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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005210
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|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013692
|accession_numbers=CAGE;DRX008196;DRR009068;DRZ000493;DRZ001878;DRZ011843;DRZ013228
|accession_numbers_RNASeq=sRNA-Seq;DRX012364;DRR013812;DRZ003013
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|comment=
|comment=
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|creation_date=
|data_phase=2
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|def=
|def=
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Line 35: Line 44:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor2.CNhs11956.11307-117C2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor2.CNhs11956.11307-117C2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor2.CNhs11956.11307-117C2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD8%252b%2520T%2520Cells%252c%2520donor2.CNhs11956.11307-117C2.hg38.nobarcode.ctss.bed.gz
|id=FF:11307-117C2
|id=FF:11307-117C2
|is_a=EFO:0002091;;FF:0000002;;FF:0000030;;FF:0000210
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|is_obsolete=
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|library_id_phase_based=2:CNhs11956
|microRNAs=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.CTTGTA.11307
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11307
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|name=CD8+ T Cells, donor2
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|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
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|rna_box=117
|rna_box=117
|rna_catalog_number=3H100-26-10
|rna_catalog_number=3H100-26-10
Line 56: Line 82:
|rna_tube_id=117C2
|rna_tube_id=117C2
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10010.CTTGTA
|sample_age=57
|sample_age=57
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.64020855292434e-224!GO:0043227;membrane-bound organelle;4.70238079668749e-199!GO:0043231;intracellular membrane-bound organelle;1.27210461194443e-198!GO:0043226;organelle;8.79640496504352e-187!GO:0043229;intracellular organelle;5.5016790867684e-186!GO:0005737;cytoplasm;2.52373600748233e-123!GO:0005634;nucleus;2.46690062296215e-119!GO:0044422;organelle part;1.39467675010548e-110!GO:0044446;intracellular organelle part;8.18592936331873e-109!GO:0043170;macromolecule metabolic process;7.70206470824136e-106!GO:0044237;cellular metabolic process;5.45019859623532e-97!GO:0044238;primary metabolic process;3.02980174954691e-96!GO:0032991;macromolecular complex;1.74758080687844e-83!GO:0044428;nuclear part;7.52067798699264e-83!GO:0043283;biopolymer metabolic process;8.23911847420227e-82!GO:0003723;RNA binding;1.75399581431086e-77!GO:0044444;cytoplasmic part;2.92346336195511e-77!GO:0030529;ribonucleoprotein complex;2.6903182388565e-71!GO:0010467;gene expression;4.58738938090349e-66!GO:0005515;protein binding;1.33222280714735e-65!GO:0043233;organelle lumen;3.79941104677751e-65!GO:0031974;membrane-enclosed lumen;3.79941104677751e-65!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.39988155151377e-61!GO:0031981;nuclear lumen;1.13998545084331e-53!GO:0019538;protein metabolic process;9.94356061165732e-50!GO:0006396;RNA processing;1.2994908374287e-49!GO:0003676;nucleic acid binding;3.16008308803478e-48!GO:0044267;cellular protein metabolic process;1.30349442260998e-47!GO:0044260;cellular macromolecule metabolic process;1.07594576614019e-46!GO:0033036;macromolecule localization;3.55902395045389e-45!GO:0016071;mRNA metabolic process;1.1380249047396e-44!GO:0015031;protein transport;6.73715918554175e-43!GO:0043234;protein complex;9.1648053055214e-42!GO:0006412;translation;2.41996795915119e-41!GO:0045184;establishment of protein localization;2.52494948889085e-41!GO:0016070;RNA metabolic process;3.90145746517622e-41!GO:0008104;protein localization;5.127737679378e-41!GO:0008380;RNA splicing;2.71320843874858e-38!GO:0006397;mRNA processing;2.06314034820192e-37!GO:0031090;organelle membrane;7.50478787910433e-36!GO:0005840;ribosome;2.54098714145611e-35!GO:0005739;mitochondrion;6.25352008334154e-35!GO:0005654;nucleoplasm;1.16103793006828e-34!GO:0016043;cellular component organization and biogenesis;4.95339636667999e-33!GO:0046907;intracellular transport;6.24382872160101e-33!GO:0006259;DNA metabolic process;4.62607038239606e-32!GO:0009059;macromolecule biosynthetic process;7.32416301499296e-32!GO:0003735;structural constituent of ribosome;1.28565215519341e-31!GO:0031967;organelle envelope;5.81197022599643e-31!GO:0031975;envelope;1.18837469243953e-30!GO:0000166;nucleotide binding;3.27083434169123e-30!GO:0006886;intracellular protein transport;4.80738208739115e-30!GO:0005829;cytosol;2.87846716267485e-29!GO:0005681;spliceosome;6.25465770405342e-29!GO:0033279;ribosomal subunit;7.21618711529248e-29!GO:0006512;ubiquitin cycle;8.5560216527494e-29!GO:0044451;nucleoplasm part;1.18684003627329e-28!GO:0065003;macromolecular complex assembly;6.56972250063549e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.03066206089282e-26!GO:0044429;mitochondrial part;3.38185620958789e-26!GO:0006996;organelle organization and biogenesis;6.63165802652297e-26!GO:0043412;biopolymer modification;1.95165479472641e-25!GO:0022607;cellular component assembly;2.9093007803103e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.15531269556796e-25!GO:0009058;biosynthetic process;2.57398691453863e-23!GO:0051641;cellular localization;7.67467062801559e-23!GO:0051649;establishment of cellular localization;1.02639465035468e-22!GO:0006464;protein modification process;1.07071482194517e-22!GO:0012501;programmed cell death;1.18907075890894e-22!GO:0044445;cytosolic part;1.43295564469078e-22!GO:0044249;cellular biosynthetic process;2.00110089343764e-22!GO:0006915;apoptosis;2.13799284549521e-22!GO:0043687;post-translational protein modification;2.93934700389412e-22!GO:0032553;ribonucleotide binding;5.29006671615329e-22!GO:0032555;purine ribonucleotide binding;5.29006671615329e-22!GO:0008219;cell death;5.34703855528487e-22!GO:0016265;death;5.34703855528487e-22!GO:0008134;transcription factor binding;7.96651049571862e-22!GO:0050794;regulation of cellular process;2.55818046069814e-21!GO:0017111;nucleoside-triphosphatase activity;6.23820867410685e-21!GO:0017076;purine nucleotide binding;1.06529610564621e-20!GO:0019941;modification-dependent protein catabolic process;2.18993243307937e-20!GO:0043632;modification-dependent macromolecule catabolic process;2.18993243307937e-20!GO:0016462;pyrophosphatase activity;2.52518461475443e-20!GO:0006511;ubiquitin-dependent protein catabolic process;2.53911208445315e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.66745256167693e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;2.66745256167693e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.38125497465959e-20!GO:0044257;cellular protein catabolic process;8.91466260414574e-20!GO:0016874;ligase activity;1.89399229237112e-19!GO:0005730;nucleolus;6.15325514417443e-19!GO:0044265;cellular macromolecule catabolic process;6.89674153783255e-19!GO:0006605;protein targeting;2.36044169026355e-18!GO:0016604;nuclear body;2.36044169026355e-18!GO:0005524;ATP binding;3.58220484352706e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;6.03004817905324e-18!GO:0032559;adenyl