FF:11268-116G8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005836 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005836 | ||
|accession_numbers=CAGE;DRX008243;DRR009115;DRZ000540;DRZ001925;DRZ011890;DRZ013275 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037205;DRR041571;DRZ007213 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000059 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def="A fibroblast from cardiac tissue." [GOC:tfm] | |def="A fibroblast from cardiac tissue." [GOC:tfm] | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11268-116G8 | |id=FF:11268-116G8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000059 | ||
|is_obsolete= | |||
|library_id=CNhs12498 | |||
|library_id_phase_based=2:CNhs12498 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11268 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TGACCA.11268 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11268 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TGACCA.11268 | |||
|name=Fibroblast - Cardiac, donor1 | |name=Fibroblast - Cardiac, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12498,LSID916,release011,COMPLETED | |profile_hcage=CNhs12498,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.03299516705659,0,0.362529138108376,0.405287514971519,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539060578942455,0,0,0.096656598571488,0,0,0.228655496721894,0,0,0.377951574727979,0,0,0,0,0,0,0,0,0,0,0,0,0.249877808595661,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0971187613767046,0,0.229621031747347,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157668923714332,0,0,0,0.0350049909071819,0.108748232455077,0,0,0,0,-0.0980353512377064,0.0248294956940808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.275145864991027,0.438860830804405,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,0.0368219457548326,0.284948942311015,0,0,0.0770382715098945,0,0.326613392989952,0,0,0,0,0,0,0.193313197142976,0.452050765051878,0,0.276200841400637,0,0,0,0,0.060837319034889,-0.305472230898407,0,-0.0776014625780215,0.124968936065608,0,0,0,0,0.395896760462063,0,-0.120879483793741,-0.0827201683234173,0.105001804887145,0.409369674069061,-0.055712496781182,0,0,0,0.245485662221486,0.444526164225943,0,0,0.321068541465055,0.26149877465627,0,0,1.10417482115339,0,0.143645482797316,0.324469510654102,0,0,0,0,0,0,0.193313197142976,0,0,0,0,0,0,0.253395174167295,-0.326988596678969,0,0,0,0,-0.0194646959722761,0,0,-0.179972958813591,-0.022320758689484,0,-0.184985231579725,0,-0.302389727009913,0.141241606085801,0.039490012426303,0.144417715215889,0.179211543618813,0.00333147759312874,0,0.266894004253968,-0.0470626800469367,-0.0334870140807072,0.0517366677122657,0.0329863689076098,0.23980334404027,-0.128847024512629,0,0,0,0.0548457953397659,0,-0.0318298484848079,-0.0616506296422864,0.0849921284260165,0.19401464499748,0.0340421788774845,0.0601166614018445,0.224356542328031,0.47137563605017,-0.264123255753619,0.0645419974754187,0.614614512840023,0,0,0,-0.0342550885053706,0.0340774754698728,0.204163409398516,0,0.0269307026958603,0.124968936065608,0.096656598571488,0.14604788165262,-0.00637544092660836,0.326613392989952,0,0.113606358419471,0,0,0,0,0.193313197142976,0.237083001108878,-0.0285839785233254,0.0937578314344071,0,0.0134224916252933,0,0.0934515252053855,0,-0.517331280408174,0.0287273900776974,-0.104760955218316,-0.0295958815106487,0,0.0222089332098447,0.30206994811971,0.0800993401138421,0.217496464910153,-0.0584468268118252,-0.403858540785779,-0.51506745460735,0.0350049909071819,-0.360475779955739,0.0690055005495626,0.105186364667688,0,0.0900524419419708,0.17586675860539,-0.00524823138078298,0.00745923737886151,0,0.135417983879788,0,-0.42545813248773,0,-0.140756181599796,0.241041459642704,-0.439289374580686,-0.109061059193507,0,-0.105379729024981,1.29055656506224,0,0.0542290198179715,0,0.193313197142976,0.278097001499848,0.157668923714332,-0.0183372307216131,0.0543237404637814,0,0.276352907166143,0,0,0.244173251526441,0.0911373552255632,0,0.049315916488468,0.0306883560884941,-0.175751956360807,0.312493011399553,0,0,0.301217728269711,0,0,0.249436826408884,0.0830090200658504,0.0201079463432569,-0.253326341486756,0,0.307979424268177,0,0,-0.177527765965176,0,0.0651406106981675,0,0,0.254436061820641,0,0,0,0.510908164506841,0.00134792073320033,0,0,0,0,0,0,0,-0.279165145745741,-0.161520133073472,0,0.236685502188871,0,0,0,0,0,0.0639070819266314,0,0.998731817067823,0.650235573224997,0.0059545716497855,-0.12301741567642,0.096656598571488,0,0,0,0.110889990436477,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.266367432079183,0,0,0,0.0496589913881615,0,0,0,0,-0.100408422211085,0,0,-0.0517595413819371,0,0.108671719295276,0.24503151344311,0,-0.19989903285749,0.462779886153439,0.335528445498214,0,0,0.1671169530446,0,0.096656598571488,-0.0623471291728966,-0.0619471435440757,0,-0.0209247759461169,0,0,0,0,0,0,0.214149572434732,0,0,0,0,0,0,0,0,0,0,0,-0.00263299833098496,-0.0922240566585104,0.0224585290166962,0,0,0,0,0,0,-0.0241060230789031,-0.13600460823762,0,0,0,0,0,0,0,0,0.168465330638648,0,0,0.326613392989952,0,0,0.229621031747347,0,0,0,0,0.382110945108552,0,0,0.362529138108376,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.217443845454699,0,0,0,0,0,0,0,0.545156284371105,0,0.428464084834487,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.03299516705659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559383207783581,0,0.201780025522023,0.0843260978894026,0,0,0.310792640309862,0,0,0,0,0,0,0.065316174542961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0.193313197142976,0,0,0.228655496721894,0,0,-0.0920328098005262,0,0,0,0,0.193313197142976,0,-0.0737447982394659,0.589892594261123,-0.00203722406263257,0,0,0.193313197142976,0.256503068506276,0,0,0.109617202710785,0,0.259836005571051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539060578942455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0.096656598571488,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0,0,0,0,0,0.113294728874338,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0.193313197142976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193313197142976,0,0,0,0.234462403351496,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.34408745260446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304860847711202,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.63989127030189,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257297556218336,0,0,0.3955694722282,0,0,0,0,0,0,0,0,0,0,0,0,0.265293213839826,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.1428768290184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263720589139978,0.438860830804405,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA306-R10f | |rna_catalog_number=CA306-R10f | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116G8 | |rna_tube_id=116G8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.TGACCA | |||
