FF:11350-117G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004884 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004884 | ||
|accession_numbers=CAGE;DRX008328;DRR009200;DRZ000625;DRZ002010;DRZ011975;DRZ013360 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037215;DRR041581;DRZ007223 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000088 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11350-117G9 | |id=FF:11350-117G9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000088 | ||
|is_obsolete= | |||
|library_id=CNhs11382 | |||
|library_id_phase_based=2:CNhs11382 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11350 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.AGTTCC.11350 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11350 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.AGTTCC.11350 | |||
|name=Mammary Epithelial Cell, donor2 | |name=Mammary Epithelial Cell, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11382,LSID771,release012,COMPLETED | |profile_hcage=CNhs11382,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0495149489561109,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0.110803081130275,0,0.199005448464995,0,0,-0.153323010348428,0,0,0,0.50642464247824,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.199005448464995,0,-0.18188694596813,0,0,0,0.272283065509648,0,0,0,0,0.0311865194523032,0,0,0,0,0,-0.0270023585066044,0,-0.0969923612426051,0,0,0.0134594539171782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132409952430997,0,0,0,0.05235625431845,0.0678991190305205,0.0554015405651375,0.110803081130275,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0.0554015405651375,0,0,0,0,0,0,0.0397679388323632,0,0,0,-0.188652303681418,-0.44213410267202,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA830-R10a | |rna_catalog_number=CA830-R10a | ||
| Line 56: | Line 81: | ||
|rna_tube_id=117G9 | |rna_tube_id=117G9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.AGTTCC | |||
|sample_age=28 | |sample_age=28 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity=Persian | |sample_ethnicity=Persian | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.03813036169434e-260!GO:0043226;organelle;7.8170618722687e-205!GO:0043229;intracellular organelle;3.58201834071204e-204!GO:0005737;cytoplasm;1.21091902551288e-194!GO:0043231;intracellular membrane-bound organelle;6.2103650256964e-194!GO:0043227;membrane-bound organelle;9.91568125352764e-194!GO:0044422;organelle part;3.27505597201161e-161!GO:0044446;intracellular organelle part;7.83967249740621e-160!GO:0044444;cytoplasmic part;2.61984723854036e-127!GO:0032991;macromolecular complex;2.28621991657377e-115!GO:0030529;ribonucleoprotein complex;4.60008041521841e-93!GO:0044238;primary metabolic process;2.55604806213565e-91!GO:0044237;cellular metabolic process;1.58271102410001e-90!GO:0005634;nucleus;9.25906929475762e-84!GO:0043170;macromolecule metabolic process;1.68106622663949e-83!GO:0044428;nuclear part;7.94532663093602e-79!GO:0005515;protein binding;1.52795178510616e-78!GO:0043233;organelle lumen;5.68357495964992e-77!GO:0031974;membrane-enclosed lumen;5.68357495964992e-77!GO:0005739;mitochondrion;8.71812566535437e-72!GO:0003723;RNA binding;2.57816708202638e-70!GO:0043234;protein complex;8.22143423816406e-60!GO:0005840;ribosome;2.04307588375382e-54!GO:0006412;translation;2.11277849000671e-54!GO:0006396;RNA processing;2.57889660159546e-54!GO:0019538;protein metabolic process;3.44468080752924e-53!GO:0016043;cellular component organization and biogenesis;4.45819561511942e-53!GO:0043228;non-membrane-bound organelle;4.17211271713696e-49!GO:0043232;intracellular non-membrane-bound organelle;4.17211271713696e-49!GO:0031090;organelle membrane;1.17444293890539e-48!GO:0003735;structural constituent of ribosome;9.25223305100997e-48!GO:0031981;nuclear lumen;1.79586530295823e-47!GO:0044429;mitochondrial part;1.79586530295823e-47!GO:0043283;biopolymer metabolic process;6.72186348704545e-46!GO:0009058;biosynthetic process;7.42133968030454e-46!GO:0044267;cellular protein metabolic process;7.59674319124236e-46!GO:0044260;cellular macromolecule metabolic process;1.05136049664584e-45!GO:0044249;cellular biosynthetic process;1.51554121960008e-44!GO:0005829;cytosol;4.7591610466288e-44!GO:0033036;macromolecule localization;2.96313542085749e-43!GO:0015031;protein transport;6.90334147869074e-43!GO:0031967;organelle envelope;9.22881144220053e-43!GO:0031975;envelope;2.32864653835334e-42!GO:0033279;ribosomal subunit;7.17555064490134e-41!GO:0045184;establishment of protein localization;5.00254422354378e-40!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.13271283810708e-40!GO:0008104;protein localization;1.49194504158918e-39!GO:0009059;macromolecule biosynthetic process;1.49316285749767e-39!GO:0065003;macromolecular complex assembly;1.60968617785597e-39!GO:0016071;mRNA metabolic process;1.61328564889296e-39!GO:0006996;organelle organization and biogenesis;4.93506844017352e-39!GO:0010467;gene expression;1.26431326675116e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.10426050073397e-37!GO:0046907;intracellular transport;6.66694706883172e-37!GO:0008380;RNA splicing;8.66284034812974e-37!GO:0022607;cellular component assembly;2.32921203946293e-35!GO:0006259;DNA metabolic process;4.84695103022709e-35!GO:0007049;cell cycle;4.86853893703114e-35!GO:0006397;mRNA processing;1.76998637298999e-34!GO:0006886;intracellular protein transport;1.37333032170006e-30!GO:0005740;mitochondrial envelope;9.19302488560114e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.13283272824137e-29!GO:0031966;mitochondrial membrane;1.3003197983828e-27!GO:0005681;spliceosome;2.99063651143433e-27!GO:0022402;cell cycle process;3.13161109242895e-27!GO:0005654;nucleoplasm;1.24286717283316e-26!GO:0000166;nucleotide binding;3.63264493321111e-26!GO:0019866;organelle inner membrane;5.35553270692373e-26!GO:0000278;mitotic cell cycle;9.59865881093976e-26!GO:0044445;cytosolic part;2.07757024117736e-25!GO:0051649;establishment of cellular localization;9.52580413703062e-25!GO:0051641;cellular localization;1.58319708995093e-24!GO:0005743;mitochondrial inner membrane;3.34969853870023e-24!GO:0005730;nucleolus;1.05093726691012e-23!GO:0006974;response to DNA damage stimulus;4.44161613641454e-23!GO:0016462;pyrophosphatase activity;3.11736366861134e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.73875041093382e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.21385710365764e-22!GO:0017111;nucleoside-triphosphatase activity;1.88723855204061e-21!GO:0031980;mitochondrial lumen;1.98744149515224e-21!GO:0005759;mitochondrial matrix;1.98744149515224e-21!GO:0015934;large ribosomal subunit;2.44415647506319e-21!GO:0000087;M phase of mitotic cell cycle;5.03779039099898e-21!GO:0006119;oxidative phosphorylation;5.5865359498788e-21!GO:0016874;ligase activity;1.01551904124474e-20!GO:0044451;nucleoplasm part;1.04169678351036e-20!GO:0007067;mitosis;1.20693874433942e-20!GO:0003676;nucleic acid binding;1.25154473648164e-20!GO:0015935;small ribosomal subunit;1.85016428495457e-20!GO:0012505;endomembrane system;1.02112757591262e-19!GO:0044455;mitochondrial membrane part;1.03532942204783e-19!GO:0022403;cell cycle phase;1.75543940804916e-19!GO:0006281;DNA repair;2.7151146087331e-19!GO:0022618;protein-RNA complex assembly;4.17867008476729e-19!GO:0006457;protein folding;4.68635500892508e-19!GO:0017076;purine nucleotide binding;9.4839600062618e-19!GO:0042254;ribosome biogenesis and assembly;9.4839600062618e-19!GO:0051301;cell division;9.96193215161877e-19!GO:0005694;chromosome;1.18523580426548e-18!GO:0032553;ribonucleotide