ribonucleotide binding;8.35257034695977e-18!GO:0006913;nucleocytoplasmic transport;9.5494409172981e-18!GO:0019222;regulation of metabolic process;1.28411968853981e-17!GO:0051276;chromosome organization and biogenesis;1.50423749052413e-17!GO:0005740;mitochondrial envelope;1.80008158508918e-17!GO:0051169;nuclear transport;1.92287018260213e-17!GO:0043228;non-membrane-bound organelle;1.99108845453964e-17!GO:0043232;intracellular non-membrane-bound organelle;1.99108845453964e-17!GO:0031966;mitochondrial membrane;3.42983617338733e-17!GO:0007049;cell cycle;3.72189042112601e-17!GO:0006323;DNA packaging;3.78976216741137e-17!GO:0043285;biopolymer catabolic process;6.9798026063217e-17!GO:0022618;protein-RNA complex assembly;9.84248120141288e-17!GO:0030554;adenyl nucleotide binding;2.29703761574319e-16!GO:0019866;organelle inner membrane;3.58498570867494e-16!GO:0042981;regulation of apoptosis;1.00418985821623e-15!GO:0043067;regulation of programmed cell death;1.20618329782361e-15!GO:0012505;endomembrane system;1.61212474159326e-15!GO:0016607;nuclear speck;2.15388973148611e-15!GO:0008135;translation factor activity, nucleic acid binding;3.45669243108312e-15!GO:0006974;response to DNA damage stimulus;3.6103940548206e-15!GO:0050789;regulation of biological process;3.88072004900982e-15!GO:0006119;oxidative phosphorylation;4.92281862687197e-15!GO:0015934;large ribosomal subunit;4.92281862687197e-15!GO:0031323;regulation of cellular metabolic process;5.41633417632628e-15!GO:0006350;transcription;5.71948866703589e-15!GO:0015935;small ribosomal subunit;7.8071391969367e-15!GO:0042623;ATPase activity, coupled;1.55946183205656e-14!GO:0031965;nuclear membrane;1.6196527766563e-14!GO:0005635;nuclear envelope;1.67891350982966e-14!GO:0016887;ATPase activity;1.67891350982966e-14!GO:0030163;protein catabolic process;2.3135123563258e-14!GO:0009057;macromolecule catabolic process;4.33426274867971e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.63203051852262e-14!GO:0005743;mitochondrial inner membrane;1.12800940949233e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.81776787925943e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.95020359147416e-13!GO:0000375;RNA splicing, via transesterification reactions;1.95020359147416e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.95020359147416e-13!GO:0016568;chromatin modification;2.02737151171182e-13!GO:0003712;transcription cofactor activity;3.30956316340551e-13!GO:0004386;helicase activity;6.33468941797001e-13!GO:0006366;transcription from RNA polymerase II promoter;6.34521310797694e-13!GO:0017038;protein import;7.20612249326397e-13!GO:0010468;regulation of gene expression;8.6780296463571e-13!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.92568570712103e-13!GO:0044453;nuclear membrane part;1.51160893530474e-12!GO:0006281;DNA repair;2.1187154240855e-12!GO:0044455;mitochondrial membrane part;3.79322738815351e-12!GO:0006793;phosphorus metabolic process;3.8476645086491e-12!GO:0006796;phosphate metabolic process;3.8476645086491e-12!GO:0008639;small protein conjugating enzyme activity;4.45740051063331e-12!GO:0022402;cell cycle process;4.93645180178264e-12!GO:0032774;RNA biosynthetic process;5.09234696892471e-12!GO:0006351;transcription, DNA-dependent;5.45630823816319e-12!GO:0006457;protein folding;5.68849947171834e-12!GO:0004842;ubiquitin-protein ligase activity;5.78928327614583e-12!GO:0051726;regulation of cell cycle;8.83522861421793e-12!GO:0008026;ATP-dependent helicase activity;1.17187734863926e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.36816672248173e-11!GO:0000074;regulation of progression through cell cycle;1.89057090461846e-11!GO:0005694;chromosome;2.5886523640463e-11!GO:0006333;chromatin assembly or disassembly;2.5886523640463e-11!GO:0003743;translation initiation factor activity;3.05557980125373e-11!GO:0065004;protein-DNA complex assembly;3.07102530353466e-11!GO:0048770;pigment granule;3.09209664814192e-11!GO:0042470;melanosome;3.09209664814192e-11!GO:0005794;Golgi apparatus;3.14713666984513e-11!GO:0019787;small conjugating protein ligase activity;3.35718308455101e-11!GO:0045449;regulation of transcription;3.42370813476008e-11!GO:0048523;negative regulation of cellular process;3.45175976476826e-11!GO:0031980;mitochondrial lumen;8.87743611472829e-11!GO:0005759;mitochondrial matrix;8.87743611472829e-11!GO:0016310;phosphorylation;1.22783777742292e-10!GO:0048193;Golgi vesicle transport;1.2545799340675e-10!GO:0050657;nucleic acid transport;1.25615766176566e-10!GO:0051236;establishment of RNA localization;1.25615766176566e-10!GO:0050658;RNA transport;1.25615766176566e-10!GO:0006403;RNA localization;1.44892763979794e-10!GO:0005746;mitochondrial respiratory chain;1.44892763979794e-10!GO:0005643;nuclear pore;1.4726299320183e-10!GO:0006413;translational initiation;1.67160347722144e-10!GO:0044248;cellular catabolic process;1.75965558867123e-10!GO:0006606;protein import into nucleus;2.33637443029664e-10!GO:0051170;nuclear import;2.42124757965343e-10!GO:0007243;protein kinase cascade;2.51414399146558e-10!GO:0006446;regulation of translational initiation;4.48499127920971e-10!GO:0009719;response to endogenous stimulus;4.81298621630042e-10!GO:0065007;biological regulation;4.95365049023168e-10!GO:0008270;zinc ion binding;7.36765716009419e-10!GO:0031324;negative regulation of cellular metabolic process;7.72516534448321e-10!GO:0006355;regulation of transcription, DNA-dependent;8.05165823405354e-10!GO:0048519;negative regulation of biological process;1.01977339360357e-09!GO:0044427;chromosomal part;1.17122547025301e-09!GO:0051082;unfolded protein binding;1.23820800257799e-09!GO:0016564;transcription repressor activity;1.25079760978428e-09!GO:0050136;NADH dehydrogenase (quinone) activity;1.26048089292463e-09!GO:0003954;NADH dehydrogenase activity;1.26048089292463e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.26048089292463e-09!GO:0042254;ribosome biogenesis and assembly;2.00758875361383e-09!GO:0005768;endosome;2.76278541195961e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.23329571608595e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.61171141628502e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.39539593676699e-09!GO:0051028;mRNA transport;7.91014121498846e-09!GO:0016881;acid-amino acid ligase activity;8.07255265733255e-09!GO:0000785;chromatin;8.197067599264e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.45159622932821e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.19679783998365e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.24832669898598e-08!GO:0042773;ATP synthesis coupled electron transport;1.24832669898598e-08!GO:0009892;negative regulation of metabolic process;1.35259306289249e-08!GO:0046930;pore complex;1.355980230647e-08!GO:0043566;structure-specific DNA binding;1.54093318952846e-08!GO:0016481;negative regulation of transcription;1.97745952467676e-08!GO:0016563;transcription activator activity;2.02349229244635e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.17898776059596e-08!GO:0003677;DNA binding;2.30109900954879e-08!GO:0007242;intracellular signaling cascade;2.6552601847051e-08!GO:0045786;negative regulation of progression through cell cycle;2.66537171408206e-08!GO:0043065;positive regulation of apoptosis;2.7343550093e-08!GO:0032446;protein modification by small protein conjugation;2.81663247871978e-08!GO:0030964;NADH