic reticulum part;1.98699849859796e-14!GO:0006399;tRNA metabolic process;4.2008622596693e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.67741867257431e-14!GO:0051186;cofactor metabolic process;6.33227155989945e-14!GO:0048193;Golgi vesicle transport;6.33535669027381e-14!GO:0016604;nuclear body;6.77789892018806e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.29922856347929e-13!GO:0042773;ATP synthesis coupled electron transport;1.29922856347929e-13!GO:0030163;protein catabolic process;1.37633829563665e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.08116322920106e-13!GO:0045271;respiratory chain complex I;2.08116322920106e-13!GO:0005747;mitochondrial respiratory chain complex I;2.08116322920106e-13!GO:0005643;nuclear pore;3.65083064235103e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.65559003520136e-13!GO:0004386;helicase activity;9.1200000107156e-13!GO:0043412;biopolymer modification;1.09324684694378e-12!GO:0008134;transcription factor binding;1.42693132174356e-12!GO:0003743;translation initiation factor activity;1.57831323915549e-12!GO:0006333;chromatin assembly or disassembly;2.91975437188017e-12!GO:0048770;pigment granule;2.91975437188017e-12!GO:0042470;melanosome;2.91975437188017e-12!GO:0006413;translational initiation;3.51145264727259e-12!GO:0006403;RNA localization;3.72469550147792e-12!GO:0050657;nucleic acid transport;4.04810803219574e-12!GO:0051236;establishment of RNA localization;4.04810803219574e-12!GO:0050658;RNA transport;4.04810803219574e-12!GO:0016568;chromatin modification;6.68605516477116e-12!GO:0008026;ATP-dependent helicase activity;7.44835581476132e-12!GO:0006364;rRNA processing;1.03615596620399e-11!GO:0015630;microtubule cytoskeleton;1.23577111512822e-11!GO:0065002;intracellular protein transport across a membrane;1.55865417140395e-11!GO:0016607;nuclear speck;1.82431921189392e-11!GO:0006446;regulation of translational initiation;2.19378537672186e-11!GO:0000785;chromatin;2.34168765999564e-11!GO:0046930;pore complex;2.72002067923406e-11!GO:0005794;Golgi apparatus;2.90726023273718e-11!GO:0016072;rRNA metabolic process;2.92894021789249e-11!GO:0065004;protein-DNA complex assembly;3.26067894145038e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.99054504055159e-11!GO:0006261;DNA-dependent DNA replication;9.55005304899166e-11!GO:0006913;nucleocytoplasmic transport;9.69763653507394e-11!GO:0000074;regulation of progression through cell cycle;1.19929709191321e-10!GO:0051726;regulation of cell cycle;1.30739091722238e-10!GO:0006464;protein modification process;1.74906727287098e-10!GO:0006732;coenzyme metabolic process;1.94330162545886e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.17124355793323e-10!GO:0008565;protein transporter activity;2.42537203778158e-10!GO:0051169;nuclear transport;2.47673232079952e-10!GO:0016192;vesicle-mediated transport;2.51720238503037e-10!GO:0009259;ribonucleotide metabolic process;2.60478492624123e-10!GO:0006163;purine nucleotide metabolic process;2.89056686042311e-10!GO:0051028;mRNA transport;3.31928711142019e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.86008711964247e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.86008711964247e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.86008711964247e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.75177106494278e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.81147379213381e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.15221181833422e-09!GO:0006164;purine nucleotide biosynthetic process;1.20956746690293e-09!GO:0008639;small protein conjugating enzyme activity;1.21874816415726e-09!GO:0043038;amino acid activation;2.0256021397474e-09!GO:0006418;tRNA aminoacylation for protein translation;2.0256021397474e-09!GO:0043039;tRNA aminoacylation;2.0256021397474e-09!GO:0003697;single-stranded DNA binding;2.10506730021508e-09!GO:0004842;ubiquitin-protein ligase activity;2.49260260476532e-09!GO:0000775;chromosome, pericentric region;2.66635372635514e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.72232660219981e-09!GO:0005789;endoplasmic reticulum membrane;2.74973049513633e-09!GO:0009056;catabolic process;2.79510745858097e-09!GO:0009260;ribonucleotide biosynthetic process;2.90049001635324e-09!GO:0009150;purine ribonucleotide metabolic process;3.15490433180317e-09!GO:0019787;small conjugating protein ligase activity;4.11054103154666e-09!GO:0043566;structure-specific DNA binding;7.24611235649074e-09!GO:0043687;post-translational protein modification;7.29708540145752e-09!GO:0016881;acid-amino acid ligase activity;1.22450024470227e-08!GO:0005819;spindle;1.33441708251605e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.35694497090871e-08!GO:0017038;protein import;1.52826248227181e-08!GO:0009055;electron carrier activity;1.56350426836341e-08!GO:0003712;transcription cofactor activity;1.64813620537897e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.7285166596224e-08!GO:0031497;chromatin assembly;2.0567898160489e-08!GO:0016779;nucleotidyltransferase activity;2.3494076815056e-08!GO:0005788;endoplasmic reticulum lumen;2.8351144686173e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.26985712451628e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.62757520981352e-08!GO:0009060;aerobic respiration;3.80775454314931e-08!GO:0006334;nucleosome assembly;7.40718555439962e-08!GO:0007005;mitochondrion organization and biogenesis;7.66710973548919e-08!GO:0005768;endosome;7.79436159683703e-08!GO:0000245;spliceosome assembly;8.11611761579279e-08!GO:0005813;centrosome;8.97560148575088e-08!GO:0006461;protein complex assembly;9.07528477326246e-08!GO:0009199;ribonucleoside triphosphate metabolic process;9.09355684657753e-08!GO:0006366;transcription from RNA polymerase II promoter;9.72066413316828e-08!GO:0009141;nucleoside triphosphate metabolic process;9.98506669725568e-08!GO:0019829;cation-transporting ATPase activity;1.05715322450234e-07!GO:0005815;microtubule organizing center;1.1241677798971e-07!GO:0005793;ER-Golgi intermediate compartment;1.1863619172932e-07!GO:0051188;cofactor biosynthetic process;1.26740462454849e-07!GO:0015986;ATP