FF:11381-118B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005539 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005539!sRNA-Seq@SAMD00005539 | ||
|accession_numbers=CAGE;DRX008128;DRR009000;DRZ000425;DRZ001810;DRZ011775;DRZ013160 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057110;DRR062869;DRZ007945!sRNA-Seq;DRX037142;DRR041508;DRZ007150 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000024 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11381-118B4 | |id=FF:11381-118B4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000024 | ||
|is_obsolete= | |||
|library_id=CNhs11997 | |||
|library_id_phase_based=2:CNhs11997 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11381 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GTGAAA.11381 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11381 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GTGAAA.11381 | |||
|name=CD14+ Monocytes, donor3 | |name=CD14+ Monocytes, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11997,LSID837,release011,COMPLETED | |profile_hcage=CNhs11997,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=3H100-30-10 | |rna_catalog_number=3H100-30-10 | ||
Line 56: | Line 82: | ||
|rna_tube_id=118B4 | |rna_tube_id=118B4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=RDhi10052!SRhi10009.GTGAAA | |||
|sample_age=53 | |sample_age=53 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.39738512467695e-240!GO:0043227;membrane-bound organelle;8.82212153720002e-142!GO:0043231;intracellular membrane-bound organelle;1.68252864836486e-141!GO:0043226;organelle;1.07933578007248e-131!GO:0043229;intracellular organelle;6.93624262069993e-131!GO:0005737;cytoplasm;1.09056542986636e-128!GO:0044444;cytoplasmic part;5.10964605411273e-79!GO:0044422;organelle part;3.06433266347101e-78!GO:0043170;macromolecule metabolic process;3.85556927516544e-77!GO:0044446;intracellular organelle part;1.18410055077254e-76!GO:0044237;cellular metabolic process;4.77219567209675e-75!GO:0044238;primary metabolic process;1.19221868579403e-74!GO:0005515;protein binding;1.61484083800106e-74!GO:0005634;nucleus;3.5926473260621e-68!GO:0032991;macromolecular complex;8.43871223855587e-59!GO:0003723;RNA binding;8.73531505134581e-57!GO:0044428;nuclear part;1.35067150732085e-54!GO:0043283;biopolymer metabolic process;1.07153393362603e-50!GO:0019538;protein metabolic process;8.1919979137224e-50!GO:0030529;ribonucleoprotein complex;9.81188916526243e-48!GO:0044267;cellular protein metabolic process;3.90579501120435e-46!GO:0044260;cellular macromolecule metabolic process;1.33065751254844e-45!GO:0033036;macromolecule localization;3.29601071207385e-44!GO:0043233;organelle lumen;7.85190870221114e-44!GO:0031974;membrane-enclosed lumen;7.85190870221114e-44!GO:0015031;protein transport;5.05324463499369e-43!GO:0045184;establishment of protein localization;2.51863458207914e-42!GO:0008104;protein localization;5.61144181127589e-41!GO:0010467;gene expression;7.16007573348465e-41!GO:0006412;translation;1.0145210641136e-37!GO:0031981;nuclear lumen;9.76933479103813e-35!GO:0031090;organelle membrane;3.1511992567406e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.99726530358117e-34!GO:0016071;mRNA metabolic process;1.72423710548929e-32!GO:0006915;apoptosis;1.86171795347346e-31!GO:0012501;programmed cell death;1.99627793292125e-31!GO:0006396;RNA processing;3.90808861183849e-31!GO:0005829;cytosol;7.9411864060487e-31!GO:0043234;protein complex;8.42459987409295e-31!GO:0016043;cellular component organization and biogenesis;8.42459987409295e-31!GO:0008219;cell death;9.65148345796676e-30!GO:0016265;death;9.65148345796676e-30!GO:0009059;macromolecule biosynthetic process;4.69578801087398e-29!GO:0005739;mitochondrion;9.40467444526485e-29!GO:0006886;intracellular protein transport;1.53853459311151e-28!GO:0046907;intracellular transport;2.14010999814201e-28!GO:0008380;RNA splicing;1.11732349912915e-27!GO:0031967;organelle envelope;1.19681328112069e-26!GO:0031975;envelope;2.38386334012228e-26!GO:0006397;mRNA processing;3.51310664355144e-26!GO:0005840;ribosome;8.40840996644202e-25!GO:0009058;biosynthetic process;5.11313322173446e-24!GO:0065003;macromolecular complex assembly;5.18051993298479e-24!GO:0043412;biopolymer modification;5.18051993298479e-24!GO:0000166;nucleotide binding;5.97442536819463e-24!GO:0005654;nucleoplasm;6.24177439352686e-24!GO:0044249;cellular biosynthetic process;4.07038157204002e-23!GO:0008134;transcription factor binding;6.83151670387556e-23!GO:0003676;nucleic acid binding;1.22153974795566e-22!GO:0033279;ribosomal subunit;2.85451454383946e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.27191270541297e-22!GO:0003735;structural constituent of ribosome;4.74842364125553e-22!GO:0006464;protein modification process;5.33240950467334e-22!GO:0044429;mitochondrial part;6.4639160365824e-22!GO:0051649;establishment of cellular localization;7.03111605148727e-22!GO:0051641;cellular localization;1.16703485771932e-21!GO:0022607;cellular component assembly;3.80065654102939e-21!GO:0016070;RNA metabolic process;4.72070361506645e-21!GO:0050794;regulation of cellular process;9.13292999787259e-21!GO:0042981;regulation of apoptosis;9.51178509520515e-21!GO:0043687;post-translational protein modification;1.14504041153545e-20!GO:0043067;regulation of programmed cell death;1.95830242469929e-20!GO:0005681;spliceosome;2.39614988891854e-20!GO:0044451;nucleoplasm part;2.65996298427109e-20!GO:0006512;ubiquitin cycle;9.40840068514811e-20!GO:0044445;cytosolic part;4.55854234584144e-19!GO:0044265;cellular macromolecule catabolic process;4.31233362466193e-18!GO:0032553;ribonucleotide binding;5.79949771866336e-18!GO:0032555;purine ribonucleotide binding;5.79949771866336e-18!GO:0048523;negative regulation of cellular process;7.59805595192192e-18!GO:0006996;organelle organization and biogenesis;1.60701436452865e-17!GO:0007243;protein kinase cascade;1.67144245877772e-17!GO:0006259;DNA metabolic process;4.77509514624418e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.35000169000817e-17!GO:0017076;purine nucleotide binding;5.95609494928021e-17!GO:0007242;intracellular signaling cascade;6.85559146712479e-17!GO:0005740;mitochondrial envelope;9.90380408777929e-17!GO:0019941;modification-dependent protein catabolic process;1.03801934462283e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.03801934462283e-16!GO:0016192;vesicle-mediated transport;1.05083306163791e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.25985075410965e-16!GO:0050789;regulation of biological process;1.54204180657525e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.55877014880267e-16!GO:0031966;mitochondrial membrane;1.85222763336481e-16!GO:0044257;cellular protein catabolic process;2.08184267369949e-16!GO:0006793;phosphorus metabolic process;2.52466515412516e-16!GO:0006796;phosphate metabolic process;2.52466515412516e-16!GO:0048519;negative regulation of biological process;1.13711875639413e-15!GO:0006913;nucleocytoplasmic transport;1.24712448187409e-15!GO:0017111;nucleoside-triphosphatase activity;1.26315097333885e-15!GO:0006605;protein targeting;2.11959791631167e-15!GO:0016462;pyrophosphatase activity;2.44442156235436e-15!GO:0006119;oxidative phosphorylation;2.72184676044752e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.72184676044752e-15!GO:0051169;nuclear transport;2.80796699673638e-15!GO:0043285;biopolymer catabolic process;2.94670880594253e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;3.6347593998623e-15!GO:0019866;organelle inner membrane;5.59490413744186e-15!GO:0022618;protein-RNA complex assembly;1.15444349041765e-14!GO:0016874;ligase activity;1.54748989278512e-14!GO:0016604;nuclear body;2.97903651349981e-14!GO:0005524;ATP binding;3.11261609370132e-14!GO:0016310;phosphorylation;4.18346900091663e-14!GO:0003712;transcription cofactor activity;4.63600142835093e-14!