dehydrogenase complex (quinone);2.98447381181914e-08!GO:0045271;respiratory chain complex I;2.98447381181914e-08!GO:0005747;mitochondrial respiratory chain complex I;2.98447381181914e-08!GO:0065009;regulation of a molecular function;3.51840905982319e-08!GO:0006917;induction of apoptosis;3.68544705200878e-08!GO:0003713;transcription coactivator activity;3.69899273745281e-08!GO:0043068;positive regulation of programmed cell death;3.90146460850137e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.3923856348952e-08!GO:0019829;cation-transporting ATPase activity;4.58928372776711e-08!GO:0065002;intracellular protein transport across a membrane;4.72334565558278e-08!GO:0016567;protein ubiquitination;4.79009341530838e-08!GO:0012502;induction of programmed cell death;6.21446665751257e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.49957164922275e-08!GO:0019899;enzyme binding;6.49957164922275e-08!GO:0003697;single-stranded DNA binding;6.93487520417196e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.21818629773728e-08!GO:0016192;vesicle-mediated transport;8.60478733905508e-08!GO:0016740;transferase activity;1.13200193548295e-07!GO:0044432;endoplasmic reticulum part;1.19134287967722e-07!GO:0008565;protein transporter activity;2.29466676727868e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.38441015835099e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.06971467024808e-07!GO:0051246;regulation of protein metabolic process;3.14929929726168e-07!GO:0004674;protein serine/threonine kinase activity;3.36933008941538e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.46022579710474e-07!GO:0031497;chromatin assembly;3.56875293532459e-07!GO:0043069;negative regulation of programmed cell death;4.89798280370892e-07!GO:0000151;ubiquitin ligase complex;5.3797069086759e-07!GO:0016072;rRNA metabolic process;5.39702462721091e-07!GO:0006334;nucleosome assembly;6.13740186761235e-07!GO:0006364;rRNA processing;6.5799967308994e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.7077611005181e-07!GO:0043066;negative regulation of apoptosis;8.80065035145439e-07!GO:0005783;endoplasmic reticulum;9.30670233690742e-07!GO:0016787;hydrolase activity;9.72231251563787e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.97205614351347e-07!GO:0046914;transition metal ion binding;1.22429926986444e-06!GO:0051168;nuclear export;1.22728727624213e-06!GO:0006916;anti-apoptosis;1.41544819803495e-06!GO:0006260;DNA replication;1.46955013933644e-06!GO:0000278;mitotic cell cycle;1.66328348144488e-06!GO:0005789;endoplasmic reticulum membrane;1.66851670459774e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.7847225340304e-06!GO:0006399;tRNA metabolic process;1.8184934664806e-06!GO:0003724;RNA helicase activity;2.7332974283272e-06!GO:0051186;cofactor metabolic process;3.96411005165807e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.43418589143109e-06!GO:0015399;primary active transmembrane transporter activity;4.43418589143109e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.13094509490347e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.39210815870408e-06!GO:0003714;transcription corepressor activity;5.39708069616795e-06!GO:0009259;ribonucleotide metabolic process;5.58513142779737e-06!GO:0015986;ATP synthesis coupled proton transport;5.62854269268684e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.62854269268684e-06!GO:0005525;GTP binding;5.76572825386904e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.84556762080626e-06!GO:0000245;spliceosome assembly;6.56171435799792e-06!GO:0009260;ribonucleotide biosynthetic process;8.31714231926504e-06!GO:0015078;hydrogen ion transmembrane transporter activity;8.5890892607236e-06!GO:0003924;GTPase activity;9.15956628789252e-06!GO:0005761;mitochondrial ribosome;9.15956628789252e-06!GO:0000313;organellar ribosome;9.15956628789252e-06!GO:0005793;ER-Golgi intermediate compartment;9.52180334329122e-06!GO:0006461;protein complex assembly;1.00330985323064e-05!GO:0006402;mRNA catabolic process;1.04514673908914e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.05755299575508e-05!GO:0060090;molecular adaptor activity;1.1403259399756e-05!GO:0009060;aerobic respiration;1.32506327334923e-05!GO:0044440;endosomal part;1.34267963570726e-05!GO:0010008;endosome membrane;1.34267963570726e-05!GO:0016363;nuclear matrix;1.38263075290971e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.40568849873941e-05!GO:0007264;small GTPase mediated signal transduction;1.43928332333661e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.55090442055723e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.56012077778036e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.56012077778036e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.56012077778036e-05!GO:0005813;centrosome;1.87201949631764e-05!GO:0008632;apoptotic program;2.01005977409841e-05!GO:0006164;purine nucleotide biosynthetic process;2.0922478178204e-05!GO:0009150;purine ribonucleotide metabolic process;2.36387432752559e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.51500436265133e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.51500436265133e-05!GO:0006754;ATP biosynthetic process;2.66640573628896e-05!GO:0006753;nucleoside phosphate metabolic process;2.66640573628896e-05!GO:0048522;positive regulation of cellular process;2.73971924009965e-05!GO:0044431;Golgi apparatus part;2.75990410349732e-05!GO:0016779;nucleotidyltransferase activity;2.78051358858535e-05!GO:0006163;purine nucleotide metabolic process;2.87528398666793e-05!GO:0006401;RNA catabolic process;3.05205473014021e-05!GO:0004298;threonine endopeptidase activity;3.2954031484173e-05!GO:0006732;coenzyme metabolic process;3.34569992651537e-05!GO:0043492;ATPase activity, coupled to movement of substances;3.5288947709621e-05!GO:0008234;cysteine-type peptidase activity;3.65206651426768e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.73102049967047e-05!GO:0005667;transcription factor complex;3.89123055758371e-05!GO:0050790;regulation of catalytic activity;4.22808602791299e-05!GO:0043038;amino acid activation;4.23643968795866e-05!GO:0006418;tRNA aminoacylation for protein translation;4.23643968795866e-05!GO:0043039;tRNA aminoacylation;4.23643968795866e-05!GO:0008186;RNA-dependent ATPase activity;4.51869265248438e-05!GO:0048475;coated membrane;4.53313817197706e-05!GO:0030117;membrane coat;4.53313817197706e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.5986196694176e-05!GO:0009056;catabolic process;4.84741933383963e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.84741933383963e-05!GO:0007265;Ras protein signal transduction;4.88436006019316e-05!GO:0030120;vesicle coat;4.99375911874977e-05!GO:0030662;coated vesicle membrane;4.99375911874977e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.17933345596119e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.17933345596119e-05!GO:0045892;negative regulation of transcription, DNA-dependent;5.30068400724447e-05!GO:0006352;transcription initiation;5.48168062704573e-05!GO:0005770;late endosome;5.64901282810615e-05!GO:0009199;ribonucleoside triphosphate metabolic process;6.41894786901625e-05!GO:0005815;microtubule organizing center;6.94144291084484e-05!GO:0003729;mRNA binding;7.05265691316098e-05!GO:0045259;proton-transporting ATP synthase complex;7.44059499938083e-05!GO:0007005;mitochondrion organization and biogenesis;8.11925853642948e-05!GO:0032561;guanyl ribonucleotide binding;9.7882872683546e-05!GO:0019001;guanyl nucleotide binding;9.7882872683546e-05!GO:0005773;vacuole;9.84469290326815e-05!GO:0009141;nucleoside triphosphate metabolic process;0.000101369072023681!GO:0046034;ATP metabolic process;0.000102871115052142!GO:0006613;cotranslational protein targeting to membrane;0.000103125305142573!GO:0005769;early endosome;0.000116829577793252!GO:0045333;cellular respiration;0.000121636242182272!