synthesis coupled proton transport;1.33019227586896e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.33019227586896e-07!GO:0016787;hydrolase activity;1.3739626846607e-07!GO:0043623;cellular protein complex assembly;1.54168527869108e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.63479110230202e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.63479110230202e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.63948967702019e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.73901118752999e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.73901118752999e-07!GO:0016740;transferase activity;2.44542777652968e-07!GO:0003899;DNA-directed RNA polymerase activity;2.93058498272558e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.29510376183523e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.29510376183523e-07!GO:0000151;ubiquitin ligase complex;3.72639518178797e-07!GO:0045259;proton-transporting ATP synthase complex;3.85265278290002e-07!GO:0007051;spindle organization and biogenesis;4.45284249618172e-07!GO:0005667;transcription factor complex;4.49231765773782e-07!GO:0000075;cell cycle checkpoint;5.08495683306075e-07!GO:0045333;cellular respiration;5.77660461990749e-07!GO:0009117;nucleotide metabolic process;5.9553110487473e-07!GO:0046034;ATP metabolic process;6.11055702701683e-07!GO:0032446;protein modification by small protein conjugation;7.46992833263179e-07!GO:0012501;programmed cell death;8.94310527568055e-07!GO:0006754;ATP biosynthetic process;9.06640927196385e-07!GO:0006753;nucleoside phosphate metabolic process;9.06640927196385e-07!GO:0006915;apoptosis;1.11055363580049e-06!GO:0044431;Golgi apparatus part;1.16425233589527e-06!GO:0016567;protein ubiquitination;1.89925927463935e-06!GO:0030120;vesicle coat;1.9519444855084e-06!GO:0030662;coated vesicle membrane;1.9519444855084e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.1727776111318e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.17694499441359e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.31532787981907e-06!GO:0008094;DNA-dependent ATPase activity;2.42664406975439e-06!GO:0016859;cis-trans isomerase activity;2.60114048029843e-06!GO:0006099;tricarboxylic acid cycle;3.84142207548635e-06!GO:0046356;acetyl-CoA catabolic process;3.84142207548635e-06!GO:0005762;mitochondrial large ribosomal subunit;4.20958215195144e-06!GO:0000315;organellar large ribosomal subunit;4.20958215195144e-06!GO:0005798;Golgi-associated vesicle;4.47587530101067e-06!GO:0006752;group transfer coenzyme metabolic process;4.47587530101067e-06!GO:0003724;RNA helicase activity;4.70703388061075e-06!GO:0048475;coated membrane;5.38043426450057e-06!GO:0030117;membrane coat;5.38043426450057e-06!GO:0006084;acetyl-CoA metabolic process;6.7503170235272e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.78033670988226e-06!GO:0044452;nucleolar part;7.26167142287461e-06!GO:0008219;cell death;7.4328756908932e-06!GO:0016265;death;7.4328756908932e-06!GO:0051427;hormone receptor binding;7.9668580409217e-06!GO:0008033;tRNA processing;7.98312486570019e-06!GO:0044440;endosomal part;8.17710417647511e-06!GO:0010008;endosome membrane;8.17710417647511e-06!GO:0005657;replication fork;8.32822631913279e-06!GO:0009108;coenzyme biosynthetic process;8.80238574068741e-06!GO:0051329;interphase of mitotic cell cycle;9.68544381343006e-06!GO:0006613;cotranslational protein targeting to membrane;1.08397130219317e-05!GO:0006302;double-strand break repair;1.09921953338299e-05!GO:0051187;cofactor catabolic process;1.1411091204859e-05!GO:0003684;damaged DNA binding;1.19536806211554e-05!GO:0003682;chromatin binding;1.25407495797004e-05!GO:0035257;nuclear hormone receptor binding;1.67095561823761e-05!GO:0051052;regulation of DNA metabolic process;1.8071306989788e-05!GO:0016741;transferase activity, transferring one-carbon groups;2.0991007288925e-05!GO:0008168;methyltransferase activity;2.1542490575962e-05!GO:0006606;protein import into nucleus;2.24523696989032e-05!GO:0003924;GTPase activity;2.33410566871114e-05!GO:0031324;negative regulation of cellular metabolic process;2.43008380471832e-05!GO:0051170;nuclear import;2.43294897463368e-05!GO:0009109;coenzyme catabolic process;2.59266529556573e-05!GO:0000786;nucleosome;3.05338659729883e-05!GO:0000314;organellar small ribosomal subunit;3.05338659729883e-05!GO:0005763;mitochondrial small ribosomal subunit;3.05338659729883e-05!GO:0003729;mRNA binding;3.61595371264205e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.72215686788728e-05!GO:0015399;primary active transmembrane transporter activity;3.72215686788728e-05!GO:0005525;GTP binding;3.79849369971779e-05!GO:0043021;ribonucleoprotein binding;4.30533632821163e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.35115469759454e-05!GO:0016853;isomerase activity;4.46660029395808e-05!GO:0005770;late endosome;4.58492494718029e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.08239162322181e-05!GO:0000776;kinetochore;5.15046734079583e-05!GO:0051168;nuclear export;5.17445106084979e-05!GO:0005874;microtubule;5.72397746930624e-05!GO:0051789;response to protein stimulus;6.04935892482575e-05!GO:0006986;response to unfolded protein;6.04935892482575e-05!GO:0051325;interphase;6.51994060601802e-05!GO:0000139;Golgi membrane;6.57658547628014e-05!GO:0006383;transcription from RNA polymerase III promoter;8.06779826997091e-05!GO:0008654;phospholipid biosynthetic process;8.22974925291439e-05!GO:0051246;regulation of protein metabolic process;8.47538502001427e-05!GO:0000059;protein import into nucleus, docking;8.51504972488626e-05!GO:0048523;negative regulation of cellular process;9.1962696394749e-05!GO:0016363;nuclear matrix;9.45317946962078e-05!GO:0006839;mitochondrial transport;0.000102041156606936!