|sample_age=embryo 22week | |sample_age=embryo 22week | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.00908784575532e-218!GO:0005737;cytoplasm;5.93652907023949e-206!GO:0043226;organelle;1.70207988942274e-169!GO:0043229;intracellular organelle;3.04883615889607e-169!GO:0043231;intracellular membrane-bound organelle;1.4899624313785e-158!GO:0043227;membrane-bound organelle;3.3184439446554e-158!GO:0044444;cytoplasmic part;5.57900019309471e-146!GO:0044422;organelle part;1.25558055127054e-131!GO:0044446;intracellular organelle part;2.54125683455581e-130!GO:0032991;macromolecular complex;4.86946739945392e-96!GO:0005515;protein binding;7.59539556836789e-95!GO:0030529;ribonucleoprotein complex;1.15437306867735e-81!GO:0044237;cellular metabolic process;4.16405539921544e-74!GO:0044238;primary metabolic process;1.12628996693785e-73!GO:0005739;mitochondrion;9.24646065821651e-66!GO:0043170;macromolecule metabolic process;1.23753867117697e-65!GO:0043233;organelle lumen;2.42044798042949e-64!GO:0031974;membrane-enclosed lumen;2.42044798042949e-64!GO:0003723;RNA binding;3.37799281871029e-61!GO:0044428;nuclear part;4.83377939710721e-57!GO:0019538;protein metabolic process;1.43197188566483e-54!GO:0005840;ribosome;9.77883103762855e-54!GO:0016043;cellular component organization and biogenesis;2.54742191342242e-53!GO:0006412;translation;4.06960648139218e-52!GO:0005634;nucleus;3.41534705502867e-50!GO:0044260;cellular macromolecule metabolic process;1.95422289273972e-49!GO:0043234;protein complex;2.33301411104025e-49!GO:0031090;organelle membrane;1.31107470335176e-48!GO:0044267;cellular protein metabolic process;3.28171097025851e-48!GO:0003735;structural constituent of ribosome;1.93885279890313e-47!GO:0009058;biosynthetic process;1.36248331268082e-45!GO:0044429;mitochondrial part;1.677984435111e-44!GO:0044249;cellular biosynthetic process;1.20488065247285e-42!GO:0009059;macromolecule biosynthetic process;2.05693840833648e-42!GO:0005829;cytosol;3.17926799101831e-42!GO:0033279;ribosomal subunit;9.53442249943702e-42!GO:0015031;protein transport;8.11270575020511e-41!GO:0033036;macromolecule localization;1.65011329931486e-40!GO:0006396;RNA processing;2.67704356611396e-40!GO:0045184;establishment of protein localization;3.64290212107715e-38!GO:0031967;organelle envelope;3.72178516623578e-38!GO:0008104;protein localization;6.91428636828173e-38!GO:0031975;envelope;8.97561473167281e-38!GO:0043228;non-membrane-bound organelle;1.78621095501887e-35!GO:0043232;intracellular non-membrane-bound organelle;1.78621095501887e-35!GO:0031981;nuclear lumen;3.19614389525928e-35!GO:0046907;intracellular transport;5.09873801835701e-33!GO:0006996;organelle organization and biogenesis;1.33200504310954e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.39777539863666e-31!GO:0016071;mRNA metabolic process;3.59929190016817e-31!GO:0065003;macromolecular complex assembly;1.03327486341945e-30!GO:0043283;biopolymer metabolic process;4.03843946520514e-30!GO:0008380;RNA splicing;1.45691615338271e-29!GO:0005740;mitochondrial envelope;6.55762226373489e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.34577927986037e-28!GO:0022607;cellular component assembly;3.03949054264611e-28!GO:0031966;mitochondrial membrane;2.44589005538269e-27!GO:0006886;intracellular protein transport;4.33013784811145e-27!GO:0006397;mRNA processing;1.29248573643525e-26!GO:0010467;gene expression;1.47061831571856e-26!GO:0019866;organelle inner membrane;2.55571041009191e-26!GO:0005743;mitochondrial inner membrane;1.46501239984909e-24!GO:0044445;cytosolic part;1.64942483704993e-24!GO:0006119;oxidative phosphorylation;3.89067423589105e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.34906909496683e-22!GO:0051649;establishment of cellular localization;1.35336394609439e-21!GO:0015934;large ribosomal subunit;1.39696534782056e-21!GO:0005783;endoplasmic reticulum;1.91329449906668e-21!GO:0051641;cellular localization;2.30539402241057e-21!GO:0015935;small ribosomal subunit;3.31790274982362e-21!GO:0044455;mitochondrial membrane part;5.60001836753689e-21!GO:0005681;spliceosome;6.20856248994819e-21!GO:0005654;nucleoplasm;1.06309307926356e-20!GO:0016462;pyrophosphatase activity;1.84079310646762e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.16109009214602e-19!GO:0031980;mitochondrial lumen;2.17850236806655e-19!GO:0005759;mitochondrial matrix;2.17850236806655e-19!GO:0012505;endomembrane system;2.28139578068605e-19!GO:0000166;nucleotide binding;2.37904762321941e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.81813051153043e-19!GO:0006457;protein folding;4.36645699115234e-19!GO:0048770;pigment granule;6.84932018203583e-19!GO:0042470;melanosome;6.84932018203583e-19!GO:0006259;DNA metabolic process;1.04785481267621e-18!GO:0017111;nucleoside-triphosphatase activity;1.25055324587011e-18!GO:0005746;mitochondrial respiratory chain;5.17141354128361e-18!GO:0007049;cell cycle;1.38120640428422e-17!GO:0016874;ligase activity;2.4622221431916e-17!GO:0044451;nucleoplasm part;4.93903636165017e-17!GO:0022618;protein-RNA complex assembly;5.66564098675049e-17!GO:0044432;endoplasmic reticulum part;1.7013240445044e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.08241609559191e-16!GO:0008134;transcription factor binding;4.63272917408122e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.91517491409187e-16!GO:0005794;Golgi apparatus;7.7189707715621e-16!GO:0005730;nucleolus;9.64704375688398e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.43081785997354e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.49500581538816e-15!GO:0003954;NADH dehydrogenase activity;1.49500581538816e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.49500581538816e-15!GO:0051186;cofactor metabolic process;2.1601688119775e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.16400837055974e-15!GO:0008135;translation factor activity, nucleic acid binding;8.0544199932896e-15!GO:0044265;cellular macromolecule catabolic process;1.4097250728552e-14!GO:0016192;vesicle-mediated transport;1.52479450041656e-14!GO:0006512;ubiquitin cycle;1.62873187163795e-14!GO:0005761;mitochondrial ribosome;1.62980605317506e-14!GO:0000313;organellar ribosome;1.62980605317506e-14!GO:0032553;ribonucleotide binding;3.07407738266817e-14!GO:0032555;purine ribonucleotide binding;3.07407738266817e-14!GO:0006605;protein targeting;4.65588642419896e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.69768809018055e-14!GO:0042773;ATP synthesis coupled electron transport;7.69768809018055e-14!GO:0043285;biopolymer catabolic process;9.41909756023695e-14!GO:0012501;programmed cell death;9.84124214314704e-14!GO:0051082;unfolded protein binding;9.94838832296279e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.11795909120279e-13!GO:0045271;respiratory chain complex I;1.11795909120279e-13!GO:0005747;mitochondrial respiratory chain complex I;1.11795909120279e-13!GO:0017076;purine nucleotide binding;1.19491474855578e-13!GO:0048193;Golgi vesicle transport;1.35375313977878e-13!GO:0043412;biopolymer modification;1.4058547402525e-13!GO:0009057;macromolecule catabolic process;1.47877997083965e-13!GO:0006915;apoptosis;3.18611722933987e-13!GO:0022402;cell cycle process;3.51148911130401e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.64574028200216e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.23489552161611e-13!GO:0006464;protein modification process;1.11446038304472e-12!GO:0048523;negative regulation of cellular process;1.28936550028351e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.92476089383544e-12!GO:0008219;cell death;1.92855621229609e-12!GO:0016265;death;1.92855621229609e-12!GO:0000278;mitotic cell cycle;2.17360660835757e-12!GO:0042254;ribosome biogenesis and assembly;2.79594241610624e-12!GO:0019941;modification-dependent protein catabolic process;3.3829346191151e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.3829346191151e-12!GO:0044257;cellular protein catabolic process;3.65328168101281e-12!GO:0006511;ubiquitin-dependent protein catabolic process;4.49722903474981e-12!GO:0044248;cellular catabolic process;5.05626772167146e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.93002495319101e-12!GO:0000375;RNA splicing, via transesterification reactions;5.93002495319101e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.93002495319101e-12!GO:0006732;coenzyme metabolic process;7.41673578853595e-12!GO:0030163;protein catabolic process;1.28485529020081e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.91412436121991e-11!GO:0009055;electron carrier activity;3.4314136436599e-11!GO:0005793;ER-Golgi intermediate compartment;3.89880396609209e-11!GO:0048519;negative regulation of biological process;4.84721190748578e-11!GO:0005789;endoplasmic reticulum membrane;5.14562087164723e-11!GO:0003743;translation initiation factor activity;5.26960108756618e-11!GO:0006413;translational