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.00012415399032187!GO:0009144;purine nucleoside triphosphate metabolic process;0.00012415399032187!GO:0030695;GTPase regulator activity;0.000127915014277731!GO:0004004;ATP-dependent RNA helicase activity;0.000131519527057344!GO:0051427;hormone receptor binding;0.000140438037997879!GO:0019783;small conjugating protein-specific protease activity;0.000153838808028455!GO:0016251;general RNA polymerase II transcription factor activity;0.000181955405488325!GO:0051188;cofactor biosynthetic process;0.000201244785027535!GO:0043623;cellular protein complex assembly;0.000210595778741902!GO:0048471;perinuclear region of cytoplasm;0.000221890169075705!GO:0009615;response to virus;0.000225526768029868!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000232174197554311!GO:0004843;ubiquitin-specific protease activity;0.000240497983492059!GO:0016197;endosome transport;0.000241486714037056!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000256771623982092!GO:0003690;double-stranded DNA binding;0.000262545294810211!GO:0035257;nuclear hormone receptor binding;0.000270787976003865!GO:0005070;SH3/SH2 adaptor activity;0.000289909661436931!GO:0022403;cell cycle phase;0.000289909661436931!GO:0015631;tubulin binding;0.000321297579765989!GO:0009966;regulation of signal transduction;0.000327284994960298!GO:0006607;NLS-bearing substrate import into nucleus;0.000327736476312341!GO:0016301;kinase activity;0.000339407463373892!GO:0042110;T cell activation;0.000383902203107908!GO:0046649;lymphocyte activation;0.000384888338212522!GO:0006261;DNA-dependent DNA replication;0.000394904218138945!GO:0000139;Golgi membrane;0.000493610062182699!GO:0015630;microtubule cytoskeleton;0.000518224257748396!GO:0030384;phosphoinositide metabolic process;0.000539140781917966!GO:0006099;tricarboxylic acid cycle;0.000550387993472746!GO:0046356;acetyl-CoA catabolic process;0.000550387993472746!GO:0009055;electron carrier activity;0.000604756898033898!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000614859452583962!GO:0004221;ubiquitin thiolesterase activity;0.000616109350686386!GO:0048518;positive regulation of biological process;0.000624195643526239!GO:0006611;protein export from nucleus;0.000657657234627174!GO:0006310;DNA recombination;0.000660019940753871!GO:0000323;lytic vacuole;0.000670303300620544!GO:0005764;lysosome;0.000670303300620544!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000696262704639245!GO:0006417;regulation of translation;0.00070380144439076!GO:0006612;protein targeting to membrane;0.000711757909520498!GO:0005083;small GTPase regulator activity;0.000716679799890378!GO:0031252;leading edge;0.000716679799890378!GO:0009108;coenzyme biosynthetic process;0.000764501266171926!GO:0019843;rRNA binding;0.000773605893633024!GO:0048468;cell development;0.000773856469955246!GO:0051789;response to protein stimulus;0.000820539267537806!GO:0006986;response to unfolded protein;0.000820539267537806!GO:0008654;phospholipid biosynthetic process;0.00085128259182983!GO:0006084;acetyl-CoA metabolic process;0.00085521605023733!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000863776315408713!GO:0008287;protein serine/threonine phosphatase complex;0.000881167782747525!GO:0022415;viral reproductive process;0.000902767736159093!GO:0005885;Arp2/3 protein complex;0.000936561596731761!GO:0006891;intra-Golgi vesicle-mediated transport;0.000950115334965612!GO:0006752;group transfer coenzyme metabolic process;0.000954189649808611!GO:0008047;enzyme activator activity;0.000984613505514368!GO:0005637;nuclear inner membrane;0.00100812364377796!GO:0007050;cell cycle arrest;0.00105306014770115!GO:0045941;positive regulation of transcription;0.00109965762548292!GO:0006414;translational elongation;0.00118406165664654!GO:0051329;interphase of mitotic cell cycle;0.001277611986154!GO:0005774;vacuolar membrane;0.00128314585028233!GO:0046966;thyroid hormone receptor binding;0.00140160183200551!GO:0009967;positive regulation of signal transduction;0.00147652137928478!GO:0051301;cell division;0.00148804645042988!GO:0006468;protein amino acid phosphorylation;0.00170074703714896!GO:0001772;immunological synapse;0.00173675628257577!GO:0031326;regulation of cellular biosynthetic process;0.00179755660045805!GO:0019867;outer membrane;0.00185673890945975!GO:0005798;Golgi-associated vesicle;0.00187349466166242!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0018798982312761!GO:0006405;RNA export from nucleus;0.00192070265137514!GO:0046822;regulation of nucleocytoplasmic transport;0.0019321169109598!GO:0031072;heat shock protein binding;0.0019421736189666!GO:0033673;negative regulation of kinase activity;0.0019421736189666!GO:0006469;negative regulation of protein kinase activity;0.0019421736189666!GO:0031625;ubiquitin protein ligase binding;0.00194767050597866!GO:0046489;phosphoinositide biosynthetic process;0.00197859924173167!GO:0043021;ribonucleoprotein binding;0.00197983011256961!GO:0003899;DNA-directed RNA polymerase activity;0.00198233961605503!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00201118217935186!GO:0042802;identical protein binding;0.00202856527699647!GO:0006650;glycerophospholipid metabolic process;0.00209074274768585!GO:0051325;interphase;0.00209074274768585!GO:0008017;microtubule binding;0.00211613878422758!GO:0031968;organelle outer membrane;0.00218891435324046!GO:0005741;mitochondrial outer membrane;0.00225258415054995!GO:0051252;regulation of RNA metabolic process;0.00225258415054995!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00241529884965738!GO:0005096;GTPase activator activity;0.00251844929698284!GO:0009109;coenzyme catabolic process;0.00253123123343552!GO:0006338;chromatin remodeling;0.00253786695906351!GO:0000087;M phase of mitotic cell cycle;0.00266006882686051!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00278477671631474!GO:0051090;regulation of transcription factor activity;0.00278686568138312!GO:0051223;regulation of protein transport;0.00285461416221449!GO:0045893;positive regulation of transcription, DNA-dependent;0.00285850954341229!GO:0044452;nucleolar part;0.00293602050604681!GO:0005765;lysosomal membrane;0.00295529722350062!GO:0008022;protein C-terminus binding;0.00300647836292384!GO:0044437;vacuolar part;0.0031301508822445!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00313496558369013!GO:0000082;G1/S transition of mitotic cell cycle;0.00320231377538341!GO:0007067;mitosis;0.003279953922791!GO:0008139;nuclear localization sequence binding;0.00328969646856037!GO:0051348;negative regulation of transferase activity;0.00332039703341388!GO:0030518;steroid hormone receptor signaling pathway;0.00336196652998992!