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.74728076964607e-14!GO:0032559;adenyl ribonucleotide binding;6.31243491932743e-14!GO:0065009;regulation of a molecular function;1.2855318390521e-13!GO:0048770;pigment granule;1.2855318390521e-13!GO:0042470;melanosome;1.2855318390521e-13!GO:0005794;Golgi apparatus;2.04815624190859e-13!GO:0065007;biological regulation;2.08423922562222e-13!GO:0012505;endomembrane system;2.42309112570691e-13!GO:0009057;macromolecule catabolic process;2.72912589995948e-13!GO:0006366;transcription from RNA polymerase II promoter;4.70882361268349e-13!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.70882361268349e-13!GO:0002376;immune system process;5.19917321095195e-13!GO:0030554;adenyl nucleotide binding;7.48940879493984e-13!GO:0005768;endosome;8.4112179981495e-13!GO:0005743;mitochondrial inner membrane;1.10532228170814e-12!GO:0008135;translation factor activity, nucleic acid binding;1.2473546209555e-12!GO:0051246;regulation of protein metabolic process;1.37710281689438e-12!GO:0016607;nuclear speck;1.5265830130053e-12!GO:0044248;cellular catabolic process;1.70682075996982e-12!GO:0019222;regulation of metabolic process;2.34659612887989e-12!GO:0030163;protein catabolic process;3.97148523438218e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.59781374972276e-12!GO:0043069;negative regulation of programmed cell death;7.9065762208267e-12!GO:0005773;vacuole;9.22144511615414e-12!GO:0043066;negative regulation of apoptosis;9.71708673790623e-12!GO:0015935;small ribosomal subunit;1.09174641551215e-11!GO:0015934;large ribosomal subunit;1.15731198180506e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.57341556280531e-11!GO:0007049;cell cycle;2.24882196829216e-11!GO:0031324;negative regulation of cellular metabolic process;4.10632547847059e-11!GO:0044455;mitochondrial membrane part;5.41773731016509e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;6.21081744937983e-11!GO:0008639;small protein conjugating enzyme activity;6.95020095758365e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.26156145466918e-11!GO:0006916;anti-apoptosis;9.6719842415055e-11!GO:0005635;nuclear envelope;9.8155909849521e-11!GO:0004842;ubiquitin-protein ligase activity;9.99842098187624e-11!GO:0017038;protein import;1.56760717428376e-10!GO:0005730;nucleolus;1.61182492381676e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.74460510882761e-10!GO:0000323;lytic vacuole;2.04593252780412e-10!GO:0005764;lysosome;2.04593252780412e-10!GO:0016564;transcription repressor activity;2.17890162082918e-10!GO:0051726;regulation of cell cycle;2.76901075664561e-10!GO:0006323;DNA packaging;2.92338434185672e-10!GO:0006413;translational initiation;3.71658981471119e-10!GO:0003743;translation initiation factor activity;3.99748257065916e-10!GO:0000074;regulation of progression through cell cycle;4.55925656822814e-10!GO:0019787;small conjugating protein ligase activity;4.8053328140815e-10!GO:0006446;regulation of translational initiation;5.73142257451692e-10!GO:0048522;positive regulation of cellular process;6.04034426935205e-10!GO:0005746;mitochondrial respiratory chain;7.2525300790755e-10!GO:0009892;negative regulation of metabolic process;1.04788536172842e-09!GO:0050790;regulation of catalytic activity;1.09883769234279e-09!GO:0007264;small GTPase mediated signal transduction;1.26336807788112e-09!GO:0031965;nuclear membrane;1.55662450436811e-09!GO:0045786;negative regulation of progression through cell cycle;1.61643198599761e-09!GO:0019899;enzyme binding;1.66317394105858e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.80679768815123e-09!GO:0000375;RNA splicing, via transesterification reactions;1.80679768815123e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.80679768815123e-09!GO:0006606;protein import into nucleus;1.80679768815123e-09!GO:0006457;protein folding;1.83874947863145e-09!GO:0051170;nuclear import;1.87633003299512e-09!GO:0016568;chromatin modification;1.9231465464751e-09!GO:0043228;non-membrane-bound organelle;1.94311400581643e-09!GO:0043232;intracellular non-membrane-bound organelle;1.94311400581643e-09!GO:0031323;regulation of cellular metabolic process;2.09935319646336e-09!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.91948072639919e-09!GO:0042623;ATPase activity, coupled;3.80341459140248e-09!GO:0043065;positive regulation of apoptosis;4.0004659093165e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.0004659093165e-09!GO:0006955;immune response;4.73879817216117e-09!GO:0051276;chromosome organization and biogenesis;4.79415147602426e-09!GO:0048518;positive regulation of biological process;5.55401009219247e-09!GO:0043068;positive regulation of programmed cell death;5.74386057233088e-09!GO:0044453;nuclear membrane part;7.68587668567598e-09!GO:0050136;NADH dehydrogenase (quinone) activity;8.43263439210569e-09!GO:0003954;NADH dehydrogenase activity;8.43263439210569e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.43263439210569e-09!GO:0009615;response to virus;1.11708820070791e-08!GO:0009967;positive regulation of signal transduction;1.14250576894684e-08!GO:0006417;regulation of translation;1.20488768020919e-08!GO:0016481;negative regulation of transcription;1.3171326258666e-08!GO:0016887;ATPase activity;1.41470546554911e-08!GO:0009966;regulation of signal transduction;1.44733999698144e-08!GO:0003713;transcription coactivator activity;1.78581512171438e-08!GO:0004386;helicase activity;1.92428920123766e-08!GO:0019829;cation-transporting ATPase activity;1.93521474451891e-08!GO:0016787;hydrolase activity;1.96344567222076e-08!GO:0016881;acid-amino acid ligase activity;2.18194109262647e-08!GO:0006917;induction of apoptosis;2.68327716232429e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.80872149532492e-08!GO:0016563;transcription activator activity;3.01510138374085e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.07305675314037e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.10089706506835e-08!GO:0005783;endoplasmic reticulum;3.48214380920519e-08!GO:0008047;enzyme activator activity;4.60737428916106e-08!GO:0012502;induction of programmed cell death;4.78133021449303e-08!GO:0030695;GTPase regulator activity;5.07071999407755e-08!GO:0008026;ATP-dependent helicase activity;5.70999570899812e-08!GO:0048193;Golgi vesicle transport;5.70999570899812e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.36373576393975e-08!GO:0004674;protein serine/threonine kinase activity;7.29089357855784e-08!GO:0051186;cofactor metabolic process;7.41730311665663e-08!GO:0022402;cell cycle process;8.16502454934832e-08!GO:0006950;response to stress;8.36006539767323e-08!GO:0050657;nucleic acid transport;8.36153407480753e-08!GO:0051236;establishment of RNA localization;8.36153407480753e-08!GO:0050658;RNA transport;8.36153407480753e-08!GO:0010468;regulation of