binding;1.62398303901674e-18!GO:0032555;purine ribonucleotide binding;1.62398303901674e-18!GO:0044427;chromosomal part;1.69032269722412e-17!GO:0000279;M phase;2.42233410177432e-17!GO:0006512;ubiquitin cycle;2.4371214754883e-17!GO:0006605;protein targeting;4.93594484212493e-17!GO:0005761;mitochondrial ribosome;1.18836328989741e-16!GO:0000313;organellar ribosome;1.18836328989741e-16!GO:0044265;cellular macromolecule catabolic process;1.73871334841504e-16!GO:0048770;pigment granule;2.16740302896907e-16!GO:0042470;melanosome;2.16740302896907e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.87375602810102e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;5.27554466893866e-16!GO:0009719;response to endogenous stimulus;6.3791757784442e-16!GO:0008135;translation factor activity, nucleic acid binding;6.38097592877016e-16!GO:0019941;modification-dependent protein catabolic process;7.56733843751541e-16!GO:0043632;modification-dependent macromolecule catabolic process;7.56733843751541e-16!GO:0043285;biopolymer catabolic process;8.99821111057255e-16!GO:0051186;cofactor metabolic process;9.88355852073894e-16!GO:0016070;RNA metabolic process;1.03007473647605e-15!GO:0006260;DNA replication;1.15038494718624e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.1517842097012e-15!GO:0012501;programmed cell death;1.20040697458227e-15!GO:0044257;cellular protein catabolic process;1.39253236145149e-15!GO:0000074;regulation of progression through cell cycle;1.76053744251291e-15!GO:0051726;regulation of cell cycle;2.03985069347165e-15!GO:0005524;ATP binding;2.3242069195221e-15!GO:0006915;apoptosis;2.70643051214158e-15!GO:0005746;mitochondrial respiratory chain;4.45457278566768e-15!GO:0005783;endoplasmic reticulum;4.7241828138063e-15!GO:0030554;adenyl nucleotide binding;5.08429801742587e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.29200121227677e-15!GO:0032559;adenyl ribonucleotide binding;6.06015114116566e-15!GO:0051276;chromosome organization and biogenesis;1.4212474051569e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.61731421415966e-14!GO:0009057;macromolecule catabolic process;2.01008459039347e-14!GO:0008219;cell death;2.92607436547843e-14!GO:0016265;death;2.92607436547843e-14!GO:0008134;transcription factor binding;3.1686641862076e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.85211051377653e-14!GO:0043412;biopolymer modification;6.69014900065647e-14!GO:0044248;cellular catabolic process;8.37014725848493e-14!GO:0005635;nuclear envelope;1.32352016508553e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.41408932468108e-13!GO:0000375;RNA splicing, via transesterification reactions;1.41408932468108e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.41408932468108e-13!GO:0030163;protein catabolic process;1.63608830042945e-13!GO:0044432;endoplasmic reticulum part;1.9701808532718e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.03460989544492e-13!GO:0003954;NADH dehydrogenase activity;2.03460989544492e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.03460989544492e-13!GO:0048193;Golgi vesicle transport;2.2817446781386e-13!GO:0005794;Golgi apparatus;3.26171395745724e-13!GO:0006461;protein complex assembly;4.10805294939576e-13!GO:0051082;unfolded protein binding;4.78178603942024e-13!GO:0006732;coenzyme metabolic process;5.63114463417921e-13!GO:0006399;tRNA metabolic process;7.18362171232971e-13!GO:0044453;nuclear membrane part;7.44106773841497e-13!GO:0003743;translation initiation factor activity;8.56785833694522e-13!GO:0006413;translational initiation;1.57565936590084e-12!GO:0031965;nuclear membrane;1.57565936590084e-12!GO:0006364;rRNA processing;1.87090314956266e-12!GO:0016072;rRNA metabolic process;2.44701817902218e-12!GO:0006464;protein modification process;3.22641982775868e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.46703616401124e-12!GO:0042773;ATP synthesis coupled electron transport;3.46703616401124e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.08899602119644e-11!GO:0045271;respiratory chain complex I;1.08899602119644e-11!GO:0005747;mitochondrial respiratory chain complex I;1.08899602119644e-11!GO:0006913;nucleocytoplasmic transport;1.09467159817931e-11!GO:0043687;post-translational protein modification;1.45066462658655e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.77440077086403e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.0228625298499e-11!GO:0051169;nuclear transport;2.67677887613161e-11!GO:0016887;ATPase activity;2.72410627493209e-11!GO:0006446;regulation of translational initiation;3.07826193469698e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;4.0680973518047e-11!GO:0005643;nuclear pore;5.93857430337895e-11!GO:0016604;nuclear body;5.98722780552858e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.88072618060636e-11!GO:0042623;ATPase activity, coupled;1.00823338345783e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.05328168385304e-10!GO:0006323;DNA packaging;1.30838916445313e-10!GO:0008639;small protein conjugating enzyme activity;1.43841780886525e-10!GO:0009259;ribonucleotide metabolic process;1.49467698494902e-10!GO:0005789;endoplasmic reticulum membrane;2.69822534639629e-10!GO:0004842;ubiquitin-protein ligase activity;3.23602715062646e-10!GO:0008565;protein transporter activity;3.49095532026733e-10!GO:0015630;microtubule cytoskeleton;3.98260180795813e-10!GO:0006163;purine nucleotide metabolic process;4.31151663331251e-10!GO:0065004;protein-DNA complex assembly;4.45319849462559e-10!GO:0016192;vesicle-mediated transport;5.88942959503021e-10!GO:0009055;electron carrier activity;8.45613001286279e-10!GO:0043067;regulation of programmed cell death;1.15447681410172e-09!GO:0004386;helicase activity;1.15704160000699e-09!GO:0017038;protein import;1.1682688716916e-09!GO:0019787;small conjugating protein ligase activity;1.17227132413181e-09!GO:0000785;chromatin;1.20007796435614e-09!GO:0042981;regulation of apoptosis;1.31272472097231e-09!GO:0006403;RNA localization;1.54353229675339e-09!GO:0009150;purine ribonucleotide metabolic process;1.5777424321242e-09!GO:0050657;nucleic acid transport;1.69306427331726e-09!GO:0051236;establishment of RNA localization;1.69306427331726e-09!GO:0050658;RNA transport;1.69306427331726e-09!GO:0009260;ribonucleotide biosynthetic process;1.84360586754856e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.24093199574023e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.24093199574023e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.24093199574023e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.24093199574023e-09!GO:0006164;purine nucleotide biosynthetic process;2.54087851635738e-09!GO:0065002;intracellular protein transport across a membrane;2.54087851635738e-09!GO:0048523;negative regulation of cellular process;2.59009760041141e-09!GO:0043038;amino acid activation;2.89684606301931e-09!GO:0006418;tRNA aminoacylation for protein translation;2.89684606301931e-09!GO:0043039;tRNA aminoacylation;2.89684606301931e-09!GO:0046930;pore complex;3.24789066083945e-09!GO:0016607;nuclear speck;4.54449282744267e-09!GO:0007005;mitochondrion organization and biogenesis;4.80327938810255e-09!GO:0009141;nucleoside triphosphate metabolic process;5.53917591683454e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.01247596946791e-09!GO:0051188;cofactor biosynthetic process;6.18322262594062e-09!GO:0016881;acid-amino acid ligase activity;6.1863821974677e-09!GO:0009199;ribonucleoside triphosphate metabolic process;6.86559291035986e-09!GO:0006333;chromatin assembly or disassembly;7.42670423910467e-09!GO:0009152;purine