initiation;6.19843981673245e-11!GO:0005524;ATP binding;1.12630942455119e-10!GO:0009259;ribonucleotide metabolic process;1.18829694660895e-10!GO:0003712;transcription cofactor activity;1.25317445057804e-10!GO:0043687;post-translational protein modification;1.36145063045076e-10!GO:0032559;adenyl ribonucleotide binding;1.3998720491957e-10!GO:0006163;purine nucleotide metabolic process;2.88171916762665e-10!GO:0005635;nuclear envelope;3.30361065798447e-10!GO:0008639;small protein conjugating enzyme activity;3.30897926248186e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.93755091287573e-10!GO:0009150;purine ribonucleotide metabolic process;6.61532461219479e-10!GO:0030554;adenyl nucleotide binding;6.90160545645082e-10!GO:0003676;nucleic acid binding;7.35852562607614e-10!GO:0004842;ubiquitin-protein ligase activity;7.83949534598285e-10!GO:0006446;regulation of translational initiation;1.49666510992205e-09!GO:0019787;small conjugating protein ligase activity;1.55119663164238e-09!GO:0006164;purine nucleotide biosynthetic process;1.67530775093603e-09!GO:0031965;nuclear membrane;1.80364113687292e-09!GO:0042623;ATPase activity, coupled;1.8130412764224e-09!GO:0009260;ribonucleotide biosynthetic process;1.98684778768252e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.038176179316e-09!GO:0006461;protein complex assembly;2.05993489846336e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.36963297445897e-09!GO:0006913;nucleocytoplasmic transport;2.89970737799351e-09!GO:0016887;ATPase activity;3.29318368462482e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.36941472155632e-09!GO:0051726;regulation of cell cycle;3.51549397934494e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.67939586134172e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.82597893107894e-09!GO:0008565;protein transporter activity;3.94549200689743e-09!GO:0044453;nuclear membrane part;4.05867331519097e-09!GO:0000074;regulation of progression through cell cycle;4.40267666299365e-09!GO:0043067;regulation of programmed cell death;4.61135614617094e-09!GO:0042981;regulation of apoptosis;5.65040135945612e-09!GO:0051169;nuclear transport;5.84313034400954e-09!GO:0006974;response to DNA damage stimulus;6.64146989054466e-09!GO:0009141;nucleoside triphosphate metabolic process;6.85385434780762e-09!GO:0030120;vesicle coat;7.52960831092284e-09!GO:0030662;coated vesicle membrane;7.52960831092284e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.54660128483436e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.54660128483436e-09!GO:0003924;GTPase activity;8.13329083225347e-09!GO:0051276;chromosome organization and biogenesis;8.63611297829561e-09!GO:0006323;DNA packaging;8.97455171971283e-09!GO:0006399;tRNA metabolic process;9.34134123450828e-09!GO:0051246;regulation of protein metabolic process;1.02635909397045e-08!GO:0015986;ATP synthesis coupled proton transport;1.31829204899833e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31829204899833e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.36027760238961e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.58482847517534e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.58482847517534e-08!GO:0016881;acid-amino acid ligase activity;1.71569661602724e-08!GO:0009060;aerobic respiration;2.28993563461431e-08!GO:0005768;endosome;2.70950348194988e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.27530145003547e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.27530145003547e-08!GO:0045333;cellular respiration;3.91061635113121e-08!GO:0017038;protein import;4.22077180473709e-08!GO:0016023;cytoplasmic membrane-bound vesicle;4.38576981761904e-08!GO:0005788;endoplasmic reticulum lumen;5.21042396508032e-08!GO:0019829;cation-transporting ATPase activity;5.35089547654085e-08!GO:0046034;ATP metabolic process;5.35089547654085e-08!GO:0006366;transcription from RNA polymerase II promoter;5.72338992974913e-08!GO:0005694;chromosome;6.2709300629935e-08!GO:0000087;M phase of mitotic cell cycle;6.51851691290941e-08!GO:0031988;membrane-bound vesicle;6.53029787576541e-08!GO:0007067;mitosis;6.80243597431921e-08!GO:0022403;cell cycle phase;7.72669516929851e-08!GO:0043069;negative regulation of programmed cell death;8.21972505536692e-08!GO:0016604;nuclear body;8.235723505587e-08!GO:0051188;cofactor biosynthetic process;8.55568234587297e-08!GO:0065004;protein-DNA complex assembly;8.74441772661479e-08!GO:0006364;rRNA processing;8.74508761292842e-08!GO:0006333;chromatin assembly or disassembly;9.7268504470872e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.03541194739207e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.03541194739207e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.03541194739207e-07!GO:0048475;coated membrane;1.14893657506548e-07!GO:0030117;membrane coat;1.14893657506548e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.17829364161765e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.24542815108892e-07!GO:0043066;negative regulation of apoptosis;1.58050147019194e-07!GO:0016072;rRNA metabolic process;1.74092311063997e-07!GO:0006754;ATP biosynthetic process;1.88602640745604e-07!GO:0006753;nucleoside phosphate metabolic process;1.88602640745604e-07!GO:0009117;nucleotide metabolic process;1.88632694376306e-07!GO:0016491;oxidoreductase activity;1.93206705678063e-07!GO:0043038;amino acid activation;2.11308706730896e-07!GO:0006418;tRNA aminoacylation for protein translation;2.11308706730896e-07!GO:0043039;tRNA aminoacylation;2.11308706730896e-07!GO:0016070;RNA metabolic process;2.28946082367289e-07!GO:0016049;cell growth;2.29504613935118e-07!GO:0008361;regulation of cell size;2.6532507222261e-07!GO:0009056;catabolic process;2.77630700266932e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.09296179063209e-07!GO:0044427;chromosomal part;3.18599062822798e-07!GO:0005643;nuclear pore;3.2114878750175e-07!GO:0065002;intracellular protein transport across a membrane;3.31741633686909e-07!GO:0006916;anti-apoptosis;3.36380787229558e-07!GO:0007005;mitochondrion organization and biogenesis;3.50835820216369e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.11556661595641e-07!GO:0006793;phosphorus metabolic process;4.52973179950197e-07!GO:0006796;phosphate metabolic process;4.52973179950197e-07!GO:0006260;DNA replication;5.18472430800447e-07!GO:0009719;response to endogenous stimulus;5.34242492764265e-07!GO:0044431;Golgi apparatus part;5.41165510180501e-07!GO:0000785;chromatin;6.82937343885007e-07!GO:0031410;cytoplasmic vesicle;7.75052217560162e-07!GO:0031982;vesicle;8.21671927739993e-07!GO:0001558;regulation of cell growth;8.81702937500032e-07!GO:0030036;actin cytoskeleton organization and biogenesis;9.53949358077945e-07!GO:0045259;proton-transporting ATP synthase complex;1.03459579746238e-06!GO:0008026;ATP-dependent helicase activity;1.23255327065403e-06!GO:0051301;cell division;1.32691935001318e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.32938802581312e-06!GO:0006099;tricarboxylic acid cycle;1.34134615634932e-06!GO:0046356;acetyl-CoA catabolic process;1.34134615634932e-06!GO:0016310;phosphorylation;1.35398668285271e-06!GO:0046930;pore complex;1.49659959942904e-06!GO:0006281;DNA repair;1.56333764851895e-06!GO:0004386;helicase activity;1.61548851261278e-06!GO:0008092;cytoskeletal protein binding;1.64101711860744e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.65458863726612e-06!GO:0006752;group transfer coenzyme metabolic process;1.78951550468598e-06!GO:0006334;nucleosome assembly;1.78951550468598e-06!GO:0051187;cofactor catabolic process;1.95697251359765e-06!GO:0016567;protein ubiquitination;2.05567355349685e-06!GO:0031252;leading edge;2.05922425491636e-06!GO:0031324;negative regulation of cellular metabolic process;2.09892033517807e-06!GO:0032446;protein modification by small protein conjugation;2.13331018330662e-06!GO:0030029;actin filament-based process;2.1659811468756e-06!GO:0016853;isomerase