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000103479915832509!GO:0045454;cell redox homeostasis;0.000108878033753057!GO:0007017;microtubule-based process;0.000115354161777597!GO:0045786;negative regulation of progression through cell cycle;0.000115354161777597!GO:0003713;transcription coactivator activity;0.000120688634691965!GO:0016491;oxidoreductase activity;0.000120688634691965!GO:0006626;protein targeting to mitochondrion;0.000120688634691965!GO:0016563;transcription activator activity;0.000123046215921996!GO:0006352;transcription initiation;0.000136076183420471!GO:0006310;DNA recombination;0.00014064521613703!GO:0050794;regulation of cellular process;0.000143675493333314!GO:0009165;nucleotide biosynthetic process;0.00014795710427844!GO:0003678;DNA helicase activity;0.000149804840583475!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000152939033181735!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000154211803130439!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000171278862145281!GO:0006275;regulation of DNA replication;0.000179431341846565!GO:0004298;threonine endopeptidase activity;0.000192980203917775!GO:0005048;signal sequence binding;0.000206660050160776!GO:0006402;mRNA catabolic process;0.000216024863643127!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00022659337548155!GO:0009892;negative regulation of metabolic process;0.000234774992016174!GO:0008186;RNA-dependent ATPase activity;0.0002547648201852!GO:0006338;chromatin remodeling;0.000255769610447937!GO:0006414;translational elongation;0.000265607711721232!GO:0030880;RNA polymerase complex;0.000274664310012814!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000290132913027398!GO:0043492;ATPase activity, coupled to movement of substances;0.000333575451268991!GO:0019222;regulation of metabolic process;0.00033736092592281!GO:0007052;mitotic spindle organization and biogenesis;0.00033736092592281!GO:0006401;RNA catabolic process;0.000344080725942211!GO:0031124;mRNA 3'-end processing;0.000361152550372266!GO:0015980;energy derivation by oxidation of organic compounds;0.000397354541490371!GO:0007088;regulation of mitosis;0.000403173755452864!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000426630015131092!GO:0043681;protein import into mitochondrion;0.00043054834816437!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000434372905147001!GO:0008250;oligosaccharyl transferase complex;0.000435780124486414!GO:0004576;oligosaccharyl transferase activity;0.000451790532891994!GO:0003690;double-stranded DNA binding;0.000456601502655972!GO:0007059;chromosome segregation;0.000474883383253562!GO:0032561;guanyl ribonucleotide binding;0.000495889818518144!GO:0019001;guanyl nucleotide binding;0.000495889818518144!GO:0006091;generation of precursor metabolites and energy;0.000510474040758548!GO:0031072;heat shock protein binding;0.000520456344316088!GO:0032508;DNA duplex unwinding;0.000549969130742975!GO:0032392;DNA geometric change;0.000549969130742975!GO:0051252;regulation of RNA metabolic process;0.000560204351705922!GO:0043069;negative regulation of programmed cell death;0.000570464604233068!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000599403831247896!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000601414104077601!GO:0030658;transport vesicle membrane;0.000633266595253029!GO:0005885;Arp2/3 protein complex;0.000656342400301532!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000673955028843093!GO:0000428;DNA-directed RNA polymerase complex;0.000673955028843093!GO:0004004;ATP-dependent RNA helicase activity;0.000697770050258451!GO:0006612;protein targeting to membrane;0.000707095241250633!GO:0043066;negative regulation of apoptosis;0.000709810827530696!GO:0007093;mitotic cell cycle checkpoint;0.000713663525988835!GO:0032259;methylation;0.000728024770257744!GO:0007010;cytoskeleton organization and biogenesis;0.000739454102025939!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000741549418139114!GO:0003714;transcription corepressor activity;0.000743872220991634!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000745893494906557!GO:0048519;negative regulation of biological process;0.000806087032924167!GO:0006793;phosphorus metabolic process;0.000824057541989768!GO:0006796;phosphate metabolic process;0.000824057541989768!GO:0019843;rRNA binding;0.000856737251205479!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000869404669191415!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000869404669191415!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000869404669191415!GO:0005769;early endosome;0.000920376105046521!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000926956036276368!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000926956036276368!GO:0016564;transcription repressor activity;0.00094523141474952!GO:0043414;biopolymer methylation;0.000947181578145911!GO:0043624;cellular protein complex disassembly;0.0010030979685969!GO:0042981;regulation of apoptosis;0.00101938855230874!GO:0018196;peptidyl-asparagine modification;0.00102055202074092!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00102055202074092!GO:0031968;organelle outer membrane;0.00102798326438116!GO:0043067;regulation of programmed cell death;0.00111157136580274!GO:0000082;G1/S transition of mitotic cell cycle;0.00116926760615051!GO:0005684;U2-dependent spliceosome;0.00117136244080598!GO:0031988;membrane-bound vesicle;0.00117599475967583!GO:0006284;base-excision repair;0.00118279529623728!GO:0016023;cytoplasmic membrane-bound vesicle;0.00127064281337657!GO:0019867;outer membrane;0.00127365149724154!GO:0016251;general RNA polymerase II transcription factor activity;0.0014200276220367!GO:0046474;glycerophospholipid biosynthetic process;0.00147476588650605!GO:0048471;perinuclear region of cytoplasm;0.00151751934164934!GO:0043488;regulation of mRNA stability;0.00154728217101287!GO:0043487;regulation of RNA stability;0.00154728217101287!GO:0006268;DNA unwinding during replication;0.00163863752180536!GO:0005876;spindle microtubule;0.00163863752180536!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00175048051298475!GO:0016310;phosphorylation;0.00175048051298475!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00178223503647358!GO:0048500;signal recognition particle;0.00179963045843463!GO:0030660;Golgi-associated vesicle membrane;0.00180614446314009!GO:0033116;ER-Golgi intermediate compartment membrane;0.0018097321992183!GO:0006611;protein export from nucleus;0.00182477836025981!