ribonucleotide biosynthetic process;9.09081577196108e-09!GO:0003712;transcription cofactor activity;1.14653939508839e-08!GO:0005793;ER-Golgi intermediate compartment;1.1756881455074e-08!GO:0005819;spindle;1.43078042274682e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.46391647541466e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.46391647541466e-08!GO:0009056;catabolic process;1.5077362311066e-08!GO:0008026;ATP-dependent helicase activity;1.67094708131923e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.98482043252605e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.98482043252605e-08!GO:0006366;transcription from RNA polymerase II promoter;2.33435037940184e-08!GO:0006334;nucleosome assembly;2.35710043333029e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.64336422433288e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.92877395576539e-08!GO:0051246;regulation of protein metabolic process;3.10023115527195e-08!GO:0003924;GTPase activity;3.41313762826366e-08!GO:0015986;ATP synthesis coupled proton transport;4.10166561530901e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.10166561530901e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.25624217106447e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.25624217106447e-08!GO:0016779;nucleotidyltransferase activity;4.92415689784747e-08!GO:0003697;single-stranded DNA binding;5.61223091733967e-08!GO:0009060;aerobic respiration;6.40224576020999e-08!GO:0032446;protein modification by small protein conjugation;6.60145443063446e-08!GO:0048519;negative regulation of biological process;6.80777563214086e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.20005538538685e-08!GO:0048475;coated membrane;7.26333663760253e-08!GO:0030117;membrane coat;7.26333663760253e-08!GO:0031497;chromatin assembly;7.5299703501551e-08!GO:0043566;structure-specific DNA binding;7.5299703501551e-08!GO:0016740;transferase activity;7.79725929526879e-08!GO:0016567;protein ubiquitination;8.44318817549767e-08!GO:0005768;endosome;9.55998336162912e-08!GO:0030120;vesicle coat;1.08555372092385e-07!GO:0030662;coated vesicle membrane;1.08555372092385e-07!GO:0051028;mRNA transport;1.12527702793038e-07!GO:0006752;group transfer coenzyme metabolic process;1.12527702793038e-07!GO:0043069;negative regulation of programmed cell death;1.29768746646524e-07!GO:0005813;centrosome;1.47708228951945e-07!GO:0046034;ATP metabolic process;1.94155086352007e-07!GO:0019829;cation-transporting ATPase activity;2.61897993246257e-07!GO:0043623;cellular protein complex assembly;2.6375105956444e-07!GO:0016787;hydrolase activity;2.74996441073475e-07!GO:0009108;coenzyme biosynthetic process;2.74996441073475e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.14520272857796e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.15657441557293e-07!GO:0000775;chromosome, pericentric region;3.39701387334282e-07!GO:0043066;negative regulation of apoptosis;3.40632896271903e-07!GO:0006916;anti-apoptosis;3.74814292445088e-07!GO:0009117;nucleotide metabolic process;4.24292746136245e-07!GO:0045333;cellular respiration;4.50956427213964e-07!GO:0006754;ATP biosynthetic process;4.95224380826696e-07!GO:0006753;nucleoside phosphate metabolic process;4.95224380826696e-07!GO:0005815;microtubule organizing center;6.13385706652683e-07!GO:0006099;tricarboxylic acid cycle;6.27641367189898e-07!GO:0046356;acetyl-CoA catabolic process;6.27641367189898e-07!GO:0050794;regulation of cellular process;7.61805888269905e-07!GO:0006261;DNA-dependent DNA replication;1.1613559555022e-06!GO:0051170;nuclear import;1.24125749249721e-06!GO:0005525;GTP binding;1.42919404965787e-06!GO:0006084;acetyl-CoA metabolic process;1.44961643805709e-06!GO:0009109;coenzyme catabolic process;1.53731939621681e-06!GO:0007051;spindle organization and biogenesis;1.66560164371438e-06!GO:0031252;leading edge;1.71280797371682e-06!GO:0045259;proton-transporting ATP synthase complex;1.79818967955239e-06!GO:0042802;identical protein binding;2.17808071438509e-06!GO:0006606;protein import into nucleus;2.43547778131445e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.43547778131445e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.59484633001534e-06!GO:0044431;Golgi apparatus part;2.76462174245639e-06!GO:0045786;negative regulation of progression through cell cycle;3.03156577338943e-06!GO:0051187;cofactor catabolic process;3.3820895685733e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.51840219080565e-06!GO:0000245;spliceosome assembly;3.64768750030936e-06!GO:0016491;oxidoreductase activity;3.66534274935361e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.80557175123116e-06!GO:0000075;cell cycle checkpoint;4.78043136735753e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.18725423365274e-06!GO:0006793;phosphorus metabolic process;5.28500105704362e-06!GO:0006796;phosphate metabolic process;5.28500105704362e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.51045393571245e-06!GO:0006613;cotranslational protein targeting to membrane;6.25810485543598e-06!GO:0008654;phospholipid biosynthetic process;6.51124036261884e-06!GO:0007088;regulation of mitosis;6.51521374927432e-06!GO:0005762;mitochondrial large ribosomal subunit;7.55098066368524e-06!GO:0000315;organellar large ribosomal subunit;7.55098066368524e-06!GO:0051329;interphase of mitotic cell cycle;9.18034411220392e-06!GO:0005667;transcription factor complex;9.23352626612814e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.00470256841008e-05!GO:0016568;chromatin modification;1.06572438436564e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;1.46294098096879e-05!GO:0016853;isomerase activity;1.49808526788899e-05!GO:0044440;endosomal part;1.84444902137061e-05!GO:0010008;endosome membrane;1.84444902137061e-05!GO:0003724;RNA helicase activity;2.06492245612136e-05!GO:0051325;interphase;2.07198370001413e-05!GO:0003899;DNA-directed RNA polymerase activity;2.12842868855708e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.15502172435863e-05!GO:0004298;threonine endopeptidase activity;2.28682089701816e-05!GO:0000314;organellar small ribosomal subunit;2.48680255996248e-05!GO:0005763;mitochondrial small ribosomal subunit;2.48680255996248e-05!GO:0032561;guanyl ribonucleotide binding;2.50501372284853e-05!GO:0019001;guanyl nucleotide binding;2.50501372284853e-05!GO:0048522;positive regulation of cellular process;2.6117009115157e-05!GO:0044452;nucleolar part;3.41799977210715e-05!GO:0043021;ribonucleoprotein binding;3.47827600585799e-05!GO:0031324;negative regulation of cellular metabolic process;3.61347488392012e-05!GO:0019867;outer membrane;3.70371963907674e-05!GO:0065009;regulation of a molecular function;4.19118247554079e-05!GO:0031968;organelle outer membrane;4.19539327307461e-05!GO:0007010;cytoskeleton organization and biogenesis;4.72593325064454e-05!GO:0005798;Golgi-associated vesicle;4.78913913196485e-05!GO:0008033;tRNA processing;5.98886243503756e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.01315043467393e-05!GO:0051427;hormone receptor binding;6.19510736001535e-05!GO:0000786;nucleosome;6.73337072773027e-05!GO:0000139;Golgi membrane;6.86785320569917e-05!GO:0006839;mitochondrial transport;6.89646720717523e-05!GO:0048471;perinuclear region of cytoplasm;7.60493187345166e-05!GO:0016859;cis-trans isomerase activity;8.26808213324531e-05!GO:0000151;ubiquitin ligase complex;8.52374281396803e-05!GO:0005657;replication fork;9.73220554099821e-05!GO:0045454;cell redox homeostasis;0.000105588492733336!GO:0006612;protein targeting to membrane;0.000110793985916211!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000112682751368416!