activity;2.58948468145751e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.80705655750139e-06!GO:0031497;chromatin assembly;2.85516520268781e-06!GO:0009109;coenzyme catabolic process;2.86692348536875e-06!GO:0050794;regulation of cellular process;3.07746912881292e-06!GO:0003714;transcription corepressor activity;3.37857253940811e-06!GO:0005525;GTP binding;3.42103583205347e-06!GO:0016607;nuclear speck;4.12095885775262e-06!GO:0016740;transferase activity;4.22351364608637e-06!GO:0005798;Golgi-associated vesicle;4.44193912981454e-06!GO:0006084;acetyl-CoA metabolic process;4.44193912981454e-06!GO:0048522;positive regulation of cellular process;5.40848632095077e-06!GO:0005773;vacuole;6.26612371758256e-06!GO:0007010;cytoskeleton organization and biogenesis;6.2772371586982e-06!GO:0016564;transcription repressor activity;6.346910828968e-06!GO:0009108;coenzyme biosynthetic process;6.4229725902549e-06!GO:0045786;negative regulation of progression through cell cycle;6.53943901996791e-06!GO:0044440;endosomal part;7.36140914039721e-06!GO:0010008;endosome membrane;7.36140914039721e-06!GO:0005762;mitochondrial large ribosomal subunit;7.57531369095796e-06!GO:0000315;organellar large ribosomal subunit;7.57531369095796e-06!GO:0015980;energy derivation by oxidation of organic compounds;7.58866361084634e-06!GO:0051789;response to protein stimulus;8.3472204341375e-06!GO:0006986;response to unfolded protein;8.3472204341375e-06!GO:0005667;transcription factor complex;9.19123655230755e-06!GO:0004298;threonine endopeptidase activity;9.52138919568228e-06!GO:0043623;cellular protein complex assembly;1.16019068766634e-05!GO:0000245;spliceosome assembly;1.2387731202136e-05!GO:0000151;ubiquitin ligase complex;1.26840368966793e-05!GO:0005770;late endosome;1.33588800046964e-05!GO:0050657;nucleic acid transport;1.40085369952375e-05!GO:0051236;establishment of RNA localization;1.40085369952375e-05!GO:0050658;RNA transport;1.40085369952375e-05!GO:0006403;RNA localization;1.47143283166546e-05!GO:0032561;guanyl ribonucleotide binding;1.53404584654996e-05!GO:0019001;guanyl nucleotide binding;1.53404584654996e-05!GO:0003697;single-stranded DNA binding;1.55548221844897e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.56585029280441e-05!GO:0005905;coated pit;1.62157298303437e-05!GO:0009892;negative regulation of metabolic process;1.63647048841587e-05!GO:0051170;nuclear import;1.64742829376131e-05!GO:0006091;generation of precursor metabolites and energy;2.00845044345582e-05!GO:0045454;cell redox homeostasis;2.23822064272136e-05!GO:0006606;protein import into nucleus;2.59397500548044e-05!GO:0050789;regulation of biological process;2.67796427753784e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.73959275131328e-05!GO:0016787;hydrolase activity;2.76183522128437e-05!GO:0019843;rRNA binding;2.82668896313686e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.94244335862995e-05!GO:0006613;cotranslational protein targeting to membrane;3.09941581014575e-05!GO:0016779;nucleotidyltransferase activity;3.1794093502885e-05!GO:0051329;interphase of mitotic cell cycle;3.78958237865795e-05!GO:0051325;interphase;3.95946712723197e-05!GO:0016568;chromatin modification;4.09013577322446e-05!GO:0043566;structure-specific DNA binding;4.43116947596374e-05!GO:0000139;Golgi membrane;4.90393574276832e-05!GO:0015630;microtubule cytoskeleton;4.91221580135686e-05!GO:0000323;lytic vacuole;5.15068421028741e-05!GO:0005764;lysosome;5.15068421028741e-05!GO:0003724;RNA helicase activity;5.51542592415264e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.72513043177612e-05!GO:0016563;transcription activator activity;5.84383265034623e-05!GO:0000279;M phase;5.99202401427146e-05!GO:0040008;regulation of growth;6.25422849809525e-05!GO:0003713;transcription coactivator activity;8.06807367483462e-05!GO:0030867;rough endoplasmic reticulum membrane;8.16404006662052e-05!GO:0019867;outer membrane;8.29959429423722e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.42242879515388e-05!GO:0031968;organelle outer membrane;9.45017277108651e-05!GO:0044262;cellular carbohydrate metabolic process;9.58406626030608e-05!GO:0008654;phospholipid biosynthetic process;9.99105217882341e-05!GO:0016044;membrane organization and biogenesis;0.0001081455161151!GO:0048518;positive regulation of biological process;0.000130414141012574!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00013609661261339!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000136430262740618!GO:0051427;hormone receptor binding;0.000153611614336072!GO:0003899;DNA-directed RNA polymerase activity;0.000174885448717932!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000179242584034193!GO:0005769;early endosome;0.000197564526337932!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000205193076318984!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000208244344970656!GO:0000314;organellar small ribosomal subunit;0.000211943516430986!GO:0005763;mitochondrial small ribosomal subunit;0.000211943516430986!GO:0005741;mitochondrial outer membrane;0.000228264101670914!GO:0016859;cis-trans isomerase activity;0.000228646243535304!GO:0048468;cell development;0.000228646243535304!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00025045649706593!GO:0030133;transport vesicle;0.000253423540525799!GO:0051028;mRNA transport;0.000260583350071549!GO:0005048;signal sequence binding;0.000286876206301951!GO:0009165;nucleotide biosynthetic process;0.000295699429542804!GO:0005885;Arp2/3 protein complex;0.000300244833294649!GO:0035257;nuclear hormone receptor binding;0.000307298663329819!GO:0007243;protein kinase cascade;0.00032254003585634!GO:0043284;biopolymer biosynthetic process;0.000334674784462273!GO:0043021;ribonucleoprotein binding;0.000362319943008857!GO:0030663;COPI coated vesicle membrane;0.000368153008209173!GO:0030126;COPI vesicle coat;0.000368153008209173!GO:0006414;translational elongation;0.00038997836425369!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000432664194676786!GO:0043681;protein import into mitochondrion;0.000463277788069144!GO:0016481;negative regulation of transcription;0.000470134968068784!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000519992184829777!GO:0008250;oligosaccharyl transferase complex;0.000599811005284408!GO:0004576;oligosaccharyl transferase activity;0.000641361309501647!GO:0008186;RNA-dependent ATPase activity;0.000678479592467676!GO:0007050;cell cycle arrest;0.00068552344650108!GO:0000786;nucleosome;0.000687730861386484!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000701684255237047!GO:0005791;rough endoplasmic reticulum;0.000734347682062192!GO:0051920;peroxiredoxin activity;0.000808581039354411!GO:0030658;transport vesicle membrane;0.000865158162847167!GO:0006612;protein targeting to membrane;0.000875739300474525!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000944620937605049!GO:0015399;primary active transmembrane transporter activity;0.000944620937605049!GO:0030137;COPI-coated vesicle;0.000962615860073922!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00105556911469298!GO:0030659;cytoplasmic vesicle membrane;0.00105624851621015!GO:0006626;protein targeting to mitochondrion;0.00105983977978364!GO:0030176;integral to endoplasmic reticulum membrane;0.00106119837452732!GO:0019899;enzyme binding;0.0010688476966332!GO:0048471;perinuclear region of cytoplasm;0.0010919974819782!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00118991583794584!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00121934630053408!GO:0030027;lamellipodium;0.00122788161895523!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0013057180486555!GO:0030132;clathrin coat of coated pit;0.00131613601608026!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00131870084313016!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00139362848489001!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00139362848489001!