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00184216215090911!GO:0031123;RNA 3'-end processing;0.00185816796760649!GO:0006405;RNA export from nucleus;0.00208441951882205!GO:0046483;heterocycle metabolic process;0.00213807073545424!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00224781969130778!GO:0005637;nuclear inner membrane;0.0022570048698292!GO:0009451;RNA modification;0.00228135903619932!GO:0000922;spindle pole;0.00228135903619932!GO:0000049;tRNA binding;0.00230473819533459!GO:0007006;mitochondrial membrane organization and biogenesis;0.00230921081483405!GO:0030134;ER to Golgi transport vesicle;0.00236425103199759!GO:0004518;nuclease activity;0.00249939300232838!GO:0006289;nucleotide-excision repair;0.00250097919541368!GO:0032984;macromolecular complex disassembly;0.00258291244872525!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00264937987162816!GO:0030867;rough endoplasmic reticulum membrane;0.00266389133079199!GO:0051920;peroxiredoxin activity;0.00267955205180446!GO:0005741;mitochondrial outer membrane;0.00271125516097692!GO:0015631;tubulin binding;0.00276149345587105!GO:0016197;endosome transport;0.00289892064116955!GO:0003711;transcription elongation regulator activity;0.00290240623582964!GO:0008312;7S RNA binding;0.00310265533121486!GO:0004527;exonuclease activity;0.00314381221390336!GO:0046489;phosphoinositide biosynthetic process;0.00322255002819463!GO:0006916;anti-apoptosis;0.00326829104555193!GO:0016407;acetyltransferase activity;0.00329034144025012!GO:0045045;secretory pathway;0.00331315952031515!GO:0043241;protein complex disassembly;0.0033188149645856!GO:0009303;rRNA transcription;0.00341124869011444!GO:0006497;protein amino acid lipidation;0.00365758166165942!GO:0051087;chaperone binding;0.00375789706025879!GO:0006378;mRNA polyadenylation;0.00383633551718763!GO:0008139;nuclear localization sequence binding;0.00393987352819743!GO:0016481;negative regulation of transcription;0.004293707608612!GO:0031570;DNA integrity checkpoint;0.00436073913467208!GO:0005773;vacuole;0.00467386497380588!GO:0006144;purine base metabolic process;0.00472712602730169!GO:0031252;leading edge;0.00477345990929607!GO:0042393;histone binding;0.00484734760264808!GO:0006270;DNA replication initiation;0.00497425995596084!GO:0000725;recombinational repair;0.00502381468160593!GO:0000724;double-strand break repair via homologous recombination;0.00502381468160593!GO:0043284;biopolymer biosynthetic process;0.00502558811122539!GO:0030133;transport vesicle;0.00507486349397254!GO:0032200;telomere organization and biogenesis;0.00513209927042824!GO:0000723;telomere maintenance;0.00513209927042824!GO:0031982;vesicle;0.00513335588199636!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00513335588199636!GO:0045047;protein targeting to ER;0.00513335588199636!GO:0008276;protein methyltransferase activity;0.0051522324382769!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00527316839341459!GO:0040029;regulation of gene expression, epigenetic;0.00527666366563416!GO:0030127;COPII vesicle coat;0.00532692347585195!GO:0012507;ER to Golgi transport vesicle membrane;0.00532692347585195!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00534765477429255!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00561583628822864!GO:0000339;RNA cap binding;0.00569814211912926!GO:0005595;collagen type XII;0.0057105906044298!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00587255854828748!GO:0031323;regulation of cellular metabolic process;0.00587946631919469!GO:0005669;transcription factor TFIID complex;0.00589993637901476!GO:0009116;nucleoside metabolic process;0.00620692894424975!GO:0019899;enzyme binding;0.00623129216923058!GO:0051053;negative regulation of DNA metabolic process;0.00664562151910788!GO:0006730;one-carbon compound metabolic process;0.00668818483991116!GO:0031410;cytoplasmic vesicle;0.00674104533183267!GO:0016584;nucleosome positioning;0.00723087848644162!GO:0042770;DNA damage response, signal transduction;0.00727243734532531!GO:0000209;protein polyubiquitination;0.0073312103158888!GO:0050789;regulation of biological process;0.00747783949714729!GO:0006595;polyamine metabolic process;0.00755284907518373!GO:0006350;transcription;0.00757483233524458!GO:0004003;ATP-dependent DNA helicase activity;0.00760636063272419!GO:0035258;steroid hormone receptor binding;0.00760636063272419!GO:0017166;vinculin binding;0.00836671959772023!GO:0005875;microtubule associated complex;0.00855011835770962!GO:0006778;porphyrin metabolic process;0.00859120494122488!GO:0033013;tetrapyrrole metabolic process;0.00859120494122488!GO:0006892;post-Golgi vesicle-mediated transport;0.00865265011776681!GO:0000070;mitotic sister chromatid segregation;0.0088563588211968!GO:0042158;lipoprotein biosynthetic process;0.00901407016807257!GO:0046966;thyroid hormone receptor binding;0.00906241819608894!GO:0000819;sister chromatid segregation;0.0091872238132083!GO:0046519;sphingoid metabolic process;0.00924055554566541!GO:0008022;protein C-terminus binding;0.00931797230327534!GO:0016272;prefoldin complex;0.00933634574114954!GO:0005832;chaperonin-containing T-complex;0.00980365582161388!GO:0005905;coated pit;0.0102611651459104!GO:0008180;signalosome;0.0104416746449072!GO:0046467;membrane lipid biosynthetic process;0.0104440938022947!GO:0000910;cytokinesis;0.0108028144126197!GO:0019752;carboxylic acid metabolic process;0.0116520962478995!GO:0043022;ribosome binding;0.0117118145312147!GO:0006082;organic acid metabolic process;0.0117118145312147!GO:0007050;cell cycle arrest;0.0117704982257059!GO:0000323;lytic vacuole;0.0119425594201858!GO:0005764;lysosome;0.0119425594201858!GO:0005758;mitochondrial intermembrane space;0.0119464704612851!GO:0022890;inorganic cation transmembrane transporter activity;0.0121241209390715!GO:0030118;clathrin coat;0.0131903564412969!GO:0008017;microtubule binding;0.0133874284722142!GO:0000152;nuclear ubiquitin ligase complex;0.0136186129235248!GO:0000077;DNA damage