gene expression;8.44350945417917e-08!GO:0016740;transferase activity;1.0423685125482e-07!GO:0006974;response to DNA damage stimulus;1.07298857355868e-07!GO:0042775;organelle ATP synthesis coupled electron transport;1.13878340508894e-07!GO:0042773;ATP synthesis coupled electron transport;1.13878340508894e-07!GO:0006461;protein complex assembly;1.14473336423718e-07!GO:0006403;RNA localization;1.1945038671728e-07!GO:0030964;NADH dehydrogenase complex (quinone);2.27836158913034e-07!GO:0045271;respiratory chain complex I;2.27836158913034e-07!GO:0005747;mitochondrial respiratory chain complex I;2.27836158913034e-07!GO:0044440;endosomal part;2.54040505818774e-07!GO:0010008;endosome membrane;2.54040505818774e-07!GO:0044432;endoplasmic reticulum part;2.94171156702013e-07!GO:0031326;regulation of cellular biosynthetic process;3.5860902247293e-07!GO:0015986;ATP synthesis coupled proton transport;3.5860902247293e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.5860902247293e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.0095488574527e-07!GO:0009889;regulation of biosynthetic process;4.1343781749735e-07!GO:0005793;ER-Golgi intermediate compartment;4.22143862444626e-07!GO:0005770;late endosome;4.28772476543285e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.45223112951066e-07!GO:0031980;mitochondrial lumen;4.45484405149232e-07!GO:0005759;mitochondrial matrix;4.45484405149232e-07!GO:0008565;protein transporter activity;4.54071397047818e-07!GO:0006350;transcription;4.64095237655036e-07!GO:0005643;nuclear pore;5.46284604185987e-07!GO:0009056;catabolic process;5.48772363250495e-07!GO:0051082;unfolded protein binding;5.52849688937989e-07!GO:0032446;protein modification by small protein conjugation;7.08584755317804e-07!GO:0006164;purine nucleotide biosynthetic process;7.33180560003852e-07!GO:0009260;ribonucleotide biosynthetic process;7.38028507147102e-07!GO:0048468;cell development;7.82686623787116e-07!GO:0009259;ribonucleotide metabolic process;7.82686623787116e-07!GO:0006732;coenzyme metabolic process;8.65760152632419e-07!GO:0003714;transcription corepressor activity;8.74435523398718e-07!GO:0009150;purine ribonucleotide metabolic process;9.57450332760516e-07!GO:0007265;Ras protein signal transduction;9.67482760820613e-07!GO:0016567;protein ubiquitination;1.02941927825897e-06!GO:0006163;purine nucleotide metabolic process;1.52126328768935e-06!GO:0045321;leukocyte activation;1.55908562642372e-06!GO:0051028;mRNA transport;1.73947952340628e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.86390858809734e-06!GO:0003924;GTPase activity;2.02304341600229e-06!GO:0005525;GTP binding;2.11803788221911e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.12391265349463e-06!GO:0048475;coated membrane;2.18363122017793e-06!GO:0030117;membrane coat;2.18363122017793e-06!GO:0051336;regulation of hydrolase activity;2.35211758605818e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.775760882002e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.81280496398526e-06!GO:0005083;small GTPase regulator activity;3.26264896660577e-06!GO:0005774;vacuolar membrane;3.73394884713578e-06!GO:0006754;ATP biosynthetic process;3.73394884713578e-06!GO:0006753;nucleoside phosphate metabolic process;3.73394884713578e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.92915489477781e-06!GO:0016301;kinase activity;3.96614203602339e-06!GO:0042110;T cell activation;4.29465091469793e-06!GO:0008632;apoptotic program;4.34663075685153e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.9084715745232e-06!GO:0005096;GTPase activator activity;5.15670995802698e-06!GO:0030120;vesicle coat;5.2105799444888e-06!GO:0030662;coated vesicle membrane;5.2105799444888e-06!GO:0016044;membrane organization and biogenesis;5.55384460027767e-06!GO:0016773;phosphotransferase activity, alcohol group as acceptor;5.71076840885085e-06!GO:0005789;endoplasmic reticulum membrane;6.38094281694628e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.94269514559305e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.94269514559305e-06!GO:0006281;DNA repair;7.98823763614548e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.40750464321302e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.40750464321302e-06!GO:0006401;RNA catabolic process;9.08750369354937e-06!GO:0016197;endosome transport;1.36437010716331e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.38792823318493e-05!GO:0060090;molecular adaptor activity;1.45786524543734e-05!GO:0065002;intracellular protein transport across a membrane;1.62575645669429e-05!GO:0003697;single-stranded DNA binding;1.63358517610473e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.64903889595631e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.67949271518263e-05!GO:0044437;vacuolar part;1.6902902836403e-05!GO:0046930;pore complex;1.6902902836403e-05!GO:0046649;lymphocyte activation;1.83266328417049e-05!GO:0031252;leading edge;1.95401668663678e-05!GO:0005769;early endosome;1.9586520317623e-05!GO:0006333;chromatin assembly or disassembly;1.98978846415701e-05!GO:0043566;structure-specific DNA binding;2.041094452364e-05!GO:0005765;lysosomal membrane;2.26460205505773e-05!GO:0046034;ATP metabolic process;2.26866728370649e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.32371358693376e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.85562802827156e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.85562802827156e-05!GO:0065004;protein-DNA complex assembly;3.2365948053732e-05!GO:0009055;electron carrier activity;3.42673714594514e-05!GO:0044431;Golgi apparatus part;3.45252993875717e-05!GO:0009060;aerobic respiration;3.58458314274443e-05!GO:0045449;regulation of transcription;3.60215524529367e-05!GO:0051188;cofactor biosynthetic process;3.75862825719143e-05!GO:0032561;guanyl ribonucleotide binding;3.77875124287539e-05!GO:0019001;guanyl nucleotide binding;3.77875124287539e-05!GO:0006402;mRNA catabolic process;4.02400278990374e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.12636882309258e-05!GO:0051338;regulation of transferase activity;4.37471312533782e-05!GO:0000151;ubiquitin ligase complex;4.47090657067435e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.49919035885055e-05!GO:0007050;cell cycle arrest;4.79121122390069e-05!GO:0009141;nucleoside triphosphate metabolic process;4.81100169162369e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.8906338516965e-05!GO:0051168;nuclear export;5.2947966640775e-05!GO:0004298;threonine endopeptidase activity;5.39530755371994e-05!GO:0006468;protein amino acid phosphorylation;5.56910003793926e-05!GO:0006351;transcription, DNA-dependent;6.61795832978812e-05!GO:0045259;proton-transporting ATP synthase complex;6.67797485595688e-05!GO:0032774;RNA biosynthetic process;6.82283357994695e-05!GO:0030097;hemopoiesis;7.87483652364313e-05!GO:0043549;regulation of kinase activity;8.01970288015853e-05!GO:0009108;coenzyme biosynthetic process;9.33192986811358e-05!GO:0030532;small nuclear ribonucleoprotein complex;9.60272548142836e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.95962478663265e-05!GO:0005057;receptor signaling protein activity;0.000103348512125806!GO:0051090;regulation of transcription factor activity;0.000106127974328275!GO:0009607;response to biotic stimulus;0.000115267792627122!GO:0003724;RNA helicase activity;0.000115267792627122!GO:0008234;cysteine-type peptidase activity;0.000116432052397779!GO:0009893;positive regulation of metabolic process;0.000118154922024888!GO:0006888;ER to Golgi vesicle-mediated transport;0.000118567801053815!GO:0006897;endocytosis;0.000125640886579245!GO:0010324;membrane invagination;0.000125640886579245!GO:0005813;centrosome;0.000138192392792551!GO:0009719;response to endogenous stimulus;0.000142591909945155!