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00139362848489001!GO:0065009;regulation of a molecular function;0.00146005202393592!GO:0018196;peptidyl-asparagine modification;0.00162730265107087!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00162730265107087!GO:0007006;mitochondrial membrane organization and biogenesis;0.00163207913604062!GO:0004004;ATP-dependent RNA helicase activity;0.00179719472754886!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00202231032860215!GO:0006082;organic acid metabolic process;0.00202577674950572!GO:0016197;endosome transport;0.00202583877246848!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00214933618336881!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00214933618336881!GO:0030308;negative regulation of cell growth;0.0021550778460466!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00224854304916921!GO:0045792;negative regulation of cell size;0.00225954979929334!GO:0019752;carboxylic acid metabolic process;0.00226752708949053!GO:0046474;glycerophospholipid biosynthetic process;0.00227187900852198!GO:0030118;clathrin coat;0.00240729358065526!GO:0004177;aminopeptidase activity;0.00246299500078711!GO:0051128;regulation of cellular component organization and biogenesis;0.00258644369638192!GO:0030880;RNA polymerase complex;0.00259214151697428!GO:0006509;membrane protein ectodomain proteolysis;0.00261398887195117!GO:0033619;membrane protein proteolysis;0.00261398887195117!GO:0051168;nuclear export;0.00274399835123034!GO:0003746;translation elongation factor activity;0.00278497862302211!GO:0001726;ruffle;0.00282558079483212!GO:0030660;Golgi-associated vesicle membrane;0.00288067223571132!GO:0048487;beta-tubulin binding;0.00291374576192074!GO:0044433;cytoplasmic vesicle part;0.00314515425813379!GO:0009967;positive regulation of signal transduction;0.00320152898899878!GO:0042802;identical protein binding;0.00321243741388076!GO:0046483;heterocycle metabolic process;0.00322351725873561!GO:0003729;mRNA binding;0.0032415998532105!GO:0031072;heat shock protein binding;0.00330775002554353!GO:0051252;regulation of RNA metabolic process;0.00333607945092461!GO:0000059;protein import into nucleus, docking;0.00357379787205573!GO:0005819;spindle;0.00359259965504404!GO:0005813;centrosome;0.0036505206835268!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00365214842385226!GO:0006839;mitochondrial transport;0.00367289279635283!GO:0016126;sterol biosynthetic process;0.00372109062315848!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00379651807093811!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00381787683236195!GO:0003779;actin binding;0.00386298248657367!GO:0008632;apoptotic program;0.00386391932094708!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00392768000882473!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00392768000882473!GO:0015002;heme-copper terminal oxidase activity;0.00392768000882473!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00392768000882473!GO:0004129;cytochrome-c oxidase activity;0.00392768000882473!GO:0006979;response to oxidative stress;0.0042758719682789!GO:0030125;clathrin vesicle coat;0.00428818130758197!GO:0030665;clathrin coated vesicle membrane;0.00428818130758197!GO:0051287;NAD binding;0.00437113356005967!GO:0000082;G1/S transition of mitotic cell cycle;0.00441521578054968!GO:0043488;regulation of mRNA stability;0.00456827717792659!GO:0043487;regulation of RNA stability;0.00456827717792659!GO:0007264;small GTPase mediated signal transduction;0.00459354376258914!GO:0048500;signal recognition particle;0.00462770517961681!GO:0022890;inorganic cation transmembrane transporter activity;0.00464738184076479!GO:0033673;negative regulation of kinase activity;0.00469427378676103!GO:0006469;negative regulation of protein kinase activity;0.00469427378676103!GO:0006897;endocytosis;0.00471353983700368!GO:0010324;membrane invagination;0.00471353983700368!GO:0017166;vinculin binding;0.00475895871047918!GO:0015631;tubulin binding;0.00483523117493114!GO:0006383;transcription from RNA polymerase III promoter;0.00485768582738441!GO:0008139;nuclear localization sequence binding;0.00492378996396198!GO:0051348;negative regulation of transferase activity;0.00500155713032002!GO:0045893;positive regulation of transcription, DNA-dependent;0.00505566075187901!GO:0031543;peptidyl-proline dioxygenase activity;0.00531334004598262!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00534477299822068!GO:0006007;glucose catabolic process;0.00537166332877337!GO:0016363;nuclear matrix;0.00541537961099327!GO:0045941;positive regulation of transcription;0.00541850401693534!GO:0030521;androgen receptor signaling pathway;0.0054374208854876!GO:0043065;positive regulation of apoptosis;0.00560714357366437!GO:0008180;signalosome;0.0056711719436785!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00570230213775279!GO:0000428;DNA-directed RNA polymerase complex;0.00570230213775279!GO:0035258;steroid hormone receptor binding;0.00576808445798233!GO:0051087;chaperone binding;0.00578760453817254!GO:0005815;microtubule organizing center;0.0059553269468197!GO:0044452;nucleolar part;0.00601688812839158!GO:0043492;ATPase activity, coupled to movement of substances;0.00612267689151511!GO:0008610;lipid biosynthetic process;0.00632618468898053!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00637524472248344!GO:0043068;positive regulation of programmed cell death;0.00645220950751629!GO:0005684;U2-dependent spliceosome;0.00662224240478812!GO:0006891;intra-Golgi vesicle-mediated transport;0.00679662006623515!GO:0007040;lysosome organization and biogenesis;0.00681540804714323!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00681857742952307!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00682942074299165!GO:0008033;tRNA processing;0.00687269169419458!GO:0006402;mRNA catabolic process;0.00711689239553027!GO:0006950;response to stress;0.00720648366377631!GO:0006595;polyamine metabolic process;0.00748172427205032!GO:0006740;NADPH regeneration;0.00749667689515759!GO:0006098;pentose-phosphate shunt;0.00749667689515759!GO:0030041;actin filament polymerization;0.00761457660642921!GO:0030134;ER to Golgi transport vesicle;0.00775614870499477!GO:0008312;7S RNA binding;0.00781129777723702!GO:0065007;biological regulation;0.0079526987244032!GO:0005869;dynactin complex;0.00800260718990653!GO:0019798;procollagen-proline dioxygenase activity;0.0080579944375397!GO:0031418;L-ascorbic acid binding;0.00813845689693681!GO:0006261;DNA-dependent DNA replication;0.00814288577772717!GO:0006417;regulation of translation;0.00837060365228976!GO:0015992;proton transport;0.00859714053664649!GO:0012506;vesicle membrane;0.00862347875248305!GO:0008283;cell proliferation;0.00875069711154697!GO:0007033;vacuole organization and biogenesis;0.0089994521854447!GO:0031901;early endosome membrane;0.00911162341585856!GO:0030127;COPII vesicle coat;0.00918263519784663!GO:0012507;ER to Golgi transport vesicle membrane;0.00918263519784663!GO:0001666;response to hypoxia;0.00928678637424919!GO:0045936;negative regulation of phosphate metabolic process;0.00982500722703167!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00991278262806183!GO:0030833;regulation of actin filament polymerization;0.00998049786527363!GO:0043433;negative regulation of transcription factor activity;0.0100594809805188!GO:0046467;membrane lipid biosynthetic process;0.0100937741860992!GO:0007051;spindle organization and biogenesis;0.0100937741860992!GO:0030119;AP-type membrane coat adaptor complex;0.0102060609646276!GO:0006818;hydrogen transport;0.0102840168144973!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0103198774249194!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0103198774249194!GO:0045047;protein targeting to ER;0.0103198774249194!