checkpoint;0.0136186129235248!GO:0030663;COPI coated vesicle membrane;0.0136738932007865!GO:0030126;COPI vesicle coat;0.0136738932007865!GO:0030521;androgen receptor signaling pathway;0.0139424850858321!GO:0000781;chromosome, telomeric region;0.0142134151666493!GO:0006400;tRNA modification;0.0142797275939112!GO:0051540;metal cluster binding;0.0142797275939112!GO:0051536;iron-sulfur cluster binding;0.0142797275939112!GO:0008213;protein amino acid alkylation;0.0143586065652696!GO:0006479;protein amino acid methylation;0.0143586065652696!GO:0006505;GPI anchor metabolic process;0.014423076133064!GO:0050662;coenzyme binding;0.0147875996168912!GO:0030137;COPI-coated vesicle;0.014868357813491!GO:0005862;muscle thin filament tropomyosin;0.0153629057489196!GO:0044262;cellular carbohydrate metabolic process;0.0154890140374568!GO:0006506;GPI anchor biosynthetic process;0.0154898122916871!GO:0030176;integral to endoplasmic reticulum membrane;0.0155842783467881!GO:0006672;ceramide metabolic process;0.0155842783467881!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0157361036332657!GO:0015002;heme-copper terminal oxidase activity;0.0157361036332657!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0157361036332657!GO:0004129;cytochrome-c oxidase activity;0.0157361036332657!GO:0006818;hydrogen transport;0.0157910306275872!GO:0051098;regulation of binding;0.0162081664831602!GO:0000792;heterochromatin;0.0162081664831602!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0162081664831602!GO:0030496;midbody;0.0162207827140911!GO:0000178;exosome (RNase complex);0.0164340790009017!GO:0030132;clathrin coat of coated pit;0.0165318174579261!GO:0015992;proton transport;0.0166856142876897!GO:0050178;phenylpyruvate tautomerase activity;0.0167797491047971!GO:0009112;nucleobase metabolic process;0.016843336555723!GO:0009124;nucleoside monophosphate biosynthetic process;0.016843336555723!GO:0009123;nucleoside monophosphate metabolic process;0.016843336555723!GO:0046128;purine ribonucleoside metabolic process;0.0171205207813941!GO:0042278;purine nucleoside metabolic process;0.0171205207813941!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0171708852177506!GO:0043596;nuclear replication fork;0.0171786883515272!GO:0042168;heme metabolic process;0.0171970727984819!GO:0004674;protein serine/threonine kinase activity;0.0172873292615383!GO:0006891;intra-Golgi vesicle-mediated transport;0.0174963420621768!GO:0003746;translation elongation factor activity;0.0178219937063907!GO:0006740;NADPH regeneration;0.0182108547954308!GO:0006098;pentose-phosphate shunt;0.0182108547954308!GO:0008156;negative regulation of DNA replication;0.0185571496706435!GO:0051716;cellular response to stimulus;0.0186969680104903!GO:0016790;thiolester hydrolase activity;0.0187059832189626!GO:0006360;transcription from RNA polymerase I promoter;0.0190158484584742!GO:0006376;mRNA splice site selection;0.0190158484584742!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0190158484584742!GO:0000123;histone acetyltransferase complex;0.0191708658437597!GO:0008361;regulation of cell size;0.0192628910561222!GO:0031371;ubiquitin conjugating enzyme complex;0.0195236110527125!GO:0006220;pyrimidine nucleotide metabolic process;0.0198694749165741!GO:0000096;sulfur amino acid metabolic process;0.0200425947408009!GO:0043189;H4/H2A histone acetyltransferase complex;0.0200987494887328!GO:0003756;protein disulfide isomerase activity;0.0202619651965966!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0202619651965966!GO:0031902;late endosome membrane;0.0205471102263884!GO:0009083;branched chain family amino acid catabolic process;0.0205584637592586!GO:0047485;protein N-terminus binding;0.0206750125578097!GO:0006779;porphyrin biosynthetic process;0.0207336532879712!GO:0033014;tetrapyrrole biosynthetic process;0.0207336532879712!GO:0022411;cellular component disassembly;0.0207983469784716!GO:0016044;membrane organization and biogenesis;0.0208451349356166!GO:0042769;DNA damage response, detection of DNA damage;0.0213181426580959!GO:0005791;rough endoplasmic reticulum;0.0214789461318419!GO:0043631;RNA polyadenylation;0.0216673065676299!GO:0008408;3'-5' exonuclease activity;0.0217867539216422!GO:0008632;apoptotic program;0.0222060058800471!GO:0019783;small conjugating protein-specific protease activity;0.0223635493459138!GO:0035267;NuA4 histone acetyltransferase complex;0.0228570062432163!GO:0000287;magnesium ion binding;0.0229143390771712!GO:0016585;chromatin remodeling complex;0.0232668043750731!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0232668043750731!GO:0008415;acyltransferase activity;0.0234127690135836!GO:0031970;organelle envelope lumen;0.0238749829848018!GO:0030518;steroid hormone receptor signaling pathway;0.0241393449825373!GO:0004532;exoribonuclease activity;0.0247490715417558!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0247490715417558!GO:0051656;establishment of organelle localization;0.0247891420785057!GO:0003887;DNA-directed DNA polymerase activity;0.0248825684435194!GO:0000228;nuclear chromosome;0.0258762444475332!GO:0003702;RNA polymerase II transcription factor activity;0.0261507662306563!GO:0005732;small nucleolar ribonucleoprotein complex;0.0263460862620063!GO:0008538;proteasome activator activity;0.0265897176197161!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0266318554306728!GO:0004843;ubiquitin-specific protease activity;0.0269822248354085!GO:0006520;amino acid metabolic process;0.0274566779156394!GO:0008536;Ran GTPase binding;0.0275234213773!GO:0008601;protein phosphatase type 2A regulator activity;0.027648884800011!GO:0007004;telomere maintenance via telomerase;0.0277048495164938!GO:0031628;opioid receptor binding;0.0280846241630555!GO:0031852;mu-type opioid receptor binding;0.0280846241630555!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0281624326828031!GO:0006007;glucose catabolic process;0.0281831448704742!GO:0005881;cytoplasmic microtubule;0.0286238886499432!GO:0051539;4 iron, 4 sulfur cluster binding;0.0288482290807715!GO:0030911;TPR domain binding;0.0293319764155307!