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00336625773591839!GO:0016790;thiolester hydrolase activity;0.00345455000643295!GO:0005669;transcription factor TFIID complex;0.00367929705430896!GO:0043488;regulation of mRNA stability;0.00369436974997877!GO:0043487;regulation of RNA stability;0.00369436974997877!GO:0046983;protein dimerization activity;0.00372623307722217!GO:0009889;regulation of biosynthetic process;0.00372957369239875!GO:0005684;U2-dependent spliceosome;0.00381379596207175!GO:0031902;late endosome membrane;0.00386733558959986!GO:0016584;nucleosome positioning;0.003912710593144!GO:0003682;chromatin binding;0.00393599343657302!GO:0000786;nucleosome;0.00397551376457591!GO:0046474;glycerophospholipid biosynthetic process;0.00398671055289205!GO:0030658;transport vesicle membrane;0.0040777231005676!GO:0045603;positive regulation of endothelial cell differentiation;0.00457060330093355!GO:0006383;transcription from RNA polymerase III promoter;0.00471548367470618!GO:0005048;signal sequence binding;0.00476294249178206!GO:0003746;translation elongation factor activity;0.00483402986837844!GO:0007034;vacuolar transport;0.00490107281670649!GO:0016585;chromatin remodeling complex;0.00499599754058312!GO:0003678;DNA helicase activity;0.00541859027751061!GO:0016311;dephosphorylation;0.00551773420327748!GO:0051251;positive regulation of lymphocyte activation;0.00554228027606518!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00560913288320778!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00608953672031357!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00608953672031357!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00608953672031357!GO:0030258;lipid modification;0.00624084531866311!GO:0051336;regulation of hydrolase activity;0.00624529966822376!GO:0000118;histone deacetylase complex;0.00643807869193638!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00668993547028003!GO:0003725;double-stranded RNA binding;0.00702072154156092!GO:0017091;AU-rich element binding;0.00717167262675756!GO:0050779;RNA destabilization;0.00717167262675756!GO:0000289;poly(A) tail shortening;0.00717167262675756!GO:0003711;transcription elongation regulator activity;0.00724385614813823!GO:0051338;regulation of transferase activity;0.00728158573280256!GO:0043549;regulation of kinase activity;0.00729416853490962!GO:0043414;biopolymer methylation;0.00780512625545198!GO:0051187;cofactor catabolic process;0.00787601299168567!GO:0004722;protein serine/threonine phosphatase activity;0.00810682449896629!GO:0000049;tRNA binding;0.00852748816677863!GO:0019901;protein kinase binding;0.00858579700154802!GO:0051092;activation of NF-kappaB transcription factor;0.00869052962201226!GO:0006818;hydrogen transport;0.0087025827255241!GO:0048500;signal recognition particle;0.00890008217541007!GO:0051052;regulation of DNA metabolic process;0.00893261964293758!GO:0006984;ER-nuclear signaling pathway;0.00897428219619572!GO:0031982;vesicle;0.0090038949876791!GO:0042101;T cell receptor complex;0.00903014981688053!GO:0003684;damaged DNA binding;0.009149964123322!GO:0015923;mannosidase activity;0.00937719983559397!GO:0045321;leukocyte activation;0.00977952261708567!GO:0030660;Golgi-associated vesicle membrane;0.00989953427663409!GO:0030521;androgen receptor signaling pathway;0.0101133634913869!GO:0051059;NF-kappaB binding;0.0101889376986504!GO:0008276;protein methyltransferase activity;0.0102626767375447!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0103236285496952!GO:0000287;magnesium ion binding;0.010767563761071!GO:0030522;intracellular receptor-mediated signaling pathway;0.0109755969014312!GO:0015992;proton transport;0.0110832709619098!GO:0043681;protein import into mitochondrion;0.0113303481714831!GO:0051235;maintenance of localization;0.0117840718425798!GO:0008637;apoptotic mitochondrial changes;0.0118724283381131!GO:0048487;beta-tubulin binding;0.0119332803036766!GO:0033549;MAP kinase phosphatase activity;0.0119332803036766!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0119332803036766!GO:0006376;mRNA splice site selection;0.0122049411413495!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0122049411413495!GO:0033116;ER-Golgi intermediate compartment membrane;0.0122411011365793!GO:0006919;caspase activation;0.0123547544036635!GO:0004527;exonuclease activity;0.0123678074180721!GO:0032508;DNA duplex unwinding;0.0126124961081926!GO:0032392;DNA geometric change;0.0126124961081926!GO:0045859;regulation of protein kinase activity;0.0131111270611986!GO:0043407;negative regulation of MAP kinase activity;0.0134095960492888!GO:0032200;telomere organization and biogenesis;0.0134541498153392!GO:0000723;telomere maintenance;0.0134541498153392!GO:0043087;regulation of GTPase activity;0.013656406465888!GO:0005657;replication fork;0.0137998569939361!GO:0008601;protein phosphatase type 2A regulator activity;0.0139462511676811!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0141023810919328!GO:0031988;membrane-bound vesicle;0.0141023810919328!GO:0030968;unfolded protein response;0.0142638829821302!GO:0032259;methylation;0.0143450277070452!GO:0008312;7S RNA binding;0.0147005599888019!GO:0009893;positive regulation of metabolic process;0.0147223350800347!GO:0022890;inorganic cation transmembrane transporter activity;0.0147633424445034!GO:0030127;COPII vesicle coat;0.0149970433085515!GO:0012507;ER to Golgi transport vesicle membrane;0.0149970433085515!GO:0043621;protein self-association;0.0151511469773545!GO:0005762;mitochondrial large ribosomal subunit;0.0154133986184365!GO:0000315;organellar large ribosomal subunit;0.0154133986184365!GO:0004672;protein kinase activity;0.0155150756207837!GO:0016569;covalent chromatin modification;0.0157025371030493!GO:0040029;regulation of gene expression, epigenetic;0.0157025371030493!GO:0051098;regulation of binding;0.0157700912342138!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0158580434568093!GO:0016741;transferase activity, transferring one-carbon groups;0.0158845109035704!GO:0008168;methyltransferase activity;0.0159109063311162!GO:0046854;phosphoinositide phosphorylation;0.0167050117536425!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0167054992263552!GO:0016605;PML body;0.0169522326879523!GO:0047485;protein N-terminus binding;0.0171798015903543!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0172127696619893!GO:0019900;kinase binding;0.0172876692170738!GO:0000781;chromosome, telomeric region;0.0173065683757791!GO:0000059;protein import into nucleus, docking;0.0173980078344203!GO:0000209;protein polyubiquitination;0.0174799350100307!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0179287468062316!GO:0045047;protein targeting to ER;0.0179287468062316!GO:0030134;ER to Golgi transport vesicle;0.0184827218190602!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0184827218190602!GO:0019904;protein domain specific binding;0.0184827218190602!GO:0051539;4 iron, 4 sulfur cluster binding;0.0184827218190602!GO:0030118;clathrin coat;0.0188830178376565!GO:0007041;lysosomal transport;0.0188958300142126!GO:0004402;histone acetyltransferase activity;0.0189303208872019!GO:0004468;lysine N-acetyltransferase activity;0.0189303208872019!GO:0008033;tRNA processing;0.0189474509560128!GO:0050811;GABA receptor binding;0.0193068235463018!GO:0016570;histone modification;0.0193945212974081!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0193945212974081!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0198012820086569!