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000143467703832831!GO:0015399;primary active transmembrane transporter activity;0.000143467703832831!GO:0001775;cell activation;0.000145655579199451!GO:0031982;vesicle;0.000165151450636842!GO:0042254;ribosome biogenesis and assembly;0.000165972161688577!GO:0031902;late endosome membrane;0.000169504043694815!GO:0046983;protein dimerization activity;0.000184316018589071!GO:0045859;regulation of protein kinase activity;0.000188978262501574!GO:0006752;group transfer coenzyme metabolic process;0.000209813330230248!GO:0046822;regulation of nucleocytoplasmic transport;0.000212648324435494!GO:0001816;cytokine production;0.000230691788785642!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000233135132308776!GO:0006613;cotranslational protein targeting to membrane;0.000243709496243195!GO:0005694;chromosome;0.000246997338834445!GO:0045333;cellular respiration;0.000250071437565287!GO:0008654;phospholipid biosynthetic process;0.000250359304459142!GO:0045941;positive regulation of transcription;0.000261165916024032!GO:0043087;regulation of GTPase activity;0.000270573632171734!GO:0022415;viral reproductive process;0.000282028463980103!GO:0000785;chromatin;0.0002832437381023!GO:0002757;immune response-activating signal transduction;0.000286101347084838!GO:0008270;zinc ion binding;0.000287189163601116!GO:0005070;SH3/SH2 adaptor activity;0.000308934036637279!GO:0002520;immune system development;0.000346891790222228!GO:0005885;Arp2/3 protein complex;0.000366224065618149!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000378517631044047!GO:0001819;positive regulation of cytokine production;0.000392076731441495!GO:0005798;Golgi-associated vesicle;0.000393976793838221!GO:0051223;regulation of protein transport;0.000414501678081827!GO:0005667;transcription factor complex;0.000434354838709849!GO:0000245;spliceosome assembly;0.000446000934359359!GO:0007034;vacuolar transport;0.000460653272256046!GO:0019904;protein domain specific binding;0.000494081638399838!GO:0006919;caspase activation;0.000502431497399014!GO:0030099;myeloid cell differentiation;0.000518053280725518!GO:0005815;microtubule organizing center;0.000523400865950311!GO:0043623;cellular protein complex assembly;0.000534024547704932!GO:0000139;Golgi membrane;0.000534024547704932!GO:0042802;identical protein binding;0.000537426338634817!GO:0003729;mRNA binding;0.000555888190883012!GO:0043281;regulation of caspase activity;0.000560818013169756!GO:0043492;ATPase activity, coupled to movement of substances;0.000613656482975354!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.000657060678208601!GO:0005637;nuclear inner membrane;0.000664000561295437!GO:0043280;positive regulation of caspase activity;0.00066438707067605!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00066833351451896!GO:0030658;transport vesicle membrane;0.000721414939703055!GO:0031410;cytoplasmic vesicle;0.000729206495692172!GO:0045893;positive regulation of transcription, DNA-dependent;0.000730552852620155!GO:0002764;immune response-regulating signal transduction;0.000751946483669696!GO:0007005;mitochondrion organization and biogenesis;0.000754651883144723!GO:0007041;lysosomal transport;0.000788402024437808!GO:0051427;hormone receptor binding;0.000809352098105661!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00083896342765159!GO:0045637;regulation of myeloid cell differentiation;0.000871527732093286!GO:0006355;regulation of transcription, DNA-dependent;0.000880664383882581!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000921350564041274!GO:0006399;tRNA metabolic process;0.000964043962166217!GO:0008186;RNA-dependent ATPase activity;0.000997415530364204!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00100709467753845!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00102550376128606!GO:0030036;actin cytoskeleton organization and biogenesis;0.00104089294985246!GO:0005761;mitochondrial ribosome;0.00104734850303567!GO:0000313;organellar ribosome;0.00104734850303567!GO:0031901;early endosome membrane;0.00107458781877563!GO:0000278;mitotic cell cycle;0.00110079612405479!GO:0048534;hemopoietic or lymphoid organ development;0.00111735861036052!GO:0001726;ruffle;0.00113057846456874!GO:0046519;sphingoid metabolic process;0.00117205482755541!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00119223166346707!GO:0002521;leukocyte differentiation;0.00127633456316586!GO:0035257;nuclear hormone receptor binding;0.00129547873436441!GO:0016363;nuclear matrix;0.0013299471393994!GO:0006099;tricarboxylic acid cycle;0.00136981255147492!GO:0046356;acetyl-CoA catabolic process;0.00136981255147492!GO:0031325;positive regulation of cellular metabolic process;0.00138860530124442!GO:0046578;regulation of Ras protein signal transduction;0.00140913080033109!GO:0031988;membrane-bound vesicle;0.00142680911638244!GO:0032940;secretion by cell;0.00142680911638244!GO:0044427;chromosomal part;0.00146214590056368!GO:0033157;regulation of intracellular protein transport;0.00146543407425843!GO:0042306;regulation of protein import into nucleus;0.00146543407425843!GO:0051251;positive regulation of lymphocyte activation;0.00147528677219149!GO:0005741;mitochondrial outer membrane;0.00148727521737983!GO:0005099;Ras GTPase activator activity;0.00159837331675665!GO:0030118;clathrin coat;0.00165668534577297!GO:0032318;regulation of Ras GTPase activity;0.00165893409969281!GO:0006818;hydrogen transport;0.00165893409969281!GO:0043085;positive regulation of catalytic activity;0.00169745811606387!GO:0051056;regulation of small GTPase mediated signal transduction;0.00171393419489925!GO:0001817;regulation of cytokine production;0.00171816557651745!GO:0033673;negative regulation of kinase activity;0.00172076947628805!GO:0006469;negative regulation of protein kinase activity;0.00172076947628805!GO:0030660;Golgi-associated vesicle membrane;0.00175524216798543!GO:0006672;ceramide metabolic process;0.00175969884032536!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00183979098415223!GO:0033116;ER-Golgi intermediate compartment membrane;0.00187907205047899!GO:0006643;membrane lipid metabolic process;0.00204935211829802!GO:0016791;phosphoric monoester hydrolase activity;0.00206647878112638!GO:0051348;negative regulation of transferase activity;0.00207590519313662!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00209052138812601!GO:0015992;proton transport;0.00209341762976765!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.00210807457611641!GO:0006260;DNA replication;0.00219495211468071!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00223744491278885!GO:0004812;aminoacyl-tRNA ligase activity;0.00223744491278885!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00223744491278885!GO:0006612;protein targeting to membrane;0.00238331407289135!GO:0004004;ATP-dependent RNA helicase activity;0.0024637462093511!GO:0000082;G1/S transition of mitotic cell cycle;0.00250529292100122!