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000117142589023495!GO:0016363;nuclear matrix;0.000117287102993614!GO:0003684;damaged DNA binding;0.000117297836164651!GO:0016310;phosphorylation;0.000117512625866321!GO:0051168;nuclear export;0.0001192262336685!GO:0003714;transcription corepressor activity;0.000130249590342375!GO:0035257;nuclear hormone receptor binding;0.000130417244052!GO:0051252;regulation of RNA metabolic process;0.000130497326790405!GO:0005741;mitochondrial outer membrane;0.000132308085046043!GO:0003690;double-stranded DNA binding;0.000134883083607887!GO:0000776;kinetochore;0.000135510367213648!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000141559082273627!GO:0005769;early endosome;0.000145644155924972!GO:0008094;DNA-dependent ATPase activity;0.000152573529376702!GO:0009892;negative regulation of metabolic process;0.000155602174170898!GO:0006950;response to stress;0.000156277260877189!GO:0005770;late endosome;0.000162136099812892!GO:0050662;coenzyme binding;0.000162783725742617!GO:0016564;transcription repressor activity;0.000167380280341182!GO:0030867;rough endoplasmic reticulum membrane;0.000185275711941828!GO:0006626;protein targeting to mitochondrion;0.000220171287959225!GO:0006302;double-strand break repair;0.000225587027073677!GO:0019899;enzyme binding;0.000276181468400146!GO:0016563;transcription activator activity;0.00027981091934499!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000297083750985705!GO:0005788;endoplasmic reticulum lumen;0.000308584164138356!GO:0046474;glycerophospholipid biosynthetic process;0.00032712357934227!GO:0001726;ruffle;0.00033804245911612!GO:0007006;mitochondrial membrane organization and biogenesis;0.000353703035172456!GO:0016126;sterol biosynthetic process;0.000384655153465759!GO:0003713;transcription coactivator activity;0.000387622456215683!GO:0005773;vacuole;0.000411028069278073!GO:0050789;regulation of biological process;0.000420409068911232!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000440361959916983!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000454489189540028!GO:0043681;protein import into mitochondrion;0.000455179234742673!GO:0008168;methyltransferase activity;0.000462570379652895!GO:0048468;cell development;0.000475334520406324!GO:0009967;positive regulation of signal transduction;0.000489760553273089!GO:0015980;energy derivation by oxidation of organic compounds;0.000499249536247715!GO:0030118;clathrin coat;0.000505807342864097!GO:0007059;chromosome segregation;0.000510448164459298!GO:0008610;lipid biosynthetic process;0.000533224657453652!GO:0016741;transferase activity, transferring one-carbon groups;0.000542233618610563!GO:0016023;cytoplasmic membrane-bound vesicle;0.000550834687004329!GO:0031988;membrane-bound vesicle;0.000563573896622499!GO:0008186;RNA-dependent ATPase activity;0.000576080920820665!GO:0000059;protein import into nucleus, docking;0.000587689998356164!GO:0005874;microtubule;0.000587873444479223!GO:0005885;Arp2/3 protein complex;0.000625940016297925!GO:0007052;mitotic spindle organization and biogenesis;0.000631939653360933!GO:0006091;generation of precursor metabolites and energy;0.000633401548648228!GO:0051052;regulation of DNA metabolic process;0.000635913693023121!GO:0046489;phosphoinositide biosynthetic process;0.000648553675618982!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000652101691254285!GO:0006383;transcription from RNA polymerase III promoter;0.000658654836639261!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00068051429129216!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00073823983519106!GO:0009116;nucleoside metabolic process;0.000739341179961184!GO:0008250;oligosaccharyl transferase complex;0.000750549659262899!GO:0003729;mRNA binding;0.000762620611999794!GO:0030036;actin cytoskeleton organization and biogenesis;0.000773682214446924!GO:0046483;heterocycle metabolic process;0.00081117488149646!GO:0007050;cell cycle arrest;0.000842347511070451!GO:0009165;nucleotide biosynthetic process;0.000868139931775617!GO:0048037;cofactor binding;0.00087559768300332!GO:0004576;oligosaccharyl transferase activity;0.00087967299947471!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000885927166593566!GO:0016481;negative regulation of transcription;0.000921573804638535!GO:0051920;peroxiredoxin activity;0.000933257774356046!GO:0006695;cholesterol biosynthetic process;0.000933257774356046!GO:0006289;nucleotide-excision repair;0.000937534215796988!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000937534215796988!GO:0007243;protein kinase cascade;0.00094485707664987!GO:0006402;mRNA catabolic process;0.00094485707664987!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00101387221939714!GO:0005048;signal sequence binding;0.00101417520469734!GO:0005905;coated pit;0.00101975644775051!GO:0048518;positive regulation of biological process;0.00102713516805276!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00105480800227143!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00117054041884595!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00117054041884595!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00117054041884595!GO:0030119;AP-type membrane coat adaptor complex;0.0011870054174693!GO:0048500;signal recognition particle;0.00122992501329145!GO:0043488;regulation of mRNA stability;0.00123273940796096!GO:0043487;regulation of RNA stability;0.00123273940796096!GO:0009112;nucleobase metabolic process;0.00123273940796096!GO:0050790;regulation of catalytic activity;0.00123976335224259!GO:0000323;lytic vacuole;0.00130371962918346!GO:0005764;lysosome;0.00130371962918346!GO:0007093;mitotic cell cycle checkpoint;0.00132241205917073!GO:0004004;ATP-dependent RNA helicase activity;0.00138345998818597!GO:0030132;clathrin coat of coated pit;0.00141780617904115!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00142071702867567!GO:0033116;ER-Golgi intermediate compartment membrane;0.00143123743000406!GO:0031072;heat shock protein binding;0.0015230840598953!GO:0051540;metal cluster binding;0.00155188266471134!GO:0051536;iron-sulfur cluster binding;0.00155188266471134!GO:0046467;membrane lipid biosynthetic process;0.00161697453459776!GO:0019843;rRNA binding;0.00163073960696711!GO:0051338;regulation of transferase activity;0.00164322049857773!GO:0015631;tubulin binding;0.0017237130660875!GO:0005856;cytoskeleton;0.00182968867516899!GO:0006310;DNA recombination;0.00186176602437683!GO:0008312;7S RNA binding;0.00190473727708331!GO:0000049;tRNA binding;0.00194423865655555!GO:0031982;vesicle;0.00196601665732577!GO:0030658;transport vesicle membrane;0.00199780513982842!GO:0006891;intra-Golgi vesicle-mediated transport;0.00207359774422046!GO:0043065;positive regulation of apoptosis;0.00215749065752303!GO:0008632;apoptotic program;0.00216324883399834!GO:0030131;clathrin adaptor complex;0.00217139997735146!GO:0007017;microtubule-based process;0.00233828176295721!GO:0006401;RNA catabolic process;0.00258989590927601!GO:0004518;nuclease activity;0.00263824064164454!GO:0030663;COPI coated vesicle membrane;0.0026506188024852!GO:0030126;COPI vesicle coat;0.0026506188024852!GO:0031410;cytoplasmic vesicle;0.00282925998192027!GO:0016044;membrane organization and biogenesis;0.00286370998298571!GO:0051098;regulation of binding;0.00286370998298571!GO:0005876;spindle microtubule;0.00297784603660942!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00302753259549024!GO:0045047;protein targeting to ER;0.00302753259549024!GO:0043068;positive regulation of programmed cell death;0.00307373116576589!GO:0030880;RNA polymerase complex;0.00308349914559499!GO:0018196;peptidyl-asparagine modification;0.00314410845074781!