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0293319764155307!GO:0031577;spindle checkpoint;0.0300548136519188!GO:0051287;NAD binding;0.0305756881424604!GO:0030125;clathrin vesicle coat;0.0305756881424604!GO:0030665;clathrin coated vesicle membrane;0.0305756881424604!GO:0005869;dynactin complex;0.0310253737145338!GO:0016569;covalent chromatin modification;0.0314512767166311!GO:0030508;thiol-disulfide exchange intermediate activity;0.032172132068895!GO:0042054;histone methyltransferase activity;0.0321790511950503!GO:0045892;negative regulation of transcription, DNA-dependent;0.0324211743790359!GO:0042802;identical protein binding;0.0328015818886755!GO:0006301;postreplication repair;0.0330422924272468!GO:0048487;beta-tubulin binding;0.0334115455023386!GO:0005784;translocon complex;0.0335193770243527!GO:0009161;ribonucleoside monophosphate metabolic process;0.0337694109487753!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0337694109487753!GO:0000726;non-recombinational repair;0.0337995802484102!GO:0031625;ubiquitin protein ligase binding;0.0339282191073477!GO:0006337;nucleosome disassembly;0.0339282191073477!GO:0031498;chromatin disassembly;0.0339282191073477!GO:0016049;cell growth;0.0343202348326372!GO:0030119;AP-type membrane coat adaptor complex;0.0349014493821352!GO:0000159;protein phosphatase type 2A complex;0.0355956188618141!GO:0007033;vacuole organization and biogenesis;0.0357954975356623!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0368866264798709!GO:0048037;cofactor binding;0.0369792902620948!GO:0019206;nucleoside kinase activity;0.037352111887968!GO:0005663;DNA replication factor C complex;0.0381251727111306!GO:0007040;lysosome organization and biogenesis;0.0389781418138247!GO:0016408;C-acyltransferase activity;0.0392996079507488!GO:0016581;NuRD complex;0.0401360192529619!GO:0008143;poly(A) binding;0.040303537625982!GO:0004221;ubiquitin thiolesterase activity;0.0404897512965226!GO:0030140;trans-Golgi network transport vesicle;0.0404897512965226!GO:0044450;microtubule organizing center part;0.0408568316102167!GO:0006783;heme biosynthetic process;0.0408568316102167!GO:0003725;double-stranded RNA binding;0.0410673436611168!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0413104353549169!GO:0006650;glycerophospholipid metabolic process;0.0413769444338387!GO:0005519;cytoskeletal regulatory protein binding;0.0413891478321062!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0414409722652965!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0414409722652965!GO:0016746;transferase activity, transferring acyl groups;0.0414667615723521!GO:0051640;organelle localization;0.0414965720742726!GO:0008287;protein serine/threonine phosphatase complex;0.0417502608367852!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0420182213927551!GO:0032153;cell division site;0.0420438199253763!GO:0032155;cell division site part;0.0420438199253763!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0420438199253763!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0420438199253763!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0421637391588523!GO:0045603;positive regulation of endothelial cell differentiation;0.0427411214310931!GO:0001832;blastocyst growth;0.0429990379678932!GO:0065009;regulation of a molecular function;0.0431435304384147!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.044017173262634!GO:0032940;secretion by cell;0.044017173262634!GO:0004239;methionyl aminopeptidase activity;0.0452139259174184!GO:0030384;phosphoinositide metabolic process;0.0452293413095855!GO:0046426;negative regulation of JAK-STAT cascade;0.0455439588717971!GO:0044438;microbody part;0.0455963810596072!GO:0044439;peroxisomal part;0.0455963810596072!GO:0009113;purine base biosynthetic process;0.0462534676782752!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0463024465660374!GO:0010257;NADH dehydrogenase complex assembly;0.0463024465660374!GO:0033108;mitochondrial respiratory chain complex assembly;0.0463024465660374!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0464976034660046!GO:0030131;clathrin adaptor complex;0.0465984387970382!GO:0006278;RNA-dependent DNA replication;0.0465984387970382!GO:0004523;ribonuclease H activity;0.0465984387970382!GO:0009066;aspartate family amino acid metabolic process;0.0472468256407536!GO:0016615;malate dehydrogenase activity;0.0481763340112374!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0485823205755698!GO:0006596;polyamine biosynthetic process;0.0486306231936203!GO:0006417;regulation of translation;0.0490214034422194!GO:0022406;membrane docking;0.0490214034422194!GO:0048278;vesicle docking;0.0490214034422194!GO:0010468;regulation of gene expression;0.0496679568490778 | |||
|sample_id=10721 | |sample_id=10721 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 102: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=NKX2-3_NKX2-5:1.77497647426;SOX17:1.46496886664;HOX{A6,A7,B6,B7}:1.31694493038;NR5A1,2:1.26369526437;NRF1:1.24196021189;NANOG:1.18686136992;E2F1..5:1.12006850385;PAX8:1.09661800408;ZNF143:1.03378268985;PBX1:1.02378904987;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01990831076;STAT5{A,B}:0.994710969017;PITX1..3:0.958942310646;TEF:0.957799269337;AIRE:0.928141460761;POU1F1:0.893897911089;TP53:0.863052999693;PAX3,7:0.821982074613;EVI1:0.762539254891;ELK1,4_GABP{A,B1}:0.727574874776;RFX2..5_RFXANK_RFXAP:0.703242930043;HOX{A5,B5}:0.697063073218;RBPJ:0.674864719996;CREB1:0.638785412132;HOX{A4,D4}:0.633596906077;SOX{8,9,10}:0.615863841618;RFX1:0.609974204401;HES1:0.560384579966;LHX3,4:0.515368831888;TAL1_TCF{3,4,12}:0.513188016694;SRF:0.511876242351;FOXA2:0.473617244236;MYB:0.463178160552;RORA:0.46272879801;FOXP1:0.453962000882;BREu{core}:0.452900145303;NFY{A,B,C}:0.441717404737;CRX:0.430374245388;NR6A1:0.413765358224;VSX1,2:0.405627780528;CDC5L:0.379591383576;TEAD1:0.378163340729;YY1:0.340354314388;HIC1:0.311310156421;TFDP1:0.281800279903;SOX2:0.266236089085;ZNF384:0.253413089927;NKX3-1:0.241204932871;GFI1:0.231358811853;MEF2{A,B,C,D}:0.208629948926;EGR1..3:0.191249054256;HBP1_HMGB_SSRP1_UBTF:0.185126489325