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00254661283607083!GO:0009117;nucleotide metabolic process;0.00266011082980666!GO:0016779;nucleotidyltransferase activity;0.00266011082980666!GO:0043433;negative regulation of transcription factor activity;0.00267672365146049!GO:0045646;regulation of erythrocyte differentiation;0.00267672365146049!GO:0004672;protein kinase activity;0.00269496878241856!GO:0016281;eukaryotic translation initiation factor 4F complex;0.002739012857867!GO:0051345;positive regulation of hydrolase activity;0.002739012857867!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0028700915895536!GO:0007040;lysosome organization and biogenesis;0.00295036452904668!GO:0007259;JAK-STAT cascade;0.00299159664650585!GO:0022890;inorganic cation transmembrane transporter activity;0.00299159664650585!GO:0030217;T cell differentiation;0.00299739315338698!GO:0018193;peptidyl-amino acid modification;0.00306318604849709!GO:0016023;cytoplasmic membrane-bound vesicle;0.00311550966097347!GO:0051059;NF-kappaB binding;0.00316908666042929!GO:0006084;acetyl-CoA metabolic process;0.00319954499230363!GO:0017091;AU-rich element binding;0.00323198333680789!GO:0050779;RNA destabilization;0.00323198333680789!GO:0000289;poly(A) tail shortening;0.00323198333680789!GO:0051329;interphase of mitotic cell cycle;0.0032343312892896!GO:0051092;activation of NF-kappaB transcription factor;0.00328228330960615!GO:0046914;transition metal ion binding;0.00334815525138513!GO:0031968;organelle outer membrane;0.00335719971863269!GO:0016311;dephosphorylation;0.00336162871380802!GO:0030258;lipid modification;0.00339457088126455!GO:0043021;ribonucleoprotein binding;0.00342577454502097!GO:0016072;rRNA metabolic process;0.00347194354514314!GO:0030384;phosphoinositide metabolic process;0.00349251657825788!GO:0043038;amino acid activation;0.00356291982081786!GO:0006418;tRNA aminoacylation for protein translation;0.00356291982081786!GO:0043039;tRNA aminoacylation;0.00356291982081786!GO:0006611;protein export from nucleus;0.00357488805032952!GO:0051187;cofactor catabolic process;0.00366117161154157!GO:0006364;rRNA processing;0.00374017389588037!GO:0006607;NLS-bearing substrate import into nucleus;0.00374122012348726!GO:0019901;protein kinase binding;0.0037417534559797!GO:0019867;outer membrane;0.00380151569794635!GO:0042990;regulation of transcription factor import into nucleus;0.00381453463009997!GO:0042991;transcription factor import into nucleus;0.00381453463009997!GO:0031497;chromatin assembly;0.00390011258280134!GO:0051325;interphase;0.00412169350221691!GO:0051252;regulation of RNA metabolic process;0.00429264587821237!GO:0002274;myeloid leukocyte activation;0.00431415053047857!GO:0006650;glycerophospholipid metabolic process;0.00446292552241411!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00466146909084531!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00466146909084531!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00466146909084531!GO:0006891;intra-Golgi vesicle-mediated transport;0.00466146909084531!GO:0008287;protein serine/threonine phosphatase complex;0.00470498275439021!GO:0004428;inositol or phosphatidylinositol kinase activity;0.00473956521001899!GO:0019210;kinase inhibitor activity;0.00493410364575796!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00493754176123424!GO:0015631;tubulin binding;0.00495455860013867!GO:0006334;nucleosome assembly;0.00498472547066326!GO:0031625;ubiquitin protein ligase binding;0.00505574543700033!GO:0051789;response to protein stimulus;0.00505790265651276!GO:0006986;response to unfolded protein;0.00505790265651276!GO:0004860;protein kinase inhibitor activity;0.00515922893230091!GO:0007033;vacuole organization and biogenesis;0.00515922893230091!GO:0000118;histone deacetylase complex;0.0051976512233403!GO:0003725;double-stranded RNA binding;0.00524521025681775!GO:0043488;regulation of mRNA stability;0.00525470336184093!GO:0043487;regulation of RNA stability;0.00525470336184093!GO:0048471;perinuclear region of cytoplasm;0.00550283012603726!GO:0044262;cellular carbohydrate metabolic process;0.00552011062404669!GO:0019783;small conjugating protein-specific protease activity;0.00556224769454824!GO:0004722;protein serine/threonine phosphatase activity;0.00569378605808713!GO:0045746;negative regulation of Notch signaling pathway;0.00597522773000093!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00616574822100318!GO:0004185;serine carboxypeptidase activity;0.00653258616177573!GO:0009109;coenzyme catabolic process;0.00662207875869848!GO:0030029;actin filament-based process;0.00717431525597969!GO:0019843;rRNA binding;0.00726721460320196!GO:0004843;ubiquitin-specific protease activity;0.00771863247480987!GO:0002440;production of molecular mediator of immune response;0.00776990954591831!GO:0008637;apoptotic mitochondrial changes;0.00784579799818932!GO:0016251;general RNA polymerase II transcription factor activity;0.00786309193100818!GO:0006414;translational elongation;0.0083818631945314!GO:0043621;protein self-association;0.00842101730729793!GO:0006984;ER-nuclear signaling pathway;0.00852685576780468!GO:0051707;response to other organism;0.00852685576780468!GO:0008139;nuclear localization sequence binding;0.00861624468957396!GO:0030867;rough endoplasmic reticulum membrane;0.00861624468957396!GO:0051091;positive regulation of transcription factor activity;0.00869204411698994!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00886205475062642!GO:0030149;sphingolipid catabolic process;0.00890114340076319!GO:0019079;viral genome replication;0.00898670351252363!GO:0006352;transcription initiation;0.00913767707111123!GO:0008624;induction of apoptosis by extracellular signals;0.00943545406890307!GO:0030119;AP-type membrane coat adaptor complex;0.0094480676990476!GO:0050870;positive regulation of T cell activation;0.00952331136524376!GO:0015923;mannosidase activity;0.00956127105784226!GO:0000165;MAPKKK cascade;0.00968738892255504!GO:0004197;cysteine-type endopeptidase activity;0.00970008535779196!GO:0019058;viral infectious cycle;0.00977845913061732!GO:0051098;regulation of binding;0.00977845913061732!GO:0042101;T cell receptor complex;0.0098750168585744!GO:0046467;membrane lipid biosynthetic process;0.0098750168585744!GO:0016584;nucleosome positioning;0.01003998795963!GO:0043407;negative regulation of MAP kinase activity;0.0100916913247838!GO:0003746;translation elongation factor activity;0.0101776856152697!GO:0030218;erythrocyte differentiation;0.0102105442166347!GO:0050851;antigen receptor-mediated signaling pathway;0.0106159282938452!GO:0032386;regulation of intracellular transport;0.0108154558615467!GO:0003690;double-stranded DNA binding;0.0110362442329123!GO:0019883;antigen processing and presentation of endogenous antigen;0.0115296717899178!GO:0019220;regulation of phosphate metabolic process;0.0121902736185875!GO:0051174;regulation of phosphorus metabolic process;0.0121902736185875!GO:0045045;secretory pathway;0.0121902736185875!GO:0030131;clathrin adaptor complex;0.0125455447086772!GO:0015630;microtubule cytoskeleton;0.0126303607857063!GO:0005085;guanyl-nucleotide exchange factor activity;0.0128723909035954!GO:0030125;clathrin vesicle coat;0.0129322997593781!GO:0030665;clathrin coated