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00314410845074781!GO:0003682;chromatin binding;0.00318277502328373!GO:0006650;glycerophospholipid metabolic process;0.00318770143777547!GO:0003678;DNA helicase activity;0.00326398748032591!GO:0030027;lamellipodium;0.00329169157563194!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00337943488578145!GO:0016197;endosome transport;0.00339782081353003!GO:0005684;U2-dependent spliceosome;0.00339894895952443!GO:0030031;cell projection biogenesis;0.00344651593056054!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00346143369271657!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00346143369271657!GO:0043549;regulation of kinase activity;0.00346963221592171!GO:0006414;translational elongation;0.0035186663538736!GO:0051087;chaperone binding;0.00353056422669701!GO:0019752;carboxylic acid metabolic process;0.00358032203723757!GO:0051287;NAD binding;0.00367206522891079!GO:0042770;DNA damage response, signal transduction;0.00369060423327757!GO:0016272;prefoldin complex;0.00375883334041854!GO:0006352;transcription initiation;0.00408014135264228!GO:0008139;nuclear localization sequence binding;0.00412159864824922!GO:0006082;organic acid metabolic process;0.00412159864824922!GO:0005791;rough endoplasmic reticulum;0.00432655795602329!GO:0008092;cytoskeletal protein binding;0.00433889347577918!GO:0030384;phosphoinositide metabolic process;0.00434843171964291!GO:0035258;steroid hormone receptor binding;0.00460375236265171!GO:0030029;actin filament-based process;0.00460375236265171!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00487884838272851!GO:0030137;COPI-coated vesicle;0.00505807734149191!GO:0006417;regulation of translation;0.00528935936631584!GO:0004527;exonuclease activity;0.00532337039706055!GO:0008361;regulation of cell size;0.00540227950651912!GO:0000082;G1/S transition of mitotic cell cycle;0.00543017435151274!GO:0030660;Golgi-associated vesicle membrane;0.00561138974813106!GO:0046983;protein dimerization activity;0.0056252818386887!GO:0030125;clathrin vesicle coat;0.00564111783107902!GO:0030665;clathrin coated vesicle membrane;0.00564111783107902!GO:0003711;transcription elongation regulator activity;0.00571779400032494!GO:0051789;response to protein stimulus;0.00584705303173964!GO:0006986;response to unfolded protein;0.00584705303173964!GO:0006405;RNA export from nucleus;0.006006705763418!GO:0051128;regulation of cellular component organization and biogenesis;0.00600787891198957!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00614542118927771!GO:0000428;DNA-directed RNA polymerase complex;0.00614542118927771!GO:0006144;purine base metabolic process;0.00617100258694441!GO:0006611;protein export from nucleus;0.00633286885675793!GO:0019222;regulation of metabolic process;0.00642312222668565!GO:0030521;androgen receptor signaling pathway;0.00650850938903787!GO:0043624;cellular protein complex disassembly;0.00651694169256773!GO:0000910;cytokinesis;0.00656319897692076!GO:0006275;regulation of DNA replication;0.00656319897692076!GO:0043022;ribosome binding;0.00656319897692076!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0067011285915162!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00687176671611537!GO:0015399;primary active transmembrane transporter activity;0.00687176671611537!GO:0006506;GPI anchor biosynthetic process;0.00715515076116602!GO:0015992;proton transport;0.00715988147620442!GO:0000922;spindle pole;0.00729470896234239!GO:0032984;macromolecular complex disassembly;0.00729470896234239!GO:0008180;signalosome;0.00733550063232428!GO:0016251;general RNA polymerase II transcription factor activity;0.0076156753255689!GO:0004674;protein serine/threonine kinase activity;0.00761983508447918!GO:0016049;cell growth;0.00769023937858839!GO:0006595;polyamine metabolic process;0.00784052852569778!GO:0005869;dynactin complex;0.0079546064923464!GO:0006818;hydrogen transport;0.00796339221582502!GO:0032508;DNA duplex unwinding;0.00799670346141448!GO:0032392;DNA geometric change;0.00799670346141448!GO:0030032;lamellipodium biogenesis;0.00799670346141448!GO:0017166;vinculin binding;0.00812430390149819!GO:0006284;base-excision repair;0.00815358076567354!GO:0045859;regulation of protein kinase activity;0.00815358076567354!GO:0051539;4 iron, 4 sulfur cluster binding;0.00817289202590435!GO:0008243;plasminogen activator activity;0.00830137530644273!GO:0030133;transport vesicle;0.00855155403437984!GO:0006497;protein amino acid lipidation;0.00859076162808717!GO:0008637;apoptotic mitochondrial changes;0.00860267485467822!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00860426002944886!GO:0016408;C-acyltransferase activity;0.00876764039091616!GO:0030503;regulation of cell redox homeostasis;0.00876764039091616!GO:0048487;beta-tubulin binding;0.00881017699660173!GO:0030176;integral to endoplasmic reticulum membrane;0.00891870323977605!GO:0048146;positive regulation of fibroblast proliferation;0.00891870323977605!GO:0000096;sulfur amino acid metabolic process;0.00904904883655076!GO:0006505;GPI anchor metabolic process;0.00933693851913236!GO:0000287;magnesium ion binding;0.00933693851913236!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00968785653769338!GO:0008022;protein C-terminus binding;0.00972297064583041!GO:0045941;positive regulation of transcription;0.00974653557169212!GO:0032200;telomere organization and biogenesis;0.00984522399850658!GO:0000723;telomere maintenance;0.00984522399850658!GO:0048144;fibroblast proliferation;0.00984522399850658!GO:0048145;regulation of fibroblast proliferation;0.00984522399850658!GO:0005637;nuclear inner membrane;0.00994978962167679!GO:0000339;RNA cap binding;0.00994978962167679!GO:0001558;regulation of cell growth;0.0100041733859219!GO:0045893;positive regulation of transcription, DNA-dependent;0.010181151521807!GO:0005832;chaperonin-containing T-complex;0.0103349017005446!GO:0000178;exosome (RNase complex);0.0109445931202955!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0113053149334171!GO:0008234;cysteine-type peptidase activity;0.0114317513383901!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0114971770868722!GO:0031529;ruffle organization and biogenesis;0.011590442777689!GO:0043241;protein complex disassembly;0.0118840395326446!GO:0031124;mRNA 3'-end processing;0.0122811165709852!GO:0000781;chromosome, telomeric region;0.012945264181237!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0131271032209561!GO:0051101;regulation of DNA binding;0.0132659721408485!GO:0031326;regulation of cellular biosynthetic process;0.0133980467255499!GO:0051537;2 iron, 2 sulfur cluster binding;0.0139642195180893!GO:0006354;RNA elongation;0.0140146642156768!GO:0005758;mitochondrial intermembrane space;0.0140951746963079!GO:0006220;pyrimidine nucleotide metabolic process;0.0143397127952405!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0147546761379129!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0147557292728012!GO:0046822;regulation of nucleocytoplasmic transport;0.0147796432036425!GO:0016311;dephosphorylation;0.0147970344769713!GO:0006268;DNA unwinding during replication;0.0148052478713528!GO:0046982;protein heterodimerization activity;0.0152334551238442!GO:0030134;ER to Golgi transport vesicle;0.0152334551238442!GO:0006979;response to oxidative stress;0.015372624361994!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0154536539830434!GO:0007004;telomere maintenance via telomerase;0.0156085838496352!GO:0009889;regulation of biosynthetic process;0.016033769696793!