;ALX4:0.183416300134;PAX5:0.178799991183;GTF2A1,2:0.176329791788;LMO2:0.174521674421;POU2F1..3:0.172352420129;GATA6:0.137266945076;NKX6-1,2:0.136890689796;PATZ1:0.131476207808;TOPORS:0.125533757593;KLF4:0.124680057986;PRRX1,2:0.118860420875;NKX3-2:0.115778973113;MYBL2:0.115585174171;XCPE1{core}:0.109479929339;ADNP_IRX_SIX_ZHX:0.0983110797414;bHLH_family:0.0981010363556;JUN:0.0743730619167;SP1:0.0723054157147;ARID5B:0.0659622523918;TFAP2B:0.055008369008;AHR_ARNT_ARNT2:0.0372402319939;ZNF148:0.0228203948379;SNAI1..3:0.000828932074337;FOXD3:-0.00121997067474;HOXA9_MEIS1:-0.00226476521973;GATA4:-0.00320836729289;OCT4_SOX2{dimer}:-0.0168094460721;TBX4,5:-0.0455317213572;DBP:-0.052565057839;HAND1,2:-0.0766804855003;ZIC1..3:-0.0904000495387;ZBTB16:-0.110462915254;POU6F1:-0.114965069926;NKX2-2,8:-0.129178985939;CDX1,2,4:-0.129495148225;AR:-0.14544826796;FOXP3:-0.150522883505;ZFP161:-0.150814602102;EN1,2:-0.160747284802;HMGA1,2:-0.167415993104;FOSL2:-0.174850957795;ONECUT1,2:-0.175923371637;NR3C1:-0.180960295814;POU3F1..4:-0.197483655721;NFIL3:-0.197579527228;UFEwm:-0.199491011902;NR1H4:-0.203231319398;LEF1_TCF7_TCF7L1,2:-0.222779778744;HNF1A:-0.228385168384;FOS_FOS{B,L1}_JUN{B,D}:-0.232359462654;HLF:-0.233999220383;PPARG:-0.244673715886;NFE2:-0.248889590366;GTF2I:-0.262428611905;TFAP4:-0.266243169801;RXRA_VDR{dimer}:-0.289572580392;NFKB1_REL_RELA:-0.291516837219;BACH2:-0.293413122871;IKZF1:-0.304747246416;RREB1:-0.308836828094;ZBTB6:-0.308879524447;REST:-0.315862436002;ZEB1:-0.32028143008;MED-1{core}:-0.323185597886;HNF4A_NR2F1,2:-0.328243017616;ZNF238:-0.332369744997;ESR1:-0.349877742268;RXR{A,B,G}:-0.389965493795;FOX{I1,J2}:-0.395788605415;ATF5_CREB3:-0.399959661951;NFATC1..3:-0.401461745106;FOXQ1:-0.403596813388;MAFB:-0.413096610446;PAX4:-0.422165296556;PAX1,9:-0.427691968773;GFI1B:-0.462896886981;NFE2L1:-0.465206209253;XBP1:-0.488765724729;CUX2:-0.489807228197;SPIB:-0.493310246735;MTF1:-0.501174668943;RUNX1..3:-0.509209204164;TFAP2{A,C}:-0.544393462593;PRDM1:-0.555390758482;ATF6:-0.582878750754;TGIF1:-0.583280390219;CEBPA,B_DDIT3:-0.584049274088;TLX1..3_NFIC{dimer}:-0.590984015809;STAT2,4,6:-0.604611701998;ATF4:-0.608656177518;POU5F1:-0.609275876749;TFCP2:-0.626134592527;NFE2L2:-0.62870131161;GZF1:-0.636489570077;IKZF2:-0.639956396401;ALX1:-0.64167295005;ZNF423:-0.648409194;MZF1:-0.649867641468;FOXM1:-0.655027604043;DMAP1_NCOR{1,2}_SMARC:-0.656867790562;FOXL1:-0.667791006812;NHLH1,2:-0.672290366591;BPTF:-0.696058964384;SOX5:-0.716308170754;HSF1,2:-0.745562336072;ELF1,2,4:-0.748289396161;FOX{D1,D2}:-0.772646143555;TBP:-0.77267948294;FOX{F1,F2,J1}:-0.782569670871;STAT1,3:-0.792010536602;ETS1,2:-0.811021279027;T:-0.81831597884;PAX2:-0.82857200856;NANOG{mouse}:-0.832652826459;PDX1:-0.843568769548;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.848914610637;SPI1:-0.862580382391;FOXN1:-0.863103732087;SPZ1:-0.865883817732;ESRRA:-0.876042508353;MYFfamily:-0.918188318321;SREBF1,2:-0.928671464093;MYOD1:-0.967181803706;ATF2:-0.977677928139;HMX1:-0.984263577825;MAZ:-0.994818932059;EBF1:-1.02609633358;GLI1..3:-1.06521641697;GCM1,2:-1.0699375096;NKX2-1,4:-1.08772670923;IRF7:-1.10148581968;IRF1,2:-1.13206996724;NFIX:-1.28206840258;PAX6:-1.33882416035;MTE{core}:-1.3747394095;SMAD1..7,9:-1.47618032086;FOXO1,3,4:-1.63428772474;TLX2:-1.84478455172;HIF1A:-1.87339701306;EP300:-2.12746910896 | |top_motifs=NKX2-3_NKX2-5:1.77497647426;SOX17:1.46496886664;HOX{A6,A7,B6,B7}:1.31694493038;NR5A1,2:1.26369526437;NRF1:1.24196021189;NANOG:1.18686136992;E2F1..5:1.12006850385;PAX8:1.09661800408;ZNF143:1.03378268985;PBX1:1.02378904987;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01990831076;STAT5{A,B}:0.994710969017;PITX1..3:0.958942310646;TEF:0.957799269337;AIRE:0.928141460761;POU1F1:0.893897911089;TP53:0.863052999693;PAX3,7:0.821982074613;EVI1:0.762539254891;ELK1,4_GABP{A,B1}:0.727574874776;RFX2..5_RFXANK_RFXAP:0.703242930043;HOX{A5,B5}:0.697063073218;RBPJ:0.674864719996;CREB1:0.638785412132;HOX{A4,D4}:0.633596906077;SOX{8,9,10}:0.615863841618;RFX1:0.609974204401;HES1:0.560384579966;LHX3,4:0.515368831888;TAL1_TCF{3,4,12}:0.513188016694;SRF:0.511876242351;FOXA2:0.473617244236;MYB:0.463178160552;RORA:0.46272879801;FOXP1:0.453962000882;BREu{core}:0.452900145303;NFY{A,B,C}:0.441717404737;CRX:0.430374245388;NR6A1:0.413765358224;VSX1,2:0.405627780528;CDC5L:0.379591383576;TEAD1:0.378163340729;YY1:0.340354314388;HIC1:0.311310156421;TFDP1:0.281800279903;SOX2:0.266236089085;ZNF384:0.253413089927;NKX3-1:0.241204932871;GFI1:0.231358811853;MEF2{A,B,C,D}:0.208629948926;EGR1..3:0.191249054256;HBP1_HMGB_SSRP1_UBTF:0.185126489325;ALX4:0.183416300134;PAX5:0.178799991183;GTF2A1,2:0.176329791788;LMO2:0.174521674421;POU2F1..3:0.172352420129;GATA6:0.137266945076;NKX6-1,2:0.136890689796;PATZ1:0.131476207808;TOPORS:0.125533757593;KLF4:0.124680057986;PRRX1,2:0.118860420875;NKX3-2:0.115778973113;MYBL2:0.115585174171;XCPE1{core}:0.109479929339;ADNP_IRX_SIX_ZHX:0.0983110797414;bHLH_family:0.0981010363556;JUN:0.0743730619167;SP1:0.0723054157147;ARID5B:0.0659622523918;TFAP2B:0.055008369008;AHR_ARNT_ARNT2:0.0372402319939;ZNF148:0.0228203948379;SNAI1..3:0.000828932074337;FOXD3:-0.00121997067474;HOXA9_MEIS1:-0.00226476521973;GATA4:-0.00320836729289;OCT4_SOX2{dimer}:-0.0168094460721;TBX4,5:-0.0455317213572;DBP:-0.052565057839;HAND1,2:-0.0766804855003;ZIC1..3:-0.0904000495387;ZBTB16:-0.110462915254;POU6F1:-0.114965069926;NKX2-2,8:-0.129178985939;CDX1,2,4:-0.129495148225;AR:-0.14544826796;FOXP3:-0.150522883505;ZFP161:-0.150814602102;EN1,2:-0.160747284802;HMGA1,2:-0.167415993104;FOSL2:-0.174850957795;ONECUT1,2:-0.175923371637;NR3C1:-0.180960295814;POU3F1..4:-0.197483655721;NFIL3:-0.197579527228;UFEwm:-0.199491011902;NR1H4:-0.203231319398;LEF1_TCF7_TCF7L1,2:-0.222779778744;HNF1A:-0.228385168384;FOS_FOS{B,L1}_JUN{B,D}:-0.232359462654;HLF:-0.233999220383;PPARG:-0.244673715886;NFE2:-0.248889590366;GTF2I:-0.262428611905;TFAP4:-0.266243169801;RXRA_VDR{dimer}:-0.289572580392;NFKB1_REL_RELA:-0.291516837219;BACH2:-0.293413122871;IKZF1:-0.304747246416;RREB1:-0.308836828094;ZBTB6:-0.308879524447;REST:-0.315862436002;ZEB1:-0.32028143008