vesicle membrane;0.0129322997593781!GO:0045792;negative regulation of cell size;0.0129391493287204!GO:0046966;thyroid hormone receptor binding;0.0131020284872571!GO:0004221;ubiquitin thiolesterase activity;0.0132565980597178!GO:0048487;beta-tubulin binding;0.0136931180226608!GO:0019900;kinase binding;0.0137927934442773!GO:0005048;signal sequence binding;0.0144380226949225!GO:0000209;protein polyubiquitination;0.0150520855211515!GO:0002467;germinal center formation;0.0150766196712356!GO:0030127;COPII vesicle coat;0.0156066637094443!GO:0012507;ER to Golgi transport vesicle membrane;0.0156066637094443!GO:0030308;negative regulation of cell growth;0.0157269415778237!GO:0045603;positive regulation of endothelial cell differentiation;0.0159772393650025!GO:0001772;immunological synapse;0.0164446183853316!GO:0046489;phosphoinositide biosynthetic process;0.0171594632547979!GO:0008383;manganese superoxide dismutase activity;0.0171594632547979!GO:0001315;age-dependent response to reactive oxygen species;0.0171594632547979!GO:0045926;negative regulation of growth;0.0171730118505272!GO:0006914;autophagy;0.0172122529662429!GO:0008017;microtubule binding;0.0174786975373618!GO:0030176;integral to endoplasmic reticulum membrane;0.0174786975373618!GO:0046474;glycerophospholipid biosynthetic process;0.0180729853851964!GO:0051051;negative regulation of transport;0.0182598631374703!GO:0043022;ribosome binding;0.0182775669369082!GO:0005905;coated pit;0.0188200425583723!GO:0030098;lymphocyte differentiation;0.018956343484441!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0191217189443126!GO:0002819;regulation of adaptive immune response;0.0191217189443126!GO:0045454;cell redox homeostasis;0.0192229177811222!GO:0051235;maintenance of localization;0.0193928804800658!GO:0006644;phospholipid metabolic process;0.0196204634774449!GO:0000060;protein import into nucleus, translocation;0.0198740481459849!GO:0045058;T cell selection;0.0199267273702481!GO:0030134;ER to Golgi transport vesicle;0.0200543950410266!GO:0006405;RNA export from nucleus;0.0201538129632062!GO:0050871;positive regulation of B cell activation;0.0201581550934354!GO:0009165;nucleotide biosynthetic process;0.0203735026569819!GO:0033549;MAP kinase phosphatase activity;0.020523737082629!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.020523737082629!GO:0019882;antigen processing and presentation;0.0207046748691414!GO:0030041;actin filament polymerization;0.02080286577328!GO:0033367;protein localization in mast cell secretory granule;0.02080286577328!GO:0033365;protein localization in organelle;0.02080286577328!GO:0033371;T cell secretory granule organization and biogenesis;0.02080286577328!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.02080286577328!GO:0033375;protease localization in T cell secretory granule;0.02080286577328!GO:0042629;mast cell granule;0.02080286577328!GO:0033377;maintenance of protein localization in T cell secretory granule;0.02080286577328!GO:0033364;mast cell secretory granule organization and biogenesis;0.02080286577328!GO:0033380;granzyme B localization in T cell secretory granule;0.02080286577328!GO:0033379;maintenance of protease localization in T cell secretory granule;0.02080286577328!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.02080286577328!GO:0033368;protease localization in mast cell secretory granule;0.02080286577328!GO:0033366;protein localization in secretory granule;0.02080286577328!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.02080286577328!GO:0033374;protein localization in T cell secretory granule;0.02080286577328!GO:0008286;insulin receptor signaling pathway;0.0212118144400617!GO:0051049;regulation of transport;0.0214030320178236!GO:0030133;transport vesicle;0.0216425227440925!GO:0005669;transcription factor TFIID complex;0.0218305003194069!GO:0048500;signal recognition particle;0.0219695377946807!GO:0001562;response to protozoan;0.0222029514483987!GO:0016788;hydrolase activity, acting on ester bonds;0.0222569821432716!GO:0004721;phosphoprotein phosphatase activity;0.0229478495894336!GO:0006261;DNA-dependent DNA replication;0.0232182717993473!GO:0046854;phosphoinositide phosphorylation;0.0232319623180267!GO:0030027;lamellipodium;0.0232319623180267!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0232319623180267!GO:0032763;regulation of mast cell cytokine production;0.0232740384604773!GO:0032762;mast cell cytokine production;0.0232740384604773!GO:0004177;aminopeptidase activity;0.0234992944434395!GO:0031098;stress-activated protein kinase signaling pathway;0.0237440276832151!GO:0000188;inactivation of MAPK activity;0.023953441622691!GO:0031072;heat shock protein binding;0.0240537666370261!GO:0005684;U2-dependent spliceosome;0.024807731745958!GO:0006595;polyamine metabolic process;0.0250104152778466!GO:0030518;steroid hormone receptor signaling pathway;0.0251491509292333!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0255366217709988!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0255366217709988!GO:0000287;magnesium ion binding;0.0259313381034739!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0265658768131007!GO:0045113;regulation of integrin biosynthetic process;0.0268316178542423!GO:0045112;integrin biosynthetic process;0.0268316178542423!GO:0050865;regulation of cell activation;0.0270778747996589!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0276806322374493!GO:0017166;vinculin binding;0.0276814635592896!GO:0008333;endosome to lysosome transport;0.0277323009307032!GO:0006338;chromatin remodeling;0.0277614717372176!GO:0005788;endoplasmic reticulum lumen;0.0280351275686245!GO:0006968;cellular defense response;0.0282648419658955!GO:0002218;activation of innate immune response;0.02834544076282!GO:0002758;innate immune response-activating signal transduction;0.02834544076282!GO:0051020;GTPase binding;0.0290129368974427!GO:0006354;RNA elongation;0.0290889122064711!GO:0040029;regulation of gene expression, epigenetic;0.0290889122064711!GO:0006516;glycoprotein catabolic process;0.029383357184868!GO:0048872;homeostasis of number of cells;0.0297030891382942!GO:0006470;protein amino acid dephosphorylation;0.0302341149775651!GO:0006310;DNA recombination;0.0303288310380429!GO:0004702;receptor signaling protein serine/threonine kinase activity;0.0317461233699112!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0318023956235964!GO:0045936;negative regulation of phosphate metabolic process;0.0321691981286643!GO:0005791;rough endoplasmic reticulum;0.0321800206498095!GO:0008629;induction of apoptosis by intracellular signals;0.0323929690079736!GO:0006376;mRNA splice site selection;0.033016202068705!GO:0000389;nuclear mRNA 3'-splice site recognition;0.033016202068705!GO:0003702;RNA polymerase II transcription factor activity;0.0331435212605787!GO:0050811;GABA receptor binding;0.033204031938699!GO:0005484;SNAP receptor activity;0.0341102873424495!GO:0046834;lipid phosphorylation;0.0342937807501986!GO:0006954;inflammatory response;0.0342937807501986!GO:0005869;dynactin complex;0.0344550982168795!GO:0006661;phosphatidylinositol biosynthetic process;0.0345571500353861!GO:0002718;regulation of cytokine production during immune response;0.0347165782253823!GO:0002367;cytokine production during immune response;0.0347165782253823!GO:0002700;regulation of production of molecular mediator of immune response;0.0347165782253823!GO:0016605;PML body;0.0350184679628021!