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0199105425238613!GO:0033157;regulation of intracellular protein transport;0.0200099592696933!GO:0042306;regulation of protein import into nucleus;0.0200099592696933!GO:0006354;RNA elongation;0.0201224824128078!GO:0000119;mediator complex;0.0201224824128078!GO:0046834;lipid phosphorylation;0.0202763624706538!GO:0000279;M phase;0.0204954287577051!GO:0045926;negative regulation of growth;0.0208063174906051!GO:0019210;kinase inhibitor activity;0.0209831217089412!GO:0005869;dynactin complex;0.0213422249552176!GO:0006302;double-strand break repair;0.0217154499514455!GO:0007006;mitochondrial membrane organization and biogenesis;0.0220265186631484!GO:0019058;viral infectious cycle;0.0221648288153136!GO:0030880;RNA polymerase complex;0.0221673015063647!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0226636205466291!GO:0031410;cytoplasmic vesicle;0.0226636205466291!GO:0043281;regulation of caspase activity;0.0229129483952236!GO:0031461;cullin-RING ubiquitin ligase complex;0.0231549925232729!GO:0005819;spindle;0.02327710209781!GO:0046467;membrane lipid biosynthetic process;0.0233110373782042!GO:0042288;MHC class I protein binding;0.0236665465109582!GO:0030433;ER-associated protein catabolic process;0.0237189694267487!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0237189694267487!GO:0001726;ruffle;0.0237568234188381!GO:0035035;histone acetyltransferase binding;0.0237568234188381!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0241215689910746!GO:0043280;positive regulation of caspase activity;0.0244329064796054!GO:0005521;lamin binding;0.0244432998182164!GO:0043022;ribosome binding;0.0246443595778469!GO:0000060;protein import into nucleus, translocation;0.0248137414349043!GO:0006470;protein amino acid dephosphorylation;0.02481937253743!GO:0003702;RNA polymerase II transcription factor activity;0.0250989819551976!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0251565871333905!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0257471514289958!GO:0030145;manganese ion binding;0.0259515275404069!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0261327329646565!GO:0046426;negative regulation of JAK-STAT cascade;0.0261581964346783!GO:0016859;cis-trans isomerase activity;0.0261682719260052!GO:0016279;protein-lysine N-methyltransferase activity;0.026964546990845!GO:0018024;histone-lysine N-methyltransferase activity;0.026964546990845!GO:0016278;lysine N-methyltransferase activity;0.026964546990845!GO:0045792;negative regulation of cell size;0.0271232659716772!GO:0008624;induction of apoptosis by extracellular signals;0.0271232659716772!GO:0045185;maintenance of protein localization;0.0272211568848774!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0273383110628041!GO:0004860;protein kinase inhibitor activity;0.0276632799552494!GO:0004721;phosphoprotein phosphatase activity;0.0276632799552494!GO:0001667;ameboidal cell migration;0.0278898379929461!GO:0032027;myosin light chain binding;0.0278898379929461!GO:0016023;cytoplasmic membrane-bound vesicle;0.0279034900135383!GO:0007004;telomere maintenance via telomerase;0.0296378849808089!GO:0046979;TAP2 binding;0.0296378849808089!GO:0046977;TAP binding;0.0296378849808089!GO:0046978;TAP1 binding;0.0296378849808089!GO:0000159;protein phosphatase type 2A complex;0.0296605172520945!GO:0045746;negative regulation of Notch signaling pathway;0.029795392329329!GO:0006672;ceramide metabolic process;0.0300725249131437!GO:0032940;secretion by cell;0.030794365965562!GO:0006626;protein targeting to mitochondrion;0.0308029428655039!GO:0050852;T cell receptor signaling pathway;0.0313145435345524!GO:0000188;inactivation of MAPK activity;0.0313145435345524!GO:0006289;nucleotide-excision repair;0.0318288602683066!GO:0016791;phosphoric monoester hydrolase activity;0.0320341455339432!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0321377835201768!GO:0000428;DNA-directed RNA polymerase complex;0.0321377835201768!GO:0042054;histone methyltransferase activity;0.0324992657375658!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0325855416267924!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0325855416267924!GO:0030674;protein binding, bridging;0.0325957595138046!GO:0031647;regulation of protein stability;0.0325979836555112!GO:0004518;nuclease activity;0.0328078886312828!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0336101139828093!GO:0006839;mitochondrial transport;0.03391594771582!GO:0006914;autophagy;0.0339947130252701!GO:0006661;phosphatidylinositol biosynthetic process;0.0339947130252701!GO:0019079;viral genome replication;0.034022412362636!GO:0004197;cysteine-type endopeptidase activity;0.0341020770493494!GO:0043433;negative regulation of transcription factor activity;0.0341020770493494!GO:0046519;sphingoid metabolic process;0.0341730545770861!GO:0046578;regulation of Ras protein signal transduction;0.0343391381788745!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0343391381788745!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0343391381788745!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0343391381788745!GO:0030308;negative regulation of cell growth;0.0343731715470496!GO:0043284;biopolymer biosynthetic process;0.0343731715470496!GO:0031901;early endosome membrane;0.0354581812886697!GO:0042608;T cell receptor binding;0.0355489346352513!GO:0035026;leading edge cell differentiation;0.0355656168045316!GO:0008138;protein tyrosine/serine/threonine phosphatase activity;0.0356780108009914!GO:0000314;organellar small ribosomal subunit;0.0356780108009914!GO:0005763;mitochondrial small ribosomal subunit;0.0356780108009914!GO:0051087;chaperone binding;0.03576315531694!GO:0051091;positive regulation of transcription factor activity;0.0368085461284468!GO:0008536;Ran GTPase binding;0.0368750767570063!GO:0006506;GPI anchor biosynthetic process;0.037425602820247!GO:0006406;mRNA export from nucleus;0.0375032479135084!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0376135984542464!GO:0000776;kinetochore;0.0384953862260011!GO:0032318;regulation of Ras GTPase activity;0.0386640791083562!GO:0051457;maintenance of protein localization in nucleus;0.0392587263790493!GO:0030137;COPI-coated vesicle;0.0402337923149266!GO:0008180;signalosome;0.0403135967793769!GO:0030833;regulation of actin filament polymerization;0.0411245680243486!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0413128431802315!GO:0004177;aminopeptidase activity;0.0416685824725359!GO:0005099;Ras GTPase activator activity;0.0418038370861869!GO:0022411;cellular component disassembly;0.0418910836083351!GO:0006505;GPI anchor metabolic process;0.0419034591932351!GO:0006497;protein amino acid lipidation;0.0420226795541428!GO:0006595;polyamine metabolic process;0.0420279191907184!GO:0016853;isomerase activity;0.0429230202462944!GO:0032507;maintenance of cellular protein localization;0.0430337481361745!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0433892756035872!GO:0015002;heme-copper terminal oxidase activity;0.0433892756035872!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0433892756035872!GO:0004129;cytochrome-c oxidase activity;0.0433892756035872!GO:0006268;DNA unwinding during replication;0.0441905030743358!GO:0022406;membrane docking;0.044609107300982!GO:0048278;vesicle docking;0.044609107300982!GO:0042990;regulation of transcription factor import into nucleus;0.0446125909455749!GO:0042991;transcription factor import into nucleus;0.0446125909455749!GO:0005057;receptor signaling protein activity;0.0446405151733284!GO:0030176;integral to endoplasmic reticulum membrane;0.044731057916257!GO:0005095;GTPase inhibitor activity;0.0454821223951865!GO:0046982;protein heterodimerization activity;0.0465863463773899!GO:0032386;regulation of intracellular transport;0.0467218630502935!GO:0000303;response to superoxide;0.0471408335375468!GO:0045815;positive regulation of gene expression, epigenetic;0.0472025315802241!GO:0008097;5S rRNA binding;0.0480865183092908!GO:0015980;energy derivation by oxidation of organic compounds;0.0480865183092908!GO:0005791;rough endoplasmic reticulum;0.0481019315506135!GO:0004532;exoribonuclease activity;0.0486300377343033!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0486300377343033!GO:0006904;vesicle docking during exocytosis;0.0489045563211798!GO:0030867;rough endoplasmic reticulum membrane;0.0496239917119156