;MED-1{core}:-0.323185597886;HNF4A_NR2F1,2:-0.328243017616;ZNF238:-0.332369744997;ESR1:-0.349877742268;RXR{A,B,G}:-0.389965493795;FOX{I1,J2}:-0.395788605415;ATF5_CREB3:-0.399959661951;NFATC1..3:-0.401461745106;FOXQ1:-0.403596813388;MAFB:-0.413096610446;PAX4:-0.422165296556;PAX1,9:-0.427691968773;GFI1B:-0.462896886981;NFE2L1:-0.465206209253;XBP1:-0.488765724729;CUX2:-0.489807228197;SPIB:-0.493310246735;MTF1:-0.501174668943;RUNX1..3:-0.509209204164;TFAP2{A,C}:-0.544393462593;PRDM1:-0.555390758482;ATF6:-0.582878750754;TGIF1:-0.583280390219;CEBPA,B_DDIT3:-0.584049274088;TLX1..3_NFIC{dimer}:-0.590984015809;STAT2,4,6:-0.604611701998;ATF4:-0.608656177518;POU5F1:-0.609275876749;TFCP2:-0.626134592527;NFE2L2:-0.62870131161;GZF1:-0.636489570077;IKZF2:-0.639956396401;ALX1:-0.64167295005;ZNF423:-0.648409194;MZF1:-0.649867641468;FOXM1:-0.655027604043;DMAP1_NCOR{1,2}_SMARC:-0.656867790562;FOXL1:-0.667791006812;NHLH1,2:-0.672290366591;BPTF:-0.696058964384;SOX5:-0.716308170754;HSF1,2:-0.745562336072;ELF1,2,4:-0.748289396161;FOX{D1,D2}:-0.772646143555;TBP:-0.77267948294;FOX{F1,F2,J1}:-0.782569670871;STAT1,3:-0.792010536602;ETS1,2:-0.811021279027;T:-0.81831597884;PAX2:-0.82857200856;NANOG{mouse}:-0.832652826459;PDX1:-0.843568769548;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.848914610637;SPI1:-0.862580382391;FOXN1:-0.863103732087;SPZ1:-0.865883817732;ESRRA:-0.876042508353;MYFfamily:-0.918188318321;SREBF1,2:-0.928671464093;MYOD1:-0.967181803706;ATF2:-0.977677928139;HMX1:-0.984263577825;MAZ:-0.994818932059;EBF1:-1.02609633358;GLI1..3:-1.06521641697;GCM1,2:-1.0699375096;NKX2-1,4:-1.08772670923;IRF7:-1.10148581968;IRF1,2:-1.13206996724;NFIX:-1.28206840258;PAX6:-1.33882416035;MTE{core}:-1.3747394095;SMAD1..7,9:-1.47618032086;FOXO1,3,4:-1.63428772474;TLX2:-1.84478455172;HIF1A:-1.87339701306;EP300:-2.12746910896 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10721-110A1;search_select_hide=table117:FF:10721-110A1 | |||
}} | }} | ||
Latest revision as of 15:01, 3 June 2020
| Name: | leiomyoblastoma cell line:G-402 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11848 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11848
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11848
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.338 |
| 10 | 10 | 0.33 |
| 100 | 100 | 0.0639 |
| 101 | 101 | 0.647 |
| 102 | 102 | 0.998 |
| 103 | 103 | 0.222 |
| 104 | 104 | 0.504 |
| 105 | 105 | 0.834 |
| 106 | 106 | 3.09753e-6 |
| 107 | 107 | 0.0152 |
| 108 | 108 | 0.989 |
| 109 | 109 | 0.0133 |
| 11 | 11 | 0.366 |
| 110 | 110 | 0.208 |
| 111 | 111 | 0.536 |
| 112 | 112 | 0.34 |
| 113 | 113 | 0.0145 |
| 114 | 114 | 0.493 |
| 115 | 115 | 0.932 |
| 116 | 116 | 0.584 |
| 117 | 117 | 0.11 |
| 118 | 118 | 0.837 |
| 119 | 119 | 0.134 |
| 12 | 12 | 0.434 |
| 120 | 120 | 0.717 |
| 121 | 121 | 0.0811 |
| 122 | 122 | 0.815 |
| 123 | 123 | 0.218 |
| 124 | 124 | 0.838 |
| 125 | 125 | 0.931 |
| 126 | 126 | 0.837 |
| 127 | 127 | 0.583 |
| 128 | 128 | 0.00116 |
| 129 | 129 | 0.702 |
| 13 | 13 | 0.0359 |
| 130 | 130 | 0.959 |
| 131 | 131 | 0.351 |
| 132 | 132 | 0.542 |
| 133 | 133 | 0.00657 |
| 134 | 134 | 0.356 |
| 135 | 135 | 0.125 |
| 136 | 136 | 0.0497 |
| 137 | 137 | 0.622 |
| 138 | 138 | 0.513 |
| 139 | 139 | 0.151 |
| 14 | 14 | 0.395 |
| 140 | 140 | 0.24 |
| 141 | 141 | 0.538 |
| 142 | 142 | 0.807 |
| 143 | 143 | 0.0619 |
| 144 | 144 | 0.697 |
| 145 | 145 | 0.492 |
| 146 | 146 | 0.295 |
| 147 | 147 | 0.408 |
| 148 | 148 | 0.545 |
| 149 | 149 | 0.0339 |
| 15 | 15 | 0.498 |
| 150 | 150 | 0.0915 |
| 151 | 151 | 0.265 |
| 152 | 152 | 0.975 |
| 153 | 153 | 0.118 |
| 154 | 154 | 0.967 |
| 155 | 155 | 0.316 |
| 156 | 156 | 0.786 |
| 157 | 157 | 0.643 |
| 158 | 158 | 0.331 |
| 159 | 159 | 0.251 |
| 16 | 16 | 0.648 |
| 160 | 160 | 0.928 |
| 161 | 161 | 0.644 |
| 162 | 162 | 0.153 |
| 163 | 163 | 0.0499 |
| 164 | 164 | 0.972 |
| 165 | 165 | 0.315 |
| 166 | 166 | 0.163 |
| 167 | 167 | 0.761 |
| 168 | 168 | 0.0146 |
| 169 | 169 | 0.721 |
| 17 | 17 | 0.399 |
| 18 | 18 | 0.206 |
| 19 | 19 | 0.421 |
| 2 | 2 | 0.0938 |
| 20 | 20 | 0.123 |
| 21 | 21 | 0.885 |
| 22 | 22 | 0.936 |
| 23 | 23 | 0.00211 |
| 24 | 24 | 0.956 |
| 25 | 25 | 0.633 |
| 26 | 26 | 0.564 |
| 27 | 27 | 0.243 |
| 28 | 28 | 0.966 |
| 29 | 29 | 0.475 |
| 3 | 3 | 0.504 |
| 30 | 30 | 0.302 |
| 31 | 31 | 0.27 |
| 32 | 32 | 0.877 |
| 33 | 33 | 0.974 |
| 34 | 34 | 0.477 |
| 35 | 35 | 0.597 |
| 36 | 36 | 0.0774 |
| 37 | 37 | 0.815 |
| 38 | 38 | 0.484 |
| 39 | 39 | 0.389 |
| 4 | 4 | 0.912 |
| 40 | 40 | 0.00932 |
| 41 | 41 | 0.0906 |
| 42 | 42 | 0.0875 |
| 43 | 43 | 0.247 |
| 44 | 44 | 0.481 |
| 45 | 45 | 0.0512 |
| 46 | 46 | 0.681 |
| 47 | 47 | 0.0347 |
| 48 | 48 | 0.182 |
| 49 | 49 | 0.983 |
| 5 | 5 | 0.184 |
| 50 | 50 | 0.9 |
| 51 | 51 | 0.945 |
| 52 | 52 | 0.123 |
| 53 | 53 | 0.575 |
| 54 | 54 | 0.595 |
| 55 | 55 | 0.737 |
| 56 | 56 | 0.687 |
| 57 | 57 | 0.383 |
| 58 | 58 | 0.0919 |
| 59 | 59 | 0.0937 |
| 6 | 6 | 0.895 |
| 60 | 60 | 0.0592 |
| 61 | 61 | 0.361 |
| 62 | 62 | 0.202 |
| 63 | 63 | 0.961 |
| 64 | 64 | 0.536 |
| 65 | 65 | 0.0291 |
| 66 | 66 | 0.0563 |
| 67 | 67 | 0.927 |
| 68 | 68 | 0.116 |
| 69 | 69 | 0.468 |
| 7 | 7 | 0.372 |
| 70 | 70 | 0.767 |
| 71 | 71 | 0.918 |
| 72 | 72 | 0.138 |
| 73 | 73 | 0.442 |
| 74 | 74 | 0.161 |
| 75 | 75 | 0.0847 |
| 76 | 76 | 0.809 |
| 77 | 77 | 0.477 |
| 78 | 78 | 0.933 |
| 79 | 79 | 0.18 |
| 8 | 8 | 0.112 |
| 80 | 80 | 0.0228 |
| 81 | 81 | 0.617 |
| 82 | 82 | 0.711 |
| 83 | 83 | 0.706 |
| 84 | 84 | 0.982 |
| 85 | 85 | 0.0406 |
| 86 | 86 | 0.581 |
| 87 | 87 | 0.105 |
| 88 | 88 | 0.0904 |
| 89 | 89 | 0.651 |
| 9 | 9 | 0.281 |
| 90 | 90 | 0.944 |
| 91 | 91 | 0.0494 |
| 92 | 92 | 0.0604 |
| 93 | 93 | 0.753 |
| 94 | 94 | 0.984 |
| 95 | 95 | 0.00165 |
| 96 | 96 | 0.855 |
| 97 | 97 | 0.823 |
| 98 | 98 | 0.408 |
| 99 | 99 | 0.601 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11848
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100678 G-402 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0103192 (renal cancer cell line sample)
0100678 (G-402 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