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0350184679628021!GO:0050900;leukocyte migration;0.0351642117758478!GO:0002252;immune effector process;0.0354130494469395!GO:0008276;protein methyltransferase activity;0.0356048760592615!GO:0006458;'de novo' protein folding;0.035816725198171!GO:0051084;'de novo' posttranslational protein folding;0.035816725198171!GO:0048002;antigen processing and presentation of peptide antigen;0.0362751493661456!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0371401570063998!GO:0045047;protein targeting to ER;0.0371401570063998!GO:0045947;negative regulation of translational initiation;0.0375690628527548!GO:0045089;positive regulation of innate immune response;0.0376176073311728!GO:0045088;regulation of innate immune response;0.0376176073311728!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0379418396877148!GO:0006383;transcription from RNA polymerase III promoter;0.0380383334382667!GO:0016279;protein-lysine N-methyltransferase activity;0.0381619551363709!GO:0018024;histone-lysine N-methyltransferase activity;0.0381619551363709!GO:0016278;lysine N-methyltransferase activity;0.0381619551363709!GO:0016585;chromatin remodeling complex;0.0386904800688018!GO:0051249;regulation of lymphocyte activation;0.0387625121676565!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0390033328725698!GO:0001836;release of cytochrome c from mitochondria;0.0390628110094908!GO:0046426;negative regulation of JAK-STAT cascade;0.0390628110094908!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0390628110094908!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0390628110094908!GO:0009126;purine nucleoside monophosphate metabolic process;0.0390628110094908!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0390628110094908!GO:0030968;unfolded protein response;0.0391303597243743!GO:0001516;prostaglandin biosynthetic process;0.03950818810738!GO:0046457;prostanoid biosynthetic process;0.03950818810738!GO:0002224;toll-like receptor signaling pathway;0.03950818810738!GO:0002221;pattern recognition receptor signaling pathway;0.03950818810738!GO:0004563;beta-N-acetylhexosaminidase activity;0.0395625584092288!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0404470030909538!GO:0006367;transcription initiation from RNA polymerase II promoter;0.040894289298859!GO:0007254;JNK cascade;0.040894289298859!GO:0016505;apoptotic protease activator activity;0.0420605582093577!GO:0006013;mannose metabolic process;0.0423292476536826!GO:0000303;response to superoxide;0.0423292476536826!GO:0005097;Rab GTPase activator activity;0.0428316406473045!GO:0032760;positive regulation of tumor necrosis factor production;0.0431871280685235!GO:0042326;negative regulation of phosphorylation;0.0439676487247013!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0440805421213729!GO:0031267;small GTPase binding;0.044371053880517!GO:0007266;Rho protein signal transduction;0.0453098981977742!GO:0008361;regulation of cell size;0.0453236464340179!GO:0005762;mitochondrial large ribosomal subunit;0.0453236464340179!GO:0000315;organellar large ribosomal subunit;0.0453236464340179!GO:0046979;TAP2 binding;0.0453982291399131!GO:0046977;TAP binding;0.0453982291399131!GO:0046978;TAP1 binding;0.0453982291399131!GO:0007162;negative regulation of cell adhesion;0.0456378980907878!GO:0006740;NADPH regeneration;0.0456378980907878!GO:0006098;pentose-phosphate shunt;0.0456378980907878!GO:0043300;regulation of leukocyte degranulation;0.0456722800163227!GO:0009299;mRNA transcription;0.0458299387512459!GO:0001776;leukocyte homeostasis;0.0459143637970565!GO:0016566;specific transcriptional repressor activity;0.04619409798754!GO:0006509;membrane protein ectodomain proteolysis;0.0465541648119383!GO:0033619;membrane protein proteolysis;0.0465541648119383!GO:0008312;7S RNA binding;0.0467486330848086!GO:0015980;energy derivation by oxidation of organic compounds;0.0475791193311308!GO:0030433;ER-associated protein catabolic process;0.0479034450651739!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0479034450651739!GO:0048146;positive regulation of fibroblast proliferation;0.0481079193083275!GO:0033239;negative regulation of amine metabolic process;0.0481885309592602!GO:0045763;negative regulation of amino acid metabolic process;0.0481885309592602!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0481885309592602!GO:0019377;glycolipid catabolic process;0.0486876039674375 | |||
|sample_id=11381 | |sample_id=11381 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 105: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=NFKB1_REL_RELA:5.00802147952;PAX2:4.4861226971;BACH2:4.27306071447;FOS_FOS{B,L1}_JUN{B,D}:4.1430396822;PAX3,7:3.94975488562;NFE2:3.9392172028;FOSL2:3.90617560687;NFIL3:3.79421002968;RUNX1..3:3.46741080413;CREB1:3.46429516924;ATF4:3.35774922684;ATF5_CREB3:3.32794077528;SPI1:3.32142615636;SPIB:3.31159287073;ETS1,2:3.23586834716;CEBPA,B_DDIT3:3.03235167326;HLF:2.71615811824;TGIF1:2.51531036824;FOXN1:2.42742956798;IRF1,2:2.41044495208;BPTF:2.3592727711;DMAP1_NCOR{1,2}_SMARC:2.34115634169;FOXP3:2.3020788055;NFE2L2:2.25954493146;RFX2..5_RFXANK_RFXAP:2.24999831405;FOXO1,3,4:2.23211009395;JUN:2.17569506681;RXRA_VDR{dimer}:2.17022133692;NFATC1..3:2.06249947075;HMGA1,2:1.82144204597;STAT2,4,6:1.80374572756;MAFB:1.80178159982;FOX{D1,D2}:1.6490204017;NANOG{mouse}:1.64730988212;IRF7:1.64227427173;ELF1,2,4:1.63276860893;SREBF1,2:1.50273418884;ATF2:1.4326074263;PITX1..3:1.41667605514;HIF1A:1.37537442088;NKX2-1,4:1.36583783651;FOXP1:1.28641172443;ATF6:1.26529978871;EP300:1.23026025191;RORA:1.14074947038;NFE2L1:0.909048976466;HMX1:0.895428601837;PAX8:0.848996440751;ZBTB16:0.79439496071;T:0.768636595279;RBPJ:0.686425249518;HOX{A5,B5}:0.469873855507;XBP1:0.42799004563;PDX1:0.421757271181;PPARG:0.408079419563;EGR1..3:0.377848160722;FOX{F1,F2,J1}:0.320610681286;RFX1:0.316531664248;HBP1_HMGB_SSRP1_UBTF:0.298650624979;HSF1,2:0.235705116895;BREu{core}:0.229462590611;FOXL1:0.113529489437;ZNF384:0.100963529996;GATA4:0.0935554743208;NANOG:0.00252008672664;HOXA9_MEIS1:-0.00600396520218;SOX2:-0.0412321270406;GLI1..3:-0.0471170577424;TOPORS:-0.138364539569;MEF2{A,B,C,D}:-0.15108257336;RXR{A,B,G}:-0.154000919996;TBX4,5:-0.190683258686;POU2F1..3:-0.203543216205;ALX4:-0.271735750168;NKX6-1,2:-0.306033540261;AHR_ARNT_ARNT2:-0.380871675029;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.389617948421;TFAP2{A,C}:-0.401793923104;TLX2:-0.406900853607;SRF:-0.418276282906;TFCP2:-0.428090257133;IKZF2:-0.454885353308;SMAD1..7,9:-0.464985970415;NKX3-1:-0.488490071409;TFDP1:-0.490335809669;MTE{core}:-0.575070199131;POU5F1:-0.589139455544;CDX1,2,4:-0.591942363248;TFAP2B:-0.60826851424;ESR1:-0.610276751377;NR1H4:-0.618644996623;FOXD3:-0.644550802013;IKZF1:-0.690522637427;MED-1{core}:-0.758154436771;ESRRA:-0.7582796701;ZFP161:-0.806126933847;SP1:-0.81869739253;MYB:-0.885919694247;MZF1:-0.893911328333;EN1,2:-0.926017933152;MYFfamily:-1.00685058973;FOXM1:-1.01676970505;DBP:-1.0424334402;NHLH1,2:-1.05250346543;PATZ1:-1.08189333295;TFAP4:-1.11272928796;STAT1,3:-1.11736695767;E2F1..5:-1.17227770309;RREB1:-1.17610253058;OCT4_SOX2{dimer}:-1.18388593344;HNF4A_NR2F1,2:-1.20255908598;TAL1_TCF{3,4,12}:-1.20774660453;PRDM1:-1.20923179719;GATA6:-