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0162021747137435!GO:0000086;G2/M transition of mitotic cell cycle;0.0162651421650277!GO:0006520;amino acid metabolic process;0.0164631760010344!GO:0022890;inorganic cation transmembrane transporter activity;0.0172189122095941!GO:0006730;one-carbon compound metabolic process;0.0174617883298992!GO:0030127;COPII vesicle coat;0.0174788855338508!GO:0012507;ER to Golgi transport vesicle membrane;0.0174788855338508!GO:0042393;histone binding;0.0175803507282286!GO:0006892;post-Golgi vesicle-mediated transport;0.0178685572666794!GO:0042158;lipoprotein biosynthetic process;0.0188152083416926!GO:0008283;cell proliferation;0.0188152083416926!GO:0030833;regulation of actin filament polymerization;0.0189182637825653!GO:0006917;induction of apoptosis;0.0190093638690309!GO:0003746;translation elongation factor activity;0.0191991644711548!GO:0005862;muscle thin filament tropomyosin;0.019545987442433!GO:0006509;membrane protein ectodomain proteolysis;0.0195563480376145!GO:0033619;membrane protein proteolysis;0.0195563480376145!GO:0005669;transcription factor TFIID complex;0.0197997278346376!GO:0000209;protein polyubiquitination;0.0207045171590263!GO:0050681;androgen receptor binding;0.0207200110968909!GO:0006007;glucose catabolic process;0.0207211364623751!GO:0016791;phosphoric monoester hydrolase activity;0.0212358741102102!GO:0008017;microtubule binding;0.0212364716872512!GO:0016584;nucleosome positioning;0.0218066151206275!GO:0009451;RNA modification;0.0220553406184882!GO:0045045;secretory pathway;0.0227422149441643!GO:0004722;protein serine/threonine phosphatase activity;0.0230100426030649!GO:0030518;steroid hormone receptor signaling pathway;0.0230100426030649!GO:0031970;organelle envelope lumen;0.0230100426030649!GO:0022411;cellular component disassembly;0.0232981595640656!GO:0016407;acetyltransferase activity;0.0232981595640656!GO:0006984;ER-nuclear signaling pathway;0.023704171919876!GO:0012502;induction of programmed cell death;0.0244122379136259!GO:0008629;induction of apoptosis by intracellular signals;0.0244122379136259!GO:0006541;glutamine metabolic process;0.024450649099643!GO:0046519;sphingoid metabolic process;0.0254381452265298!GO:0009303;rRNA transcription;0.0257560948655264!GO:0031570;DNA integrity checkpoint;0.0270143153013575!GO:0009119;ribonucleoside metabolic process;0.0276103543738156!GO:0006376;mRNA splice site selection;0.0278845298249839!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0278845298249839!GO:0007264;small GTPase mediated signal transduction;0.0282060661427294!GO:0008287;protein serine/threonine phosphatase complex;0.0283413056667589!GO:0007021;tubulin folding;0.0286795897505829!GO:0008538;proteasome activator activity;0.0287035272115043!GO:0044262;cellular carbohydrate metabolic process;0.0289419250936196!GO:0030145;manganese ion binding;0.0290859722438036!GO:0045792;negative regulation of cell size;0.029190986678512!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0293206608432996!GO:0031901;early endosome membrane;0.0293523865967765!GO:0033673;negative regulation of kinase activity;0.0293523865967765!GO:0006469;negative regulation of protein kinase activity;0.0293523865967765!GO:0004214;dipeptidyl-peptidase I activity;0.0297418034942043!GO:0000792;heterochromatin;0.0298653730151639!GO:0035035;histone acetyltransferase binding;0.0300381943044642!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0300381943044642!GO:0015002;heme-copper terminal oxidase activity;0.0300381943044642!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0300381943044642!GO:0004129;cytochrome-c oxidase activity;0.0300381943044642!GO:0043596;nuclear replication fork;0.0304893312091085!GO:0043492;ATPase activity, coupled to movement of substances;0.0310073425039783!GO:0001836;release of cytochrome c from mitochondria;0.0313376416344196!GO:0000725;recombinational repair;0.0319053135376018!GO:0000724;double-strand break repair via homologous recombination;0.0319053135376018!GO:0008652;amino acid biosynthetic process;0.0319053135376018!GO:0030308;negative regulation of cell growth;0.0319339577977978!GO:0030659;cytoplasmic vesicle membrane;0.0322156130739611!GO:0007346;regulation of progression through mitotic cell cycle;0.0325172349896761!GO:0008426;protein kinase C inhibitor activity;0.0326105613018882!GO:0031625;ubiquitin protein ligase binding;0.034184633631955!GO:0065007;biological regulation;0.0342541120326812!GO:0008601;protein phosphatase type 2A regulator activity;0.0344926227691816!GO:0031123;RNA 3'-end processing;0.0344926227691816!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0352826238107695!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0352826238107695!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0353265246541356!GO:0004003;ATP-dependent DNA helicase activity;0.0355318764891831!GO:0030041;actin filament polymerization;0.0355865945464337!GO:0045210;FasL biosynthetic process;0.0356290189988661!GO:0019206;nucleoside kinase activity;0.0356290189988661!GO:0031371;ubiquitin conjugating enzyme complex;0.0358710741262116!GO:0000819;sister chromatid segregation;0.036344106562362!GO:0017134;fibroblast growth factor binding;0.036448578078036!GO:0051348;negative regulation of transferase activity;0.036448578078036!GO:0022406;membrane docking;0.0369749786811973!GO:0048278;vesicle docking;0.0369749786811973!GO:0006643;membrane lipid metabolic process;0.0369749786811973!GO:0046112;nucleobase biosynthetic process;0.0369767441157468!GO:0004680;casein kinase activity;0.0370925216290327!GO:0051881;regulation of mitochondrial membrane potential;0.0373215403755006!GO:0007176;regulation of epidermal growth factor receptor activity;0.0374022558008527!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0375056451217706!GO:0006672;ceramide metabolic process;0.0381188284040497!GO:0000070;mitotic sister chromatid segregation;0.03820805522255!GO:0000228;nuclear chromosome;0.0382392996250038!GO:0006378;mRNA polyadenylation;0.0382396907760405!GO:0000159;protein phosphatase type 2A complex;0.0383112901658683!GO:0045787;positive regulation of progression through cell cycle;0.0385245904823122!GO:0043189;H4/H2A histone acetyltransferase complex;0.0388831832580847!GO:0005784;translocon complex;0.0391539540896672!GO:0043414;biopolymer methylation;0.0393018312479093!GO:0006607;NLS-bearing substrate import into nucleus;0.0394003897261514!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0395537275585524!GO:0045334;clathrin-coated endocytic vesicle;0.0396407641943432!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0396532645414508!GO:0006779;porphyrin biosynthetic process;0.0402180469888452!GO:0033014;tetrapyrrole biosynthetic process;0.0402180469888452!GO:0035267;NuA4 histone acetyltransferase complex;0.0405171738318135!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0405171738318135!GO:0006740;NADPH regeneration;0.041218585455279!GO:0006098;pentose-phosphate shunt;0.041218585455279!GO:0008097;5S rRNA binding;0.0412329959529211!GO:0006778;porphyrin metabolic process;0.0417133808690218!GO:0033013;tetrapyrrole metabolic process;0.0417133808690218!GO:0045892;negative regulation of transcription, DNA-dependent;0.0421373772919238!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0421373772919238!GO:0030508;thiol-disulfide exchange intermediate activity;0.0425014692684392!GO:0006360;transcription from RNA polymerase I promoter;0.042657881894211!GO:0030911;TPR domain binding;0.0429271658027369!