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0104196542963401!GO:0006778;porphyrin metabolic process;0.0106712543472546!GO:0033013;tetrapyrrole metabolic process;0.0106712543472546!GO:0045926;negative regulation of growth;0.0110075842148493!GO:0006695;cholesterol biosynthetic process;0.0111609744738253!GO:0045045;secretory pathway;0.0111689834482965!GO:0051098;regulation of binding;0.0111689834482965!GO:0045892;negative regulation of transcription, DNA-dependent;0.0112384028866892!GO:0005856;cytoskeleton;0.0112452483009127!GO:0000049;tRNA binding;0.0113744585785231!GO:0044420;extracellular matrix part;0.0113929524584586!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0116597346762359!GO:0008637;apoptotic mitochondrial changes;0.0118264349617709!GO:0008154;actin polymerization and/or depolymerization;0.0119437255477867!GO:0006401;RNA catabolic process;0.012154607578826!GO:0005637;nuclear inner membrane;0.0122028139316049!GO:0000902;cell morphogenesis;0.0124231522856858!GO:0032989;cellular structure morphogenesis;0.0124231522856858!GO:0005862;muscle thin filament tropomyosin;0.0125796095231424!GO:0005583;fibrillar collagen;0.0129534148763962!GO:0005581;collagen;0.0130854787250132!GO:0031529;ruffle organization and biogenesis;0.0132867788196482!GO:0043022;ribosome binding;0.0135580666297783!GO:0050681;androgen receptor binding;0.0136655138580695!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0138232332880407!GO:0033043;regulation of organelle organization and biogenesis;0.0138232332880407!GO:0051059;NF-kappaB binding;0.0138236740190954!GO:0001527;microfibril;0.0143200835077986!GO:0005832;chaperonin-containing T-complex;0.0149275651445904!GO:0031902;late endosome membrane;0.0152678354883339!GO:0031301;integral to organelle membrane;0.0152678354883339!GO:0016408;C-acyltransferase activity;0.0154221500436001!GO:0008286;insulin receptor signaling pathway;0.0155540345225666!GO:0006892;post-Golgi vesicle-mediated transport;0.0156367986397971!GO:0006144;purine base metabolic process;0.0166293374898759!GO:0030131;clathrin adaptor complex;0.0167483946510116!GO:0008022;protein C-terminus binding;0.0170005609488699!GO:0051101;regulation of DNA binding;0.0170234677031442!GO:0009116;nucleoside metabolic process;0.0173004340982828!GO:0005774;vacuolar membrane;0.0173004340982828!GO:0009112;nucleobase metabolic process;0.0175033653769386!GO:0051270;regulation of cell motility;0.0177296798761237!GO:0003690;double-stranded DNA binding;0.0185263440719294!GO:0016860;intramolecular oxidoreductase activity;0.0185263440719294!GO:0006520;amino acid metabolic process;0.0185276550691964!GO:0004674;protein serine/threonine kinase activity;0.0188313862707203!GO:0008047;enzyme activator activity;0.0188313862707203!GO:0042168;heme metabolic process;0.0190395190598593!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0197173333342644!GO:0008094;DNA-dependent ATPase activity;0.0197480816891191!GO:0016272;prefoldin complex;0.0200134245755392!GO:0031124;mRNA 3'-end processing;0.0200295680765625!GO:0007167;enzyme linked receptor protein signaling pathway;0.0201900256422436!GO:0031272;regulation of pseudopodium formation;0.0201900256422436!GO:0031269;pseudopodium formation;0.0201900256422436!GO:0031344;regulation of cell projection organization and biogenesis;0.0201900256422436!GO:0031268;pseudopodium organization and biogenesis;0.0201900256422436!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0201900256422436!GO:0031274;positive regulation of pseudopodium formation;0.0201900256422436!GO:0046489;phosphoinositide biosynthetic process;0.020491344527614!GO:0006779;porphyrin biosynthetic process;0.020538987074834!GO:0033014;tetrapyrrole biosynthetic process;0.020538987074834!GO:0003711;transcription elongation regulator activity;0.0209591941310817!GO:0051539;4 iron, 4 sulfur cluster binding;0.0216301275451373!GO:0003756;protein disulfide isomerase activity;0.0221657522523716!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0221657522523716!GO:0000339;RNA cap binding;0.0228007286549102!GO:0031326;regulation of cellular biosynthetic process;0.023242920900293!GO:0019318;hexose metabolic process;0.0235173486264545!GO:0005665;DNA-directed RNA polymerase II, core complex;0.023724760887833!GO:0008064;regulation of actin polymerization and/or depolymerization;0.023724760887833!GO:0042326;negative regulation of phosphorylation;0.0239503419965276!GO:0008652;amino acid biosynthetic process;0.024115080131665!GO:0050790;regulation of catalytic activity;0.0249551045986061!GO:0030865;cortical cytoskeleton organization and biogenesis;0.025411674906125!GO:0009889;regulation of biosynthetic process;0.0256650543531868!GO:0004860;protein kinase inhibitor activity;0.0256650543531868!GO:0008147;structural constituent of bone;0.0256954142534315!GO:0000075;cell cycle checkpoint;0.0263570362516044!GO:0005520;insulin-like growth factor binding;0.0263858137208437!GO:0003684;damaged DNA binding;0.0265692990257395!GO:0005874;microtubule;0.0265692990257395!GO:0000209;protein polyubiquitination;0.0268190910157401!GO:0008629;induction of apoptosis by intracellular signals;0.0268190910157401!GO:0008243;plasminogen activator activity;0.0273869960666927!GO:0046426;negative regulation of JAK-STAT cascade;0.0274169446406743!GO:0030032;lamellipodium biogenesis;0.0280648777239383!GO:0005657;replication fork;0.0281433047194295!GO:0003682;chromatin binding;0.0281433047194295!GO:0006650;glycerophospholipid metabolic process;0.0284534208663169!GO:0000287;magnesium ion binding;0.0289094694093395!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0289591561831731!GO:0050178;phenylpyruvate tautomerase activity;0.0292227837292292!GO:0006739;NADP metabolic process;0.0296071110708757!GO:0000096;sulfur amino acid metabolic process;0.0296071110708757!GO:0005996;monosaccharide metabolic process;0.0296506897867628!GO:0022415;viral reproductive process;0.0308432345230128!GO:0008538;proteasome activator activity;0.030979933408961!GO:0050811;GABA receptor binding;0.0309878037698905!GO:0046519;sphingoid metabolic process;0.0311572210291201!GO:0035035;histone acetyltransferase binding;0.0312489379285937!GO:0030518;steroid hormone receptor signaling pathway;0.0313706700913941!GO:0031625;ubiquitin protein ligase binding;0.0315456036844688!GO:0051540;metal cluster binding;0.0333464253439602!GO:0051536;iron-sulfur cluster binding;0.0333464253439602!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0345603068449914!GO:0004784;superoxide dismutase activity;0.0345603068449914!GO:0051052;regulation of DNA metabolic process;0.0345603068449914!GO:0007021;tubulin folding;0.0345603068449914!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0347446003460082!GO:0006783;heme biosynthetic process;0.0359669633401102!GO:0006354;RNA elongation;0.0360665699700823!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0361643544991961!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0361643544991961!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.036413411095704!GO:0030508;thiol-disulfide exchange intermediate activity;0.037370247527101!GO:0006611;protein export from nucleus;0.037370247527101!GO:0032535;regulation of cellular component size;0.0379269213099341!GO:0044437;vacuolar part;0.0379327958949902!GO:0006352;transcription initiation;0.0380481084460061!GO:0030832;regulation of actin filament length;0.0386277961665364!GO:0033239;negative regulation of amine metabolic process;0.0392560042698167!GO:0045763;negative regulation of amino acid metabolic process;0.0392560042698167!