|sample_id=11307
|sample_id=11307
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=RORA:3.33170510617;PITX1..3:3.30176171631;RFX2..5_RFXANK_RFXAP:3.24899083717;PAX3,7:3.23105522459;CREB1:3.22913469144;ATF4:3.20240188101;ATF5_CREB3:3.1430591932;T:3.13210971248;RUNX1..3:2.97514297507;FOX{D1,D2}:2.83644709083;FOXP1:2.78134001247;BPTF:2.74383178893;FOXN1:2.57857407995;TBX4,5:2.46045653029;NFKB1_REL_RELA:2.32645094827;NKX6-1,2:2.27312763554;FOXO1,3,4:2.24316260391;ZBTB16:2.18694352176;FOX{F1,F2,J1}:2.17176186244;DMAP1_NCOR{1,2}_SMARC:2.11672570883;HMX1:2.11442164128;IKZF2:2.08660311702;PAX2:2.0766493643;ELF1,2,4:2.04475109449;TOPORS:1.94867768057;RFX1:1.94445094631;ETS1,2:1.73353209459;PAX4:1.71072350622;JUN:1.66411278961;SPI1:1.51911658748;CDX1,2,4:1.49769125136;ATF6:1.47225693104;NKX2-1,4:1.40038048939;TGIF1:1.29098415881;ZNF384:1.26585270379;BREu{core}:1.19725888698;TLX2:1.12170519711;HIF1A:1.0936226741;IRF1,2:1.0783685598;AIRE:1.02953020496;ATF2:0.958005665111;SPIB:0.919017725334;PPARG:0.9128149511;LEF1_TCF7_TCF7L1,2:0.909295233335;FOX{I1,J2}:0.796384524699;NANOG{mouse}:0.779505227721;SMAD1..7,9:0.691233668569;EGR1..3:0.616097287488;EP300:0.595704440847;MAFB:0.590260484584;FOSL2:0.503804544044;MYB:0.485682611307;TFDP1:0.47105965944;RREB1:0.449873467061;NKX3-1:0.424991565778;GATA6:0.406108941456;HBP1_HMGB_SSRP1_UBTF:0.347709887734;NFE2L1:0.325400639575;FOXD3:0.313672297681;HMGA1,2:0.295451927172;FOXL1:0.278017618188;GCM1,2:0.275624323456;MYFfamily:0.264312958815;FOS_FOS{B,L1}_JUN{B,D}:0.247872749409;ELK1,4_GABP{A,B1}:0.243520296459;SOX2:0.161828187931;NFIL3:0.160320729949;NFATC1..3:0.144721380768;PAX6:0.113855970025;SREBF1,2:0.110146609291;HOX{A6,A7,B6,B7}:0.0289858241667;BACH2:0.0160032532451;RXRA_VDR{dimer}:-0.0273038764401;CUX2:-0.0274955603152;POU2F1..3:-0.0373308128512;NFIX:-0.0487424389864;IRF7:-0.051691262565;NFE2:-0.0537212896241;SNAI1..3:-0.108529077288;ZEB1:-0.151443875807;PDX1:-0.229855489009;MED-1{core}:-0.245395513974;FOXP3:-0.247772619777;CEBPA,B_DDIT3:-0.257951762459;STAT2,4,6:-0.263831458852;EVI1:-0.266197328854;SOX5:-0.300979980119;SPZ1:-0.312943486771;NFY{A,B,C}:-0.323729852616;AR:-0.352240673554;MTF1:-0.353469365819;E2F1..5:-0.357949391154;AHR_ARNT_ARNT2:-0.359379121816;TFAP4:-0.368670384251;ZNF423:-0.369429071306;MTE{core}:-0.371347091716;HES1:-0.398294266378;NR5A1,2:-0.412828255386;PAX5:-0.417182928754;FOXM1:-0.443936261643;TFAP2B:-0.459620864942;GLI1..3:-0.464219138029;SRF:-0.467463914816;HNF4A_NR2F1,2:-0.477252982867;PRRX1,2:-0.504428044134;LMO2:-0.51644239943;MYOD1:-0.532379702026;NKX2-2,8:-0.544300000627;HOXA9_MEIS1:-0.553962482224;NFE2L2:-0.567808540975;bHLH_family:-0.597220455339;XBP1:-0.617963257407;NRF1:-0.618448328999;PBX1:-0.621257812078;ZFP161:-0.629315553658;DBP:-0.64103104062;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.661893817683;ALX4:-0.662431935078;UFEwm:-0.663947819095;HLF:-0.683367348566;OCT4_SOX2{dimer}:-0.704561248011;ZBTB6:-0.715110300221;YY1:-0.735074173569;NHLH1,2:-0.757691278762;CRX:-0.760546192657;TFCP2:-0.781018347628;HNF1A:-0.789082374597;STAT5{A,B}:-0.795007640861;ZIC1..3:-0.817480635929;POU1F1:-0.832651888878;PATZ1:-0.864511568197;TEF:-0.904232588127;REST:-0.91979699911;FOXA2:-0.929937743373;MZF1:-0.937427209372;TFAP2{A,C}:-0.939598709443;FOXQ1:-0.979167047809;GATA4:-0.98908387758;TAL1_TCF{3,4,12}:-0.992015582649;MAZ:-1.02874828245;PAX8:-1.06770443007;POU6F1:-1.07896184079;ALX1:-1.08512866202;HSF1,2:-1.08598695774;NANOG:-1.10923780946;HAND1,2:-1.12212119318;HIC1:-1.14068886329;SOX{8,9,10}:-1.1991401627;NR1H4:-1.20233572194;POU3F1..4:-1.23260244649;SP1:-1.25997980094;ZNF143:-1.26687960032;MEF2{A,B,C,D}:-1.26750168818;ZNF238:-1.31135776857;ZNF148:-1.32355661435;ESRRA:-1.38500423975;SOX17:-1.39511768344;TP53:-1.39808781951;RXR{A,B,G}:-1.41046020712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41238685249;CDC5L:-1.4397391755;LHX3,4:-1.46238827456;XCPE1{core}:-1.50980449067;STAT1,3:-1.51042669823;TBP:-1.53110680605;NR6A1:-1.53380098955;GFI1:-1.53507920254;HOX{A5,B5}:-1.61871003787;MYBL2:-1.67681279843;GTF2I:-1.71132864576;ONECUT1,2:-1.71653163891;RBPJ:-1.74240644172;ARID5B:-1.74849035267;NKX2-3_NKX2-5:-1.75090054363;HOX{A4,D4}:-1.77288905782;TEAD1:-1.77528094427;GFI1B:-1.79922424041;GTF2A1,2:-1.87325005641;EN1,2:-2.01275106648;ESR1:-2.02428421234;POU5F1:-2.06593860969;GZF1:-2.07949147465;TLX1..3_NFIC{dimer}:-2.16670201288;NKX3-2:-2.27135399945;EBF1:-2.30956028671;KLF4:-2.33092353578;IKZF1:-2.3966241777;PRDM1:-2.43240285126;VSX1,2:-2.45090768326;ADNP_IRX_SIX_ZHX:-2.55984303269;PAX1,9:-2.67968318146;NR3C1:-3.71531058595
|top_motifs=RORA:3.33170510617;PITX1..3:3.30176171631;RFX2..5_RFXANK_RFXAP:3.24899083717;PAX3,7:3.23105522459;CREB1:3.22913469144;ATF4:3.20240188101;ATF5_CREB3:3.1430591932;T:3.13210971248;RUNX1..3:2.97514297507;FOX{D1,D2}:2.83644709083;FOXP1:2.78134001247;BPTF:2.74383178893;FOXN1:2.57857407995;TBX4,5:2.46045653029;NFKB1_REL_RELA:2.32645094827;NKX6-1,2:2.27312763554;FOXO1,3,4:2.24316260391;ZBTB16:2.18694352176;FOX{F1,F2,J1}:2.17176186244;DMAP1_NCOR{1,2}_SMARC:2.11672570883;HMX1:2.11442164128;IKZF2:2.08660311702;PAX2:2.0766493643;ELF1,2,4:2.04475109449;TOPORS:1.94867768057;RFX1:1.94445094631;ETS1,2:1.73353209459;PAX4:1.71072350622;JUN:1.66411278961;SPI1:1.51911658748;CDX1,2,4:1.49769125136;ATF6:1.47225693104;NKX2-1,4:1.40038048939;TGIF1:1.29098415881;ZNF384:1.26585270379;BREu{core}:1.19725888698;TLX2:1.12170519711;HIF1A:1.0936226741;IRF1,2:1.0783685598;AIRE:1.02953020496;ATF2:0.958005665111;SPIB:0.919017725334;PPARG:0.9128149511;LEF1_TCF7_TCF7L1,2:0.909295233335;FOX{I1,J2}:0.796384524699;NANOG{mouse}:0.779505227721;SMAD1..7,9:0.691233668569;EGR1..3:0.616097287488;EP300:0.595704440847;MAFB:0.590260484584;FOSL2:0.503804544044;MYB:0.485682611307;TFDP1:0.47105965944;RREB1:0.449873467061;NKX3-1:0.424991565778;GATA6:0.406108941456;HBP1_HMGB_SSRP1_UBTF:0.347709887734;NFE2L1:0.325400639575;FOXD3:0.313672297681;HMGA1,2:0.295451927172;FOXL1:0.278017618188;GCM1,2:0.275624323456;MYFfamily:0.264312958815;FOS_FOS{B,L1}_JUN{B,D}:0.247872749409;ELK1,4_GABP{A,B1}:0.243520296459;SOX2:0.161828187931;NFIL3:0.160320729949;NFATC1..3:0.144721380768;PAX6:0.113855970025;SREBF1,2:0.110146609291;HOX{A6,A7,B6,B7}:0.0289858241667;BACH2:0.0160032532451;RXRA_VDR{dimer}:-0.0273038764401;CUX2:-0.0274955603152;POU2F1..3:-0.0373308