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0429271658027369!GO:0005881;cytoplasmic microtubule;0.0430480411885588!GO:0004532;exoribonuclease activity;0.0430480411885588!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0430480411885588!GO:0016725;oxidoreductase activity, acting on CH or CH2 groups;0.043345229935212!GO:0008408;3'-5' exonuclease activity;0.0434224771684791!GO:0046128;purine ribonucleoside metabolic process;0.044233687261401!GO:0042278;purine nucleoside metabolic process;0.044233687261401!GO:0043284;biopolymer biosynthetic process;0.0445031350181314!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0448021013737029!GO:0008299;isoprenoid biosynthetic process;0.0449953126114354!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0465429288276668!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0474813190437738!GO:0006400;tRNA modification;0.0478688536192675!GO:0004197;cysteine-type endopeptidase activity;0.0479112550257022!GO:0008144;drug binding;0.048051116374083!GO:0043550;regulation of lipid kinase activity;0.0480529451969503!GO:0003756;protein disulfide isomerase activity;0.0480842410265091!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0480842410265091!GO:0045926;negative regulation of growth;0.0486837078082491!GO:0040008;regulation of growth;0.048744899490942!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0490336588195336!GO:0010257;NADH dehydrogenase complex assembly;0.0490336588195336!GO:0033108;mitochondrial respiratory chain complex assembly;0.0490336588195336!GO:0007034;vacuolar transport;0.0494323767151701!GO:0050839;cell adhesion molecule binding;0.0495982965047723!GO:0005663;DNA replication factor C complex;0.0496948254909192!GO:0022415;viral reproductive process;0.0499975583751397 | |||
|sample_id=11350 | |sample_id=11350 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=TP53:2.66242299691;TBX4,5:2.0235799271;VSX1,2:1.57039118423;ZEB1:1.53203121679;PPARG:1.35656265651;SNAI1..3:1.31241591214;POU1F1:1.29883764511;TEF:1.20445382798;FOXQ1:1.18607672484;FOX{I1,J2}:1.11238362964;NR3C1:1.0455301783;CDC5L:0.944877474062;PDX1:0.933441986302;NKX2-3_NKX2-5:0.918985900522;ONECUT1,2:0.918757549734;HOX{A4,D4}:0.905109301005;NKX2-2,8:0.763815744519;bHLH_family:0.73842118285;TEAD1:0.718836920951;ADNP_IRX_SIX_ZHX:0.713442853219;NKX3-2:0.712083667636;STAT5{A,B}:0.701415918627;E2F1..5:0.664452874373;FOXM1:0.6565504724;GFI1:0.570673472899;MYB:0.568765290212;NKX2-1,4:0.558460755395;HOX{A5,B5}:0.55394205832;FOS_FOS{B,L1}_JUN{B,D}:0.52440553891;TFDP1:0.523611644636;BACH2:0.469779658016;TBP:0.468172137329;EN1,2:0.429160586931;XCPE1{core}:0.426835931291;NFIL3:0.414793159298;NR5A1,2:0.413488260679;NFIX:0.407857470887;NR1H4:0.393963554862;UFEwm:0.389819543845;ELK1,4_GABP{A,B1}:0.388335458762;PAX8:0.360869747197;KLF4:0.360556345307;POU2F1..3:0.338161455799;NANOG:0.317264917404;ZNF148:0.312787042918;FOSL2:0.27866799917;ELF1,2,4:0.274350181848;MYOD1:0.268413195989;T:0.266712305569;NRF1:0.252629810355;PAX1,9:0.241797917957;ZNF143:0.239344408351;SP1:0.222852984232;SOX17:0.219076541836;CEBPA,B_DDIT3:0.205842603451;NFY{A,B,C}:0.202662877625;OCT4_SOX2{dimer}:0.153225566559;HIF1A:0.142106472152;CREB1:0.135389936045;LMO2:0.113389475131;EVI1:0.112457087013;POU6F1:0.109091652996;ARID5B:0.0681298842513;LHX3,4:0.0613737498055;ZBTB6:0.0478782432477;AR:0.0475838226951;HES1:0.0331999322323;EP300:0.0274608067735;HMGA1,2:0.0214952084976;GZF1:0.0202720249877;ZIC1..3:0.0100969900469;RBPJ:-0.0100998657616;MYBL2:-0.013633113498;SMAD1..7,9:-0.0137989360105;HLF:-0.0204141960369;FOXO1,3,4:-0.0250469462102;CRX:-0.0265892232955;HAND1,2:-0.0351883411336;NFE2:-0.0357073464208;MTF1:-0.0386317929278;HSF1,2:-0.0735744097512;YY1:-0.0861325129472;HNF1A:-0.0876503782414;LEF1_TCF7_TCF7L1,2:-0.0906084526263;GLI1..3:-0.104008711476;PAX2:-0.122267788513;ZNF238:-0.129610567678;GFI1B:-0.14237135047;ATF4:-0.142964417468;POU5F1:-0.147437679653;PAX5:-0.161958542796;FOXN1:-0.16524111111;MAZ:-0.174832182651;IKZF1:-0.175374747254;ATF5_CREB3:-0.176117810316;PAX4:-0.184291997065;TLX1..3_NFIC{dimer}:-0.184468099289;AHR_ARNT_ARNT2:-0.184616160511;HNF4A_NR2F1,2:-0.200672671897;TOPORS:-0.211327251557;FOXL1:-0.219989399622;SPI1:-0.228132239519;ZBTB16:-0.229368182758;REST:-0.230864803817;FOX{F1,F2,J1}:-0.232742969715;AIRE:-0.236608260967;MTE{core}:-0.237792338647;TFCP2:-0.240372134354;RXR{A,B,G}:-0.2421744772;FOXA2:-0.244154088636;NFKB1_REL_RELA:-0.250270650448;PBX1:-0.261191541583;DBP:-0.264844637297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.269451978501;GATA4:-0.273759913228;ALX4:-0.286711770994;IRF7:-0.288128232753;NR6A1:-0.289861037261;TLX2:-0.297266507585;POU3F1..4:-0.307463689296;TFAP2{A,C}:-0.307490872251;CUX2:-0.310085719163;RFX2..5_RFXANK_RFXAP:-0.327305412597;GATA6:-0.328873802223;ETS1,2:-0.346635672502;NKX3-1:-0.35432757376;ZNF423:-0.359359682882;ALX1:-0.359478405224;GCM1,2:-0.375831833299;NHLH1,2:-0.376635888253;RFX1:-0.379442619691;SPIB:-0.379625717053;PAX6:-0.387037415633;GTF2A1,2:-0.389401704947;SOX2:-0.403794735895;NFATC1..3:-0.412085497099;TFAP4:-0.428356391358;ATF2:-0.430285093931;FOXD3:-0.435295514571;EBF1:-0.444276941397;GTF2I:-0.444468193784;EGR1..3:-0.449100791722;IKZF2:-0.455273617498;JUN:-0.455765054371;MED-1{core}:-0.470168588105;RUNX1..3:-0.479553106156;FOXP3:-0.481219124943;PRDM1:-0.483366277903;ESR1:-0.485794142058;SRF:-0.496306747195;NFE2L2:-0.515572211358;BREu{core}:-0.526693747629;SOX{8,9,10}:-0.534045852211;ZNF384:-0.535348128461;PRRX1,2:-0.550725232061;MYFfamily:-0.553688349763;HIC1:-0.554294787209;ZFP161:-0.566443261969;ESRRA:-0.595520433558;BPTF:-0.600850937465;STAT2,4,6:-0.614814823743;DMAP1_NCOR{1,2}_SMARC:-0.615265125426;HOX{A6,A7,B6,B7}:-0.61832966526;CDX1,2,4:-0.645400445868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.680337780616;MEF2{A,B,C,D}:-0.716123147577;PITX1..3:-0.730008292505;FOXP1:-0.742855760698;SPZ1:-0.770163558304;RXRA_VDR{dimer}:-0.788220460885;RREB1:-0.792967916556;TGIF1:-0.836664285343;STAT1,3:-0.840719861333;FOX{D1,D2}:-0.849577893788;MAFB:-0.851482654505;NFE2L1:-0.867017321317;TFAP2B:-0.869280130875;PAX3,7:-0.870842164644;NKX6-1,2:-0.87531387398;IRF1,2:-0.876951364267;HOXA9_MEIS1:-0.966233936492;RORA:-0.986901077283;HMX1:-1.03769330659;ATF6:-1.10991258099;SREBF1,2:-1.1130897817;TAL1_TCF{3,4,12}:-1.11706781707;SOX5:-1.11951888996;PATZ1:-1.14479271182;NANOG{mouse}:-1.21392456561;MZF1:-1.22102058319;HBP1_HMGB_SSRP1_UBTF:-1.28303711454;XBP1:-1.52606127711 | |top_motifs=TP53:2.66242299691;TBX4,5:2.0235799271;VSX1,2:1.57039118423;ZEB1:1.53203121679;PPARG:1.35656265651;SNAI1..3:1.31241591214;POU1F1:1.29883764511;TEF:1.20445382798;FOXQ1:1.18607672484;FOX{I1,J2}:1.11238362964;NR3C1:1.0455301783;CDC5L:0.944877474062;PDX1:0.933441986302;NKX2-3_NKX2-5:0.918985900522;ONECUT1,2:0.918757549734;HOX{A4,D4}:0.905109301005;NKX2-2,8:0.763815744519;bHLH_family:0.73842118285;TEAD1:0.718836920951;ADNP_IRX_SIX_ZHX:0.713442853219;NKX3-2:0.712083667636;STAT5{A,B}:0.701415918627;E2F1..5:0.664452874373;FOXM1:0.6565504724;GFI1:0.570673472899;MYB:0.568765290212;NKX2-1,4:0.558460755395;HOX{A5,B5}:0.55394205832;FOS_FOS{B,L1}_JUN{B,D}:0.52440553891;TFDP1:0.523611644636;BACH2:0.469779658016;TBP:0.468172137329;EN1,2:0.429160586931;XCPE1{core}:0.426835931291;NFIL3:0.414793159298;NR5A1,2:0.413488260679;NFIX:0.407857470887;NR1H4:0.393963554862;UFEwm:0.389819543845;ELK1,4_GABP{A,B1}:0.388335458762;PAX8:0.360869747197;KLF4:0.360556345307;POU2F1..3:0.338161455799;NANOG:0.317264917404;ZNF148:0.312787042918;FOSL2:0.27866799917;ELF1,2,4:0.274350181848;MYOD1:0.268413195989;T:0.266712305569;NRF1:0.252629810355;PAX1,9:0.241797917957;ZNF143:0.239344408351;SP1:0.222852984232;SOX17:0.219076541836;CEBPA,B_DDIT3:0.205842603451;NFY{A,B,C}:0.202662877625;OCT4_SOX2{dimer}:0.153225566559;HIF1A:0.142106472152;CREB1:0.135389936045;LMO2:0.113389475131;EVI1:0.112457087013;POU6F1:0.109091652996;ARID5B:0.0681298842513;LHX3,4:0.0613737498055;ZBTB6:0.0478782432477;AR:0.0475838226951;HES1:0.0331999322323;EP300:0.0274608067735;HMGA1,2:0.0214952084976;GZF1:0.0202720249877;ZIC1..3:0.0100969900469;RBPJ:-0.0100998657616;MYBL2:-0.013633113498;SMAD1..7,9:-0.0137989360105;HLF:-0.0204141960369;FOXO1,3,4:-0.0250469462102;CRX:-0.0265892232955;HAND1,2:-0.0351883411336;NFE2:-0.0357073464208;MTF1:-0.0386317929278;HSF1,2:-0.0735744097512;YY1:-0.0861325129472;HNF1A:-0.0876503782414;LEF1_TCF7_TCF7L1,2:-0.0906084526263;GLI1..3:-0.104008711476;PAX2:-0.122267788513;ZNF238:-0.129610567678;GFI1B:-0.14237135047;ATF4:-0.142964417468;POU5F1:-0.147437679653;PAX5:-0.161958542796;FOXN1:-0.16524111111;MAZ:-0.174832182651;IKZF1:-0.175374747254;ATF5_CREB3:-0.176117810316;PAX4:-0.184291997065;TLX1..3_NFIC{dimer}:-0.184468099289;AHR_ARNT_ARNT2:-0.184616160511;HNF4A_NR2F1,2:-0.200672671897;TOPORS:-0.211327251557;FOXL1:-0.219989399622;SPI1:-0.228132239519;ZBTB16:-0.229368182758;REST:-0.230864803817;FOX{F1,F2,J1}:-0.232742969715;AIRE:-0.236608260967;MTE{core}:-0.237792338647;TFCP2:-0.240372134354;RXR{A,B,G}:-0.2421744772;FOXA2:-0.244154088636;NFKB1_REL_RELA:-0.250270650448;PBX1:-0.261191541583;DBP:-0.264844637297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.269451978501;GATA4:-0.273759913228;ALX4:-0.286711770994;IRF7:-0.288128232753;NR6A1:-0.289861037261;TLX2:-0.297266507585;POU3F1..4:-0.307463689296;TFAP2{A,C}:-0.307490872251;CUX2:-0.310085719163;RFX2..5_RFXANK_RFXAP:-0.327305412597;GATA6:-0.328873802223;ETS1,2:-0.346635672502;NKX3-1:-0.35432757376;ZNF423:-0.359359682882;ALX1:-0.359478405224;GCM1,2:-0.375831833299;NHLH1,2:-0.376635888253;RFX1:-0.379442619691;SPIB:-0.379625717053;PAX6:-0.387037415633;GTF2A1,2:-0.389401704947;SOX2:-0.403794735895;NFATC1..3:-0.412085497099;TFAP4:-0.428356391358;ATF2:-0.430285093931;FOXD3:-0.435295514571;EBF1:-0.444276941397;GTF2I:-0.444468193784;EGR1..3:-0.449100791722;IKZF2:-0.455273617498;JUN:-0.455765054371;MED-1{core}:-0.470168588105;RUNX1..3:-0.479553106156;FOXP3:-0.481219124943;PRDM1:-0.483366277903;ESR1:-0.485794142058;SRF:-0.496306747195;NFE2L2:-0.515572211358;BREu{core}:-0.526693747629;SOX{8,9,10}:-0.534045852211;ZNF384:-0.535348128461;PRRX1,2:-0.550725232061;MYFfamily:-0.553688349763;HIC1:-0.554294787209;ZFP161:-0.566443261969;ESRRA:-0.595520433558;BPTF:-0.600850937465;STAT2,4,6:-0.614814823743;DMAP1_NCOR{1,2}_SMARC:-0.615265125426;HOX{A6,A7,B6,B7}:-0.61832966526;CDX1,2,4:-0.645400445868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.680337780616;MEF2{A,B,C,D}:-0.716123147577;PITX1..3:-0.730008292505;FOXP1:-0.742855760698;SPZ1:-0.770163558304;RXRA_VDR{dimer}:-0.788220460885;RREB1:-0.792967916556;TGIF1:-0.836664285343;STAT1,3:-0.840719861333;FOX{D1,D2}:-0.849577893788;MAFB:-0.851482654505;NFE2L1:-0.867017321317;TFAP2B:-0.869280130875;PAX3,7:-0.870842164644;NKX6-1,2:-0.87531387398;IRF1,2:-0.876951364267;HOXA9_MEIS1:-0.966233936492;RORA:-0.986901077283;HMX1:-1.03769330659;ATF6:-1.10991258099;SREBF1,2:-1.1130897817;TAL1_TCF{3,4,12}:-1.11706781707;SOX5:-1.11951888996;PATZ1:-1.14479271182;NANOG{mouse}:-1.21392456561;MZF1:-1.22102058319;HBP1_HMGB_SSRP1_UBTF:-1.28303711454;XBP1:-1.52606127711 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11350-117G9;search_select_hide=table117:FF:11350-117G9 | |||
}} | }} | ||
Latest revision as of 17:54, 4 June 2020
| Name: | Mammary Epithelial Cell, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11382 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11382
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11382
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.455 |
| 10 | 10 | 0.884 |
| 100 | 100 | 0.591 |
| 101 | 101 | 0.195 |
| 102 | 102 | 0.194 |
| 103 | 103 | 0.0699 |
| 104 | 104 | 0.868 |
| 105 | 105 | 0.709 |
| 106 | 106 | 0.547 |
| 107 | 107 | 0.245 |
| 108 | 108 | 0.722 |
| 109 | 109 | 2.78611e-4 |
| 11 | 11 | 0.73 |
| 110 | 110 | 0.23 |
| 111 | 111 | 0.0359 |
| 112 | 112 | 0.834 |
| 113 | 113 | 0.0281 |
| 114 | 114 | 0.545 |
| 115 | 115 | 0.846 |
| 116 | 116 | 0.352 |
| 117 | 117 | 0.927 |
| 118 | 118 | 0.555 |
| 119 | 119 | 0.476 |
| 12 | 12 | 0.703 |
| 120 | 120 | 0.0182 |
| 121 | 121 | 0.972 |
| 122 | 122 | 0.223 |
| 123 | 123 | 0.345 |
| 124 | 124 | 0.056 |
| 125 | 125 | 0.429 |
| 126 | 126 | 0.403 |
| 127 | 127 | 0.059 |
| 128 | 128 | 0.285 |
| 129 | 129 | 0.14 |
| 13 | 13 | 0.0406 |
| 130 | 130 | 0.89 |
| 131 | 131 | 0.272 |
| 132 | 132 | 0.162 |
| 133 | 133 | 0.0171 |
| 134 | 134 | 0.236 |
| 135 | 135 | 0.756 |
| 136 | 136 | 0.0163 |
| 137 | 137 | 0.264 |
| 138 | 138 | 0.204 |
| 139 | 139 | 0.0775 |
| 14 | 14 | 0.608 |
| 140 | 140 | 0.822 |
| 141 | 141 | 0.225 |
| 142 | 142 | 0.507 |
| 143 | 143 | 0.512 |
| 144 | 144 | 0.0424 |
| 145 | 145 | 0.999 |
| 146 | 146 | 0.305 |
| 147 | 147 | 0.222 |
| 148 | 148 | 0.409 |
| 149 | 149 | 0.243 |
| 15 | 15 | 0.915 |
| 150 | 150 | 0.453 |
| 151 | 151 | 0.455 |
| 152 | 152 | 0.137 |
| 153 | 153 | 0.738 |
| 154 | 154 | 0.73 |
| 155 | 155 | 0.82 |
| 156 | 156 | 0.586 |
| 157 | 157 | 0.531 |
| 158 | 158 | 0.0439 |
| 159 | 159 | 0.519 |
| 16 | 16 | 0.00388 |
| 160 | 160 | 0.472 |
| 161 | 161 | 0.874 |
| 162 | 162 | 0.501 |
| 163 | 163 | 0.221 |
| 164 | 164 | 0.492 |
| 165 | 165 | 0.114 |
| 166 | 166 | 0.0678 |
| 167 | 167 | 0.81 |
| 168 | 168 | 0.284 |
| 169 | 169 | 0.0933 |
| 17 | 17 | 0.521 |
| 18 | 18 | 0.321 |
| 19 | 19 | 0.744 |
| 2 | 2 | 0.447 |
| 20 | 20 | 0.714 |
| 21 | 21 | 0.805 |
| 22 | 22 | 0.839 |
| 23 | 23 | 0.897 |
| 24 | 24 | 0.0031 |
| 25 | 25 | 0.501 |
| 26 | 26 | 0.956 |
| 27 | 27 | 0.747 |
| 28 | 28 | 0.312 |
| 29 | 29 | 0.228 |
| 3 | 3 | 0.951 |
| 30 | 30 | 0.0534 |
| 31 | 31 | 0.94 |
| 32 | 32 | 0.17 |
| 33 | 33 | 0.0618 |
| 34 | 34 | 0.181 |
| 35 | 35 | 0.0569 |
| 36 | 36 | 0.563 |
| 37 | 37 | 0.482 |
| 38 | 38 | 0.401 |
| 39 | 39 | 0.495 |
| 4 | 4 | 0.888 |
| 40 | 40 | 0.244 |
| 41 | 41 | 0.582 |
| 42 | 42 | 0.61 |
| 43 | 43 | 0.67 |
| 44 | 44 | 0.464 |
| 45 | 45 | 0.587 |
| 46 | 46 | 0.995 |
| 47 | 47 | 0.376 |
| 48 | 48 | 0.09 |
| 49 | 49 | 0.366 |
| 5 | 5 | 0.614 |
| 50 | 50 | 0.301 |
| 51 | 51 | 1 |
| 52 | 52 | 0.887 |
| 53 | 53 | 0.189 |
| 54 | 54 | 0.928 |
| 55 | 55 | 0.567 |
| 56 | 56 | 0.498 |
| 57 | 57 | 0.375 |
| 58 | 58 | 0.876 |
| 59 | 59 | 0.86 |
| 6 | 6 | 0.75 |
| 60 | 60 | 0.457 |
| 61 | 61 | 0.414 |
| 62 | 62 | 0.517 |
| 63 | 63 | 0.194 |
| 64 | 64 | 0.971 |
| 65 | 65 | 0.976 |
| 66 | 66 | 0.0811 |
| 67 | 67 | 0.938 |
| 68 | 68 | 0.314 |
| 69 | 69 | 0.375 |
| 7 | 7 | 0.451 |
| 70 | 70 | 0.677 |
| 71 | 71 | 0.149 |
| 72 | 72 | 0.976 |
| 73 | 73 | 0.00836 |
| 74 | 74 | 0.552 |
| 75 | 75 | 0.133 |
| 76 | 76 | 0.834 |
| 77 | 77 | 0.619 |
| 78 | 78 | 0.146 |
| 79 | 79 | 0.0977 |
| 8 | 8 | 0.655 |
| 80 | 80 | 0.878 |
| 81 | 81 | 0.857 |
| 82 | 82 | 0.503 |
| 83 | 83 | 0.442 |
| 84 | 84 | 0.0802 |
| 85 | 85 | 0.137 |
| 86 | 86 | 0.331 |
| 87 | 87 | 0.00462 |
| 88 | 88 | 0.867 |
| 89 | 89 | 0.0196 |
| 9 | 9 | 0.264 |
| 90 | 90 | 0.685 |
| 91 | 91 | 0.933 |
| 92 | 92 | 0.356 |
| 93 | 93 | 0.596 |
| 94 | 94 | 0.492 |
| 95 | 95 | 0.00395 |
| 96 | 96 | 0.736 |
| 97 | 97 | 0.455 |
| 98 | 98 | 0.736 |
| 99 | 99 | 0.0405 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11382
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000088 (human mammary epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