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0392560042698167!GO:0005938;cell cortex;0.0394403034404487!GO:0006672;ceramide metabolic process;0.0394948410448379!GO:0033559;unsaturated fatty acid metabolic process;0.040246679559857!GO:0006636;unsaturated fatty acid biosynthetic process;0.040246679559857!GO:0008287;protein serine/threonine phosphatase complex;0.0405623512912017!GO:0006096;glycolysis;0.0405623512912017!GO:0048144;fibroblast proliferation;0.0409558772119567!GO:0048145;regulation of fibroblast proliferation;0.0409558772119567!GO:0030911;TPR domain binding;0.0413223796926047!GO:0032508;DNA duplex unwinding;0.0416157765874522!GO:0032392;DNA geometric change;0.0416157765874522!GO:0030145;manganese ion binding;0.0417720504192065!GO:0031123;RNA 3'-end processing;0.0417720504192065!GO:0046365;monosaccharide catabolic process;0.042041781169263!GO:0009303;rRNA transcription;0.0423272153261728!GO:0040011;locomotion;0.0428259435292601!GO:0016301;kinase activity;0.0437770900002476!GO:0032906;transforming growth factor-beta2 production;0.0437919555022688!GO:0032909;regulation of transforming growth factor-beta2 production;0.0437919555022688!GO:0007088;regulation of mitosis;0.0440736826092036!GO:0016584;nucleosome positioning;0.0440736826092036!GO:0031371;ubiquitin conjugating enzyme complex;0.0446374552374822!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0448070859279067!GO:0006376;mRNA splice site selection;0.0448167846352965!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0448167846352965!GO:0030433;ER-associated protein catabolic process;0.0450397807782968!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0450397807782968!GO:0030031;cell projection biogenesis;0.0452506704762858!GO:0007346;regulation of progression through mitotic cell cycle;0.0452661343643756!GO:0006302;double-strand break repair;0.0455563802844584!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0475426621855573!GO:0004287;prolyl oligopeptidase activity;0.0476890290993492!GO:0030503;regulation of cell redox homeostasis;0.04772474190927!GO:0007030;Golgi organization and biogenesis;0.048280867464856!GO:0006607;NLS-bearing substrate import into nucleus;0.0484329290673164!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0484547436686932!GO:0009893;positive regulation of metabolic process;0.0484795125310468!GO:0007034;vacuolar transport;0.0486214827001869!GO:0016251;general RNA polymerase II transcription factor activity;0.0488297575460309!GO:0006984;ER-nuclear signaling pathway;0.0488750434107751!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0495560776556765!GO:0001725;stress fiber;0.0495560776556765!GO:0032432;actin filament bundle;0.0495560776556765!GO:0003678;DNA helicase activity;0.0497835672431174!GO:0006518;peptide metabolic process;0.0498048713713566 | |||
|sample_id=11268 | |sample_id=11268 | ||
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | |sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | ||
| Line 76: | Line 105: | ||
|sample_tissue=heart | |sample_tissue=heart | ||
|top_motifs=HOX{A5,B5}:1.7152184001;XBP1:1.48662197063;GTF2A1,2:1.4678860414;IKZF1:1.44848067223;NR3C1:1.40738796944;TEAD1:1.35090992626;HIF1A:1.30668004245;SRF:1.28165382793;GLI1..3:1.26131497575;NFE2L1:1.1300272652;ZIC1..3:1.07901975553;TBP:1.07437420906;ALX4:1.04868768607;HMX1:1.0380284994;GFI1B:1.02753633675;UFEwm:1.02176606425;TAL1_TCF{3,4,12}:0.992190517886;LHX3,4:0.960673994543;TLX1..3_NFIC{dimer}:0.937717246642;RXRA_VDR{dimer}:0.899688263545;SMAD1..7,9:0.894378066316;TFAP4:0.84397899064;HAND1,2:0.820533599703;XCPE1{core}:0.801627343876;GCM1,2:0.78169407207;EBF1:0.780326907516;ZBTB6:0.746672365649;PAX5:0.71106438162;TBX4,5:0.707257829881;ZNF148:0.704053317259;NKX3-2:0.651904582492;FOXM1:0.613430258268;MAZ:0.613259199424;MYBL2:0.609051999156;GTF2I:0.608092082793;EN1,2:0.593466983666;ONECUT1,2:0.593004049979;TP53:0.575420395183;KLF4:0.569877710874;STAT5{A,B}:0.569140295725;SOX17:0.560100811377;TFAP2B:0.559715414604;NKX3-1:0.554375484997;PATZ1:0.552729287914;PPARG:0.533536915512;ZNF238:0.528682234476;MEF2{A,B,C,D}:0.505184252756;AR:0.484352550483;EVI1:0.464364310587;RXR{A,B,G}:0.438641481018;NR5A1,2:0.435169756742;TFCP2:0.429799040433;ESR1:0.409578796733;ADNP_IRX_SIX_ZHX:0.398055806056;TOPORS:0.396094384142;MTE{core}:0.391540550025;HIC1:0.387090726768;POU3F1..4:0.382806422787;bHLH_family:0.381967459361;NKX2-1,4:0.374123872913;HES1:0.370162142645;ZNF423:0.354297919028;GFI1:0.345677273492;NR6A1:0.331388139249;ESRRA:0.319676083461;NANOG{mouse}:0.308221537639;NFIX:0.305866275174;GATA6:0.298843928497;STAT2,4,6:0.276232784459;MAFB:0.275200363326;EGR1..3:0.26848435053;REST:0.254470196212;NFE2L2:0.254015250197;ZNF384:0.222254434367;GATA4:0.216349650598;NFATC1..3:0.214971367897;SP1:0.202512811551;SPZ1:0.188254908943;TFAP2{A,C}:0.166264623586;LEF1_TCF7_TCF7L1,2:0.152033116034;HLF:0.110214596062;HOXA9_MEIS1:0.107103696645;SOX2:0.104299485816;RREB1:0.0847933618451;BACH2:0.0561670485502;PRDM1:0.0525325661929;HSF1,2:0.0337912150219;PAX8:0.0206057895084;FOS_FOS{B,L1}_JUN{B,D}:0.0190071299158;NHLH1,2:0.00593544540036;MZF1:-0.00993744796577;LMO2:-0.020086730413;ZNF143:-0.032112652036;MYFfamily:-0.0431466105905;HMGA1,2:-0.0499386420462;MTF1:-0.0628595657875;ATF6:-0.0706715856149;HNF1A:-0.0776751492289;GZF1:-0.0801542567699;POU2F1..3:-0.0983620561554;FOXL1:-0.0985689336974;PAX6:-0.110863343526;CDC5L:-0.122346357575;TFDP1:-0.127402178928;ATF2:-0.129559251795;AIRE:-0.131151354512;VSX1,2:-0.138244992343;CRX:-0.146114343565;NANOG:-0.153663332692;HNF4A_NR2F1,2:-0.160058811711;ELK1,4_GABP{A,B1}:-0.164613948396;SOX{8,9,10}:-0.168853822033;NKX2-2,8:-0.187115290797;FOSL2:-0.190718368048;TEF:-0.199712054531;EP300:-0.20451775117;E2F1..5:-0.209705022014;PAX1,9:-0.239933656135;PAX3,7:-0.247154494458;JUN:-0.247702178774;POU5F1:-0.249051887284;AHR_ARNT_ARNT2:-0.255189656529;POU1F1:-0.267285614848;HOX{A4,D4}:-0.267346799762;CEBPA,B_DDIT3:-0.274700880997;ARID5B:-0.280889594647;SNAI1..3:-0.290507460547;MYOD1:-0.299321578615;NFY{A,B,C}:-0.302416648971;PAX2:-0.32054151921;MYB:-0.333061800453;NRF1:-0.335376991057;PBX1:-0.358560879039;RUNX1..3:-0.377299250246;RFX1:-0.37980207342;NFE2:-0.383244007206;NFKB1_REL_RELA:-0.389929198332;ZFP161:-0.408541150193;YY1:-0.418719785017;SOX5:-0.422075451201;PRRX1,2:-0.429404992978;NKX6-1,2:-0.464470667891;SREBF1,2:-0.472907661767;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.479506070391;NFIL3:-0.489482768935;MED-1{core}:-0.507336459245;ALX1:-0.512252809208;PDX1:-0.524288128392;ZEB1:-0.529479540509;FOXA2:-0.540106776097;ELF1,2,4:-0.546224295096;TGIF1:-0.550961820815;ETS1,2:-0.55564749741;IRF1,2:-0.564675255004;NR1H4:-0.609079599559;CUX2:-0.61291424777;TLX2:-0.617329554968;NKX2-3_NKX2-5:-0.625752378756;HBP1_HMGB_SSRP1_UBTF:-0.653942843861;SPIB:-0.656254693953;ATF4:-0.656520947208;OCT4_SOX2{dimer}:-0.658745164708;BPTF:-0.675630537039;RORA:-0.682007791759;SPI1:-0.695436917266;DBP:-0.720512794444;CDX1,2,4:-0.731512869526;ATF5_CREB3:-0.735960261604;FOX{D1,D2}:-0.768454383396;BREu{core}:-0.77439329525;FOX{F1,F2,J1}:-0.821648156933;POU6F1:-0.826489139515;IRF7:-0.855928003798;FOXQ1:-0.876556869786;FOXP3:-0.903804096167;FOXO1,3,4:-0.943340089679;FOX{I1,J2}:-0.979298326931;IKZF2:-0.986188668853;CREB1:-1.01659363897;HOX{A6,A7,B6,B7}:-1.06916758417;STAT1,3:-1.07174538847;DMAP1_NCOR{1,2}_SMARC:-1.16169862589;FOXP1:-1.19157882274;T:-1.22563209356;PAX4:-1.24731738362;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.29517131638;RBPJ:-1.3734445448;PITX1..3:-1.3915867758;ZBTB16:-1.42728170112;FOXN1:-1.47042411851;RFX2..5_RFXANK_RFXAP:-1.59530913331;FOXD3:-1.69593013024 | |top_motifs=HOX{A5,B5}:1.7152184001;XBP1:1.48662197063;GTF2A1,2:1.4678860414;IKZF1:1.44848067223;NR3C1:1.40738796944;TEAD1:1.35090992626;HIF1A:1.30668004245;SRF:1.28165382793;GLI1..3:1.26131497575;NFE2L1:1.1300272652;ZIC1..3:1.07901975553;TBP:1.07437420906;ALX4:1.04868768607;HMX1:1.0380284994;GFI1B:1.02753633675;UFEwm:1.02176606425;TAL1_TCF{3,4,12}:0.992190517886;LHX3,4:0.960673994543;TLX1..3_NFIC{dimer}:0.937717246642;RXRA_VDR{dimer}:0.899688263545;SMAD1..7,9:0.894378066316;TFAP4:0.84397899064;HAND1,2:0.820533599703;XCPE1{core}:0.801627343876;GCM1,2:0.78169407207;EBF1:0.780326907516;ZBTB6:0.746672365649;PAX5:0.71106438162;TBX4,5:0.707257829881;ZNF148:0.704053317259;NKX3-2:0.651904582492;FOXM1:0.613430258268;MAZ:0.613259199424;MYBL2:0.609051999156;GTF2I:0.608092082793;EN1,2:0.593466983666;ONECUT1,2:0.593004049979;TP53:0.575420395183;KLF4:0.569877710874;STAT5{A,B}:0.569140295725;SOX17:0.560100811377;TFAP2B:0.559715414604;NKX3-1:0.554375484997;PATZ1:0.552729287914;PPARG:0.533536915512;ZNF238:0.528682234476;MEF2{A,B,C,D}:0.505184252756;AR:0.484352550483;EVI1:0.464364310587;RXR{A,B,G}:0.438641481018;NR5A1,2:0.435169756742;TFCP2:0.429799040433;ESR1:0.409578796733;ADNP_IRX_SIX_ZHX:0.398055806056;TOPORS:0.396094384142;MTE{core}:0.391540550025;HIC1:0.387090726768;POU3F1..4:0.382806422787;bHLH_family:0.381967459361;NKX2-1,4:0.374123872913;HES1:0.370162142645;ZNF423:0.354297919028;GFI1:0.345677273492;NR6A1:0.331388139249;ESRRA:0.319676083461;NANOG{mouse}:0.308221537639;NFIX:0.305866275174;GATA6:0.298843928497;STAT2,4,6:0.276232784459;MAFB:0.275200363326;EGR1..3:0.26848435053;REST:0.254470196212;NFE2L2:0.254015250197;ZNF384:0.222254434367;GATA4:0.216349650598;NFATC1..3:0.214971367897;SP1:0.202512811551;SPZ1:0.188254908943;TFAP2{A,C}:0.166264623586;LEF1_TCF7_TCF7L1,2:0.152033116034;HLF:0.110214596062;HOXA9_MEIS1:0.107103696645;SOX2:0.104299485816;RREB1:0.0847933618451;BACH2:0.0561670485502;PRDM1:0.0525325661929;HSF1,2:0.0337912150219;PAX8:0.0206057895084;FOS_FOS{B,L1}_JUN{B,D}:0.0190071299158;NHLH1,2:0.00593544540036;MZF1:-0.00993744796577;LMO2:-0.020086730413;ZNF143:-0.032112652036;MYFfamily:-0.0431466105905;HMGA1,2:-0.0499386420462;MTF1:-0.0628595657875;ATF6:-0.0706715856149;HNF1A:-0.0776751492289;GZF1:-0.0801542567699;POU2F1..3:-0.0983620561554;FOXL1:-0.0985689336974;PAX6:-0.110863343526;CDC5L:-0.122346357575;TFDP1:-0.127402178928;ATF2:-0.129559251795;AIRE:-0.131151354512;VSX1,2:-0.138244992343;CRX:-0.146114343565;NANOG:-0.153663332692;HNF4A_NR2F1,2:-0.160058811711;ELK1,4_GABP{A,B1}:-0.164613948396;SOX{8,9,10}:-0.168853822033;NKX2-2,8:-0.187115290797;FOSL2:-0.190718368048;TEF:-0.199712054531;EP300:-0.20451775117;E2F1..5:-0.209705022014;PAX1,9:-0.239933656135;PAX3,7:-0.247154494458;JUN:-0.247702178774;POU5F1:-0.249051887284;AHR_ARNT_ARNT2:-0.255189656529;POU1F1:-0.267285614848;HOX{A4,D4}:-0.267346799762;CEBPA,B_DDIT3:-0.274700880997;ARID5B:-0.280889594647;SNAI1..3:-0.290507460547;MYOD1:-0.299321578615;NFY{A,B,C}:-0.302416648971;PAX2:-0.32054151921;MYB:-0.333061800453;NRF1:-0.335376991057;PBX1:-0.358560879039;RUNX1..3:-0.377299250246;RFX1:-0.37980207342;NFE2:-0.383244007206;NFKB1_REL_RELA:-0.389929198332;ZFP161:-0.408541150193;YY1:-0.418719785017;SOX5:-0.422075451201;PRRX1,2:-0.429404992978;NKX6-1,2:-0.464470667891;SREBF1,2:-0.472907661767;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.479506070391;NFIL3:-0.489482768935;MED-1{core}:-0.507336459245;ALX1:-0.512252809208;PDX1:-0.524288128392;ZEB1:-0.529479540509;FOXA2:-0.540106776097;ELF1,2,4:-0.546224295096;TGIF1:-0.550961820815;ETS1,2:-0.55564749741;IRF1,2:-0.564675255004;NR1H4:-0.609079599559;CUX2:-0.61291424777;TLX2:-0.617329554968;NKX2-3_NKX2-5:-0.625752378756;HBP1_HMGB_SSRP1_UBTF:-0.653942843861;SPIB:-0.656254693953;ATF4:-0.656520947208;OCT4_SOX2{dimer}:-0.658745164708;BPTF:-0.675630537039;RORA:-0.682007791759;SPI1:-0.695436917266;DBP:-0.720512794444;CDX1,2,4:-0.731512869526;ATF5_CREB3:-0.735960261604;FOX{D1,D2}:-0.768454383396;BREu{core}:-0.77439329525;FOX{F1,F2,J1}:-0.821648156933;POU6F1:-0.826489139515;IRF7:-0.855928003798;FOXQ1:-0.876556869786;FOXP3:-0.903804096167;FOXO1,3,4:-0.943340089679;FOX{I1,J2}:-0.979298326931;IKZF2:-0.986188668853;CREB1:-1.01659363897;HOX{A6,A7,B6,B7}:-1.06916758417;STAT1,3:-1.07174538847;DMAP1_NCOR{1,2}_SMARC:-1.16169862589;FOXP1:-1.19157882274;T:-1.22563209356;PAX4:-1.24731738362;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.29517131638;RBPJ:-1.3734445448;PITX1..3:-1.3915867758;ZBTB16:-1.42728170112;FOXN1:-1.47042411851;RFX2..5_RFXANK_RFXAP:-1.59530913331;FOXD3:-1.69593013024 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11268-116G8;search_select_hide=table117:FF:11268-116G8 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Fibroblast - Cardiac, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12498 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12498
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12498
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.586 |
| 10 | 10 | 0.0411 |
| 100 | 100 | 0.861 |
| 101 | 101 | 0.077 |
| 102 | 102 | 0.703 |
| 103 | 103 | 0.448 |
| 104 | 104 | 0.642 |
| 105 | 105 | 0.735 |
| 106 | 106 | 0.318 |
| 107 | 107 | 0.0356 |
| 108 | 108 | 0.224 |
| 109 | 109 | 0.675 |
| 11 | 11 | 0.595 |
| 110 | 110 | 0.672 |
| 111 | 111 | 0.148 |
| 112 | 112 | 0.681 |
| 113 | 113 | 0.271 |
| 114 | 114 | 0.948 |
| 115 | 115 | 0.0218 |
| 116 | 116 | 0.0413 |
| 117 | 117 | 0.12 |
| 118 | 118 | 0.881 |
| 119 | 119 | 0.801 |
| 12 | 12 | 0.73 |
| 120 | 120 | 0.372 |
| 121 | 121 | 0.951 |
| 122 | 122 | 0.654 |
| 123 | 123 | 6.13859e-4 |
| 124 | 124 | 0.242 |
| 125 | 125 | 0.317 |
| 126 | 126 | 0.446 |
| 127 | 127 | 0.938 |
| 128 | 128 | 0.271 |
| 129 | 129 | 0.317 |
| 13 | 13 | 0.771 |
| 130 | 130 | 0.678 |
| 131 | 131 | 0.249 |
| 132 | 132 | 0.385 |
| 133 | 133 | 0.609 |
| 134 | 134 | 0.665 |
| 135 | 135 | 0.474 |
| 136 | 136 | 0.892 |
| 137 | 137 | 0.00978 |
| 138 | 138 | 0.167 |
| 139 | 139 | 0.542 |
| 14 | 14 | 0.356 |
| 140 | 140 | 0.989 |
| 141 | 141 | 0.563 |
| 142 | 142 | 0.707 |
| 143 | 143 | 0.552 |
| 144 | 144 | 0.912 |
| 145 | 145 | 0.533 |
| 146 | 146 | 0.341 |
| 147 | 147 | 0.211 |
| 148 | 148 | 0.0804 |
| 149 | 149 | 0.0191 |
| 15 | 15 | 0.735 |
| 150 | 150 | 0.248 |
| 151 | 151 | 0.973 |
| 152 | 152 | 0.0655 |
| 153 | 153 | 0.643 |
| 154 | 154 | 0.207 |
| 155 | 155 | 0.162 |
| 156 | 156 | 0.35 |
| 157 | 157 | 0.135 |
| 158 | 158 | 0.0117 |
| 159 | 159 | 0.847 |
| 16 | 16 | 0.0711 |
| 160 | 160 | 0.0316 |
| 161 | 161 | 0.425 |
| 162 | 162 | 0.787 |
| 163 | 163 | 0.989 |
| 164 | 164 | 0.565 |
| 165 | 165 | 0.353 |
| 166 | 166 | 0.158 |
| 167 | 167 | 0.371 |
| 168 | 168 | 0.985 |
| 169 | 169 | 0.0631 |
| 17 | 17 | 0.544 |
| 18 | 18 | 0.55 |
| 19 | 19 | 0.0298 |
| 2 | 2 | 0.158 |
| 20 | 20 | 0.301 |
| 21 | 21 | 0.777 |
| 22 | 22 | 0.275 |
| 23 | 23 | 0.434 |
| 24 | 24 | 0.734 |
| 25 | 25 | 0.317 |
| 26 | 26 | 0.593 |
| 27 | 27 | 0.501 |
| 28 | 28 | 0.0959 |
| 29 | 29 | 0.891 |
| 3 | 3 | 0.652 |
| 30 | 30 | 0.127 |
| 31 | 31 | 0.231 |
| 32 | 32 | 1.33199e-11 |
| 33 | 33 | 0.604 |
| 34 | 34 | 0.379 |
| 35 | 35 | 0.537 |
| 36 | 36 | 0.0576 |
| 37 | 37 | 0.996 |
| 38 | 38 | 0.705 |
| 39 | 39 | 0.251 |
| 4 | 4 | 0.843 |
| 40 | 40 | 0.923 |
| 41 | 41 | 0.8 |
| 42 | 42 | 0.479 |
| 43 | 43 | 0.922 |
| 44 | 44 | 0.229 |
| 45 | 45 | 0.516 |
| 46 | 46 | 0.718 |
| 47 | 47 | 0.906 |
| 48 | 48 | 0.791 |
| 49 | 49 | 0.721 |
| 5 | 5 | 0.75 |
| 50 | 50 | 0.901 |
| 51 | 51 | 0.893 |
| 52 | 52 | 0.402 |
| 53 | 53 | 0.138 |
| 54 | 54 | 0.81 |
| 55 | 55 | 0.829 |
| 56 | 56 | 0.983 |
| 57 | 57 | 0.954 |
| 58 | 58 | 0.157 |
| 59 | 59 | 0.0833 |
| 6 | 6 | 0.599 |
| 60 | 60 | 0.989 |
| 61 | 61 | 0.639 |
| 62 | 62 | 0.442 |
| 63 | 63 | 0.594 |
| 64 | 64 | 0.995 |
| 65 | 65 | 0.471 |
| 66 | 66 | 0.663 |
| 67 | 67 | 0.619 |
| 68 | 68 | 0.716 |
| 69 | 69 | 0.12 |
| 7 | 7 | 0.515 |
| 70 | 70 | 0.721 |
| 71 | 71 | 0.651 |
| 72 | 72 | 0.891 |
| 73 | 73 | 0.0437 |
| 74 | 74 | 0.662 |
| 75 | 75 | 0.579 |
| 76 | 76 | 0.152 |
| 77 | 77 | 0.0123 |
| 78 | 78 | 0.374 |
| 79 | 79 | 0.0105 |
| 8 | 8 | 0.184 |
| 80 | 80 | 0.584 |
| 81 | 81 | 0.799 |
| 82 | 82 | 0.375 |
| 83 | 83 | 0.598 |
| 84 | 84 | 0.586 |
| 85 | 85 | 0.271 |
| 86 | 86 | 0.791 |
| 87 | 87 | 0.109 |
| 88 | 88 | 0.324 |
| 89 | 89 | 0.0547 |
| 9 | 9 | 0.645 |
| 90 | 90 | 0.00869 |
| 91 | 91 | 0.642 |
| 92 | 92 | 0.976 |
| 93 | 93 | 0.511 |
| 94 | 94 | 0.923 |
| 95 | 95 | 0.896 |
| 96 | 96 | 0.706 |
| 97 | 97 | 0.714 |
| 98 | 98 | 0.774 |
| 99 | 99 | 0.00748 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12498
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