128512;NFIX:-0.0487424389864;IRF7:-0.051691262565;NFE2:-0.0537212896241;SNAI1..3:-0.108529077288;ZEB1:-0.151443875807;PDX1:-0.229855489009;MED-1{core}:-0.245395513974;FOXP3:-0.247772619777;CEBPA,B_DDIT3:-0.257951762459;STAT2,4,6:-0.263831458852;EVI1:-0.266197328854;SOX5:-0.300979980119;SPZ1:-0.312943486771;NFY{A,B,C}:-0.323729852616;AR:-0.352240673554;MTF1:-0.353469365819;E2F1..5:-0.357949391154;AHR_ARNT_ARNT2:-0.359379121816;TFAP4:-0.368670384251;ZNF423:-0.369429071306;MTE{core}:-0.371347091716;HES1:-0.398294266378;NR5A1,2:-0.412828255386;PAX5:-0.417182928754;FOXM1:-0.443936261643;TFAP2B:-0.459620864942;GLI1..3:-0.464219138029;SRF:-0.467463914816;HNF4A_NR2F1,2:-0.477252982867;PRRX1,2:-0.504428044134;LMO2:-0.51644239943;MYOD1:-0.532379702026;NKX2-2,8:-0.544300000627;HOXA9_MEIS1:-0.553962482224;NFE2L2:-0.567808540975;bHLH_family:-0.597220455339;XBP1:-0.617963257407;NRF1:-0.618448328999;PBX1:-0.621257812078;ZFP161:-0.629315553658;DBP:-0.64103104062;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.661893817683;ALX4:-0.662431935078;UFEwm:-0.663947819095;HLF:-0.683367348566;OCT4_SOX2{dimer}:-0.704561248011;ZBTB6:-0.715110300221;YY1:-0.735074173569;NHLH1,2:-0.757691278762;CRX:-0.760546192657;TFCP2:-0.781018347628;HNF1A:-0.789082374597;STAT5{A,B}:-0.795007640861;ZIC1..3:-0.817480635929;POU1F1:-0.832651888878;PATZ1:-0.864511568197;TEF:-0.904232588127;REST:-0.91979699911;FOXA2:-0.929937743373;MZF1:-0.937427209372;TFAP2{A,C}:-0.939598709443;FOXQ1:-0.979167047809;GATA4:-0.98908387758;TAL1_TCF{3,4,12}:-0.992015582649;MAZ:-1.02874828245;PAX8:-1.06770443007;POU6F1:-1.07896184079;ALX1:-1.08512866202;HSF1,2:-1.08598695774;NANOG:-1.10923780946;HAND1,2:-1.12212119318;HIC1:-1.14068886329;SOX{8,9,10}:-1.1991401627;NR1H4:-1.20233572194;POU3F1..4:-1.23260244649;SP1:-1.25997980094;ZNF143:-1.26687960032;MEF2{A,B,C,D}:-1.26750168818;ZNF238:-1.31135776857;ZNF148:-1.32355661435;ESRRA:-1.38500423975;SOX17:-1.39511768344;TP53:-1.39808781951;RXR{A,B,G}:-1.41046020712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.41238685249;CDC5L:-1.4397391755;LHX3,4:-1.46238827456;XCPE1{core}:-1.50980449067;STAT1,3:-1.51042669823;TBP:-1.53110680605;NR6A1:-1.53380098955;GFI1:-1.53507920254;HOX{A5,B5}:-1.61871003787;MYBL2:-1.67681279843;GTF2I:-1.71132864576;ONECUT1,2:-1.71653163891;RBPJ:-1.74240644172;ARID5B:-1.74849035267;NKX2-3_NKX2-5:-1.75090054363;HOX{A4,D4}:-1.77288905782;TEAD1:-1.77528094427;GFI1B:-1.79922424041;GTF2A1,2:-1.87325005641;EN1,2:-2.01275106648;ESR1:-2.02428421234;POU5F1:-2.06593860969;GZF1:-2.07949147465;TLX1..3_NFIC{dimer}:-2.16670201288;NKX3-2:-2.27135399945;EBF1:-2.30956028671;KLF4:-2.33092353578;IKZF1:-2.3966241777;PRDM1:-2.43240285126;VSX1,2:-2.45090768326;ADNP_IRX_SIX_ZHX:-2.55984303269;PAX1,9:-2.67968318146;NR3C1:-3.71531058595
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11307-117C2;search_select_hide=table117:FF:11307-117C2
}}
}}

Latest revision as of 16:32, 3 June 2020

Name:CD8+ T Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11956,SRhi10010.CTTGTA
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage57 years old adult
sexmale
age57
cell typet cell, CD8+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberCD8T726
catalog number3H100-26-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005210
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11956 CAGE DRX008196 DRR009068
Accession ID Hg19

Library idBAMCTSS
CNhs11956 DRZ000493 DRZ001878
Accession ID Hg38

Library idBAMCTSS
CNhs11956 DRZ011843 DRZ013228
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00013692
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.CTTGTA sRNA-Seq DRX012364 DRR013812
Accession ID Hg19

Library idBAMCTSS
SRhi10010.CTTGTA DRZ003013


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.186
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
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C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.723
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11956

Jaspar motifP-value
MA0002.23.74238e-4
MA0003.10.335
MA0004.10.813
MA0006.10.333
MA0007.10.377
MA0009.10.0289
MA0014.10.647
MA0017.10.0966
MA0018.26.87486e-9
MA0019.10.718
MA0024.10.685
MA0025.10.268
MA0027.10.667
MA0028.10.153
MA0029.10.617
MA0030.10.0203
MA0031.13.20367e-5
MA0035.20.406
MA0038.10.016
MA0039.20.195
MA0040.10.609
MA0041.10.225
MA0042.10.594
MA0043.10.00373
MA0046.10.0339
MA0047.20.67
MA0048.10.64
MA0050.12.60542e-5
MA0051.10.0907
MA0052.10.0289
MA0055.10.583
MA0057.10.205
MA0058.10.746
MA0059.10.783
MA0060.10.0187
MA0061.11.36991e-10
MA0062.21.45051e-7
MA0065.20.881
MA0066.10.661
MA0067.10.00378
MA0068.10.9
MA0069.10.616
MA0070.10.413
MA0071.10.772
MA0072.10.0797
MA0073.10.531
MA0074.10.963
MA0076.10.0822
MA0077.10.0899
MA0078.10.974
MA0079.20.773
MA0080.22.18565e-8
MA0081.10.0425
MA0083.10.314
MA0084.10.244
MA0087.10.548
MA0088.10.197
MA0090.12.68744e-4
MA0091.10.279
MA0092.10.825
MA0093.10.713
MA0099.20.634
MA0100.10.905
MA0101.18.27359e-7
MA0102.20.74
MA0103.10.937
MA0104.20.715
MA0105.14.37854e-8
MA0106.10.0722
MA0107.12.31565e-6
MA0108.21.03725e-4
MA0111.10.408
MA0112.20.288
MA0113.10.487
MA0114.10.18
MA0115.10.244
MA0116.10.114
MA0117.10.0137
MA0119.10.268
MA0122.10.706
MA0124.10.0688
MA0125.10.068
MA0131.10.0812
MA0135.10.178
MA0136.19.32993e-12
MA0137.20.0313
MA0138.20.0593
MA0139.10.841
MA0140.10.672
MA0141.10.186
MA0142.10.124
MA0143.10.206
MA0144.10.192
MA0145.10.0234
MA0146.10.767
MA0147.10.638
MA0148.11
MA0149.10.61
MA0150.10.286
MA0152.10.00132
MA0153.10.144
MA0154.10.779
MA0155.10.182
MA0156.12.59997e-7
MA0157.10.00238
MA0159.10.989
MA0160.10.651
MA0162.10.355
MA0163.10.0205
MA0164.10.592
MA0258.10.964
MA0259.10.767



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11956

Novel motifP-value
10.954
100.00619
1000.735
1010.186
1020.774
1030.28
1040.929
1050.91
1060.124
1070.0632
1080.749
1090.986
110.74
1100.36
1110.476
1120.802
1130.26
1140.701
1150.566
1160.192
1170.0079
1180.537
1190.585
120.78
1200.253
1210.601
1220.727
1233.68154e-6
1240.972
1250.901
1260.702
1270.397
1280.772
1290.155
130.672
1300.146
1310.228
1320.284
1330.816
1340.676
1350.185
1360.739
1370.0626
1380.69
1390.102
140.492
1400.799
1410.948
1420.326
1430.0338
1440.997
1450.499
1460.361
1470.0418
1480.259
1490.216
150.456
1500.828
1510.496
1520.917
1530.404
1540.0813
1550.0925
1560.909
1570.726
1580.0109
1590.881
160.229
1600.0671
1610.676
1620.0589
1630.651
1640.055
1650.866
1660.544
1670.121
1680.41
1690.282
170.548
180.762
190.0616
20.188
200.142
210.999
220.146
230.732
240.379
250.238
260.996
270.461
280.308
290.0953
30.588
300.0358
310.564
320.0373
330.593
340.251
350.342
360.187
370.359
380.598
390.509
40.8
400.803
410.237
420.4
430.618
440.605
450.101
460.912
470.763
480.941
490.185
50.832
500.435
510.977
520.958
530.243
540.945
550.847
560.726
570.977
580.21
590.219
60.909
600.607
610.282
620.369
630.827
640.986
650.534
660.318
670.475
680.851
690.873
70.842
700.2
710.265
720.594
730.498
740.545
750.0558
760.0946
770.00272
780.724
790.586
80.302
800.173
810.906
820.667
830.782
840.115
850.665
860.0384
870.957
880.947
890.00157
90.579
900.664
910.791
920.909
930.958
940.325
950.203
960.792
970.214
980.529
998.09635e-6



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11956


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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