1.2492958733;TBP:-1.25528767428;NR5A1,2:-1.25670903893;PRRX1,2:-1.28980464517;PAX6:-1.28986152151;ZNF238:-1.29319771682;REST:-1.30567442775;SOX5:-1.31381512961;HES1:-1.3303326204;STAT5{A,B}:-1.34593498784;MTF1:-1.34964138785;HIC1:-1.36347528114;CRX:-1.40175940664;VSX1,2:-1.43807741081;HNF1A:-1.43914534828;FOX{I1,J2}:-1.44305281337;FOXA2:-1.48005875384;MAZ:-1.50211827825;PAX4:-1.5112449331;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.51198257288;ZEB1:-1.56935851082;XCPE1{core}:-1.58609566489;SOX{8,9,10}:-1.60901109098;GCM1,2:-1.61117257124;CUX2:-1.6116304158;TEF:-1.62876395705;NR6A1:-1.64271123304;PAX5:-1.65205070481;NFY{A,B,C}:-1.68015640477;NR3C1:-1.70302842661;EBF1:-1.70455173702;SPZ1:-1.72625709611;FOXQ1:-1.73145055142;MYOD1:-1.75726950156;TP53:-1.87777888427;ZNF423:-1.87926435831;ZNF148:-1.88351192497;ELK1,4_GABP{A,B1}:-1.89030586356;MYBL2:-1.91925794804;PAX1,9:-1.96078302943;GTF2A1,2:-1.96257070335;LEF1_TCF7_TCF7L1,2:-1.9663449296;TEAD1:-2.0071077492;GTF2I:-2.01864353994;SNAI1..3:-2.08252673702;PBX1:-2.08566769609;ZBTB6:-2.13957611018;HOX{A6,A7,B6,B7}:-2.14182936062;NKX2-3_NKX2-5:-2.17094333178;POU3F1..4:-2.17095732719;GZF1:-2.20873783247;NRF1:-2.20902465351;AIRE:-2.2759528519;TLX1..3_NFIC{dimer}:-2.27810824546;POU6F1:-2.29351158951;NKX2-2,8:-2.31800837714;ZIC1..3:-2.31937325611;bHLH_family:-2.33597817142;ADNP_IRX_SIX_ZHX:-2.48685767208;LMO2:-2.51087056713;ONECUT1,2:-2.53974202927;HOX{A4,D4}:-2.54083222629;GFI1:-2.56581279225;CDC5L:-2.62264501235;SOX17:-2.70272897314;ARID5B:-2.71452983707;AR:-2.77708866257;KLF4:-2.79042110835;ALX1:-2.82869684763;GFI1B:-2.86831282587;LHX3,4:-2.95459596462;UFEwm:-2.96737089903;ZNF143:-3.05170610125;NFIX:-3.06675089241;EVI1:-3.12781193244;POU1F1:-3.26740627784;YY1:-3.50977618688;NKX3-2:-3.65660500048;HAND1,2:-4.44500643882 | |top_motifs=NFKB1_REL_RELA:5.00802147952;PAX2:4.4861226971;BACH2:4.27306071447;FOS_FOS{B,L1}_JUN{B,D}:4.1430396822;PAX3,7:3.94975488562;NFE2:3.9392172028;FOSL2:3.90617560687;NFIL3:3.79421002968;RUNX1..3:3.46741080413;CREB1:3.46429516924;ATF4:3.35774922684;ATF5_CREB3:3.32794077528;SPI1:3.32142615636;SPIB:3.31159287073;ETS1,2:3.23586834716;CEBPA,B_DDIT3:3.03235167326;HLF:2.71615811824;TGIF1:2.51531036824;FOXN1:2.42742956798;IRF1,2:2.41044495208;BPTF:2.3592727711;DMAP1_NCOR{1,2}_SMARC:2.34115634169;FOXP3:2.3020788055;NFE2L2:2.25954493146;RFX2..5_RFXANK_RFXAP:2.24999831405;FOXO1,3,4:2.23211009395;JUN:2.17569506681;RXRA_VDR{dimer}:2.17022133692;NFATC1..3:2.06249947075;HMGA1,2:1.82144204597;STAT2,4,6:1.80374572756;MAFB:1.80178159982;FOX{D1,D2}:1.6490204017;NANOG{mouse}:1.64730988212;IRF7:1.64227427173;ELF1,2,4:1.63276860893;SREBF1,2:1.50273418884;ATF2:1.4326074263;PITX1..3:1.41667605514;HIF1A:1.37537442088;NKX2-1,4:1.36583783651;FOXP1:1.28641172443;ATF6:1.26529978871;EP300:1.23026025191;RORA:1.14074947038;NFE2L1:0.909048976466;HMX1:0.895428601837;PAX8:0.848996440751;ZBTB16:0.79439496071;T:0.768636595279;RBPJ:0.686425249518;HOX{A5,B5}:0.469873855507;XBP1:0.42799004563;PDX1:0.421757271181;PPARG:0.408079419563;EGR1..3:0.377848160722;FOX{F1,F2,J1}:0.320610681286;RFX1:0.316531664248;HBP1_HMGB_SSRP1_UBTF:0.298650624979;HSF1,2:0.235705116895;BREu{core}:0.229462590611;FOXL1:0.113529489437;ZNF384:0.100963529996;GATA4:0.0935554743208;NANOG:0.00252008672664;HOXA9_MEIS1:-0.00600396520218;SOX2:-0.0412321270406;GLI1..3:-0.0471170577424;TOPORS:-0.138364539569;MEF2{A,B,C,D}:-0.15108257336;RXR{A,B,G}:-0.154000919996;TBX4,5:-0.190683258686;POU2F1..3:-0.203543216205;ALX4:-0.271735750168;NKX6-1,2:-0.306033540261;AHR_ARNT_ARNT2:-0.380871675029;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.389617948421;TFAP2{A,C}:-0.401793923104;TLX2:-0.406900853607;SRF:-0.418276282906;TFCP2:-0.428090257133;IKZF2:-0.454885353308;SMAD1..7,9:-0.464985970415;NKX3-1:-0.488490071409;TFDP1:-0.490335809669;MTE{core}:-0.575070199131;POU5F1:-0.589139455544;CDX1,2,4:-0.591942363248;TFAP2B:-0.60826851424;ESR1:-0.610276751377;NR1H4:-0.618644996623;FOXD3:-0.644550802013;IKZF1:-0.690522637427;MED-1{core}:-0.758154436771;ESRRA:-0.7582796701;ZFP161:-0.806126933847;SP1:-0.81869739253;MYB:-0.885919694247;MZF1:-0.893911328333;EN1,2:-0.926017933152;MYFfamily:-1.00685058973;FOXM1:-1.01676970505;DBP:-1.0424334402;NHLH1,2:-1.05250346543;PATZ1:-1.08189333295;TFAP4:-1.11272928796;STAT1,3:-1.11736695767;E2F1..5:-1.17227770309;RREB1:-1.17610253058;OCT4_SOX2{dimer}:-1.18388593344;HNF4A_NR2F1,2:-1.20255908598;TAL1_TCF{3,4,12}:-1.20774660453;PRDM1:-1.20923179719;GATA6:-1.2492958733;TBP:-1.25528767428;NR5A1,2:-1.25670903893;PRRX1,2:-1.28980464517;PAX6:-1.28986152151;ZNF238:-1.29319771682;REST:-1.30567442775;SOX5:-1.31381512961;HES1:-1.3303326204;STAT5{A,B}:-1.34593498784;MTF1:-1.34964138785;HIC1:-1.36347528114;CRX:-1.40175940664;VSX1,2:-1.43807741081;HNF1A:-1.43914534828;FOX{I1,J2}:-1.44305281337;FOXA2:-1.48005875384;MAZ:-1.50211827825;PAX4:-1.5112449331;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.51198257288;ZEB1:-1.56935851082;XCPE1{core}:-1.58609566489;SOX{8,9,10}:-1.60901109098;GCM1,2:-1.61117257124;CUX2:-1.6116304158;TEF:-1.62876395705;NR6A1:-1.64271123304;PAX5:-1.65205070481;NFY{A,B,C}:-1.68015640477;NR3C1:-1.70302842661;EBF1:-1.70455173702;SPZ1:-1.72625709611;FOXQ1:-1.73145055142;MYOD1:-1.75726950156;TP53:-1.87777888427;ZNF423:-1.87926435831;ZNF148:-1.88351192497;ELK1,4_GABP{A,B1}:-1.89030586356;MYBL2:-1.91925794804;PAX1,9:-1.96078302943;GTF2A1,2:-1.96257070335;LEF1_TCF7_TCF7L1,2:-1.9663449296;TEAD1:-2.0071077492;GTF2I:-2.01864353994;SNAI1..3:-2.08252673702;PBX1:-2.08566769609;ZBTB6:-2.13957611018;HOX{A6,A7,B6,B7}:-2.14182936062;NKX2-3_NKX2-5:-2.17094333178;POU3F1..4:-2.17095732719;GZF1:-2.20873783247;NRF1:-2.20902465351;AIRE:-2.2759528519;TLX1..3_NFIC{dimer}:-2.27810824546;POU6F1:-2.29351158951;NKX2-2,8:-2.31800837714;ZIC1..3:-2.31937325611;bHLH_family:-2.33597817142;ADNP_IRX_SIX_ZHX:-2.48685767208;LMO2:-2.51087056713;ONECUT1,2:-2.53974202927;HOX{A4,D4}:-2.54083222629;GFI1:-2.56581279225;CDC5L:-2.62264501235;SOX17:-2.70272897314;ARID5B:-2.71452983707;AR:-2.77708866257;KLF4:-2.79042110835;ALX1:-2.82869684763;GFI1B:-2.86831282587;LHX3,4:-2.95459596462;UFEwm:-2.96737089903;ZNF143:-3.05170610125;NFIX:-3.06675089241;EVI1:-3.12781193244;POU1F1:-3.26740627784;YY1:-3.50977618688;NKX3-2:-3.65660500048;HAND1,2:-4.44500643882 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11381-118B4;search_select_hide=table117:FF:11381-118B4 | |||
}} | }} |
Latest revision as of 17:56, 4 June 2020
Name: | CD14+ Monocytes, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11997 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11997
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11997
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.384 |
10 | 10 | 0.0124 |
100 | 100 | 0.844 |
101 | 101 | 0.772 |
102 | 102 | 0.931 |
103 | 103 | 0.772 |
104 | 104 | 0.456 |
105 | 105 | 0.0884 |
106 | 106 | 8.38751e-4 |
107 | 107 | 0.483 |
108 | 108 | 0.505 |
109 | 109 | 0.419 |
11 | 11 | 0.443 |
110 | 110 | 0.486 |
111 | 111 | 0.0817 |
112 | 112 | 0.708 |
113 | 113 | 0.132 |
114 | 114 | 0.217 |
115 | 115 | 0.129 |
116 | 116 | 0.671 |
117 | 117 | 0.0314 |
118 | 118 | 0.147 |
119 | 119 | 0.581 |
12 | 12 | 0.183 |
120 | 120 | 0.271 |
121 | 121 | 0.558 |
122 | 122 | 0.6 |
123 | 123 | 0.00532 |
124 | 124 | 0.614 |
125 | 125 | 0.288 |
126 | 126 | 0.268 |
127 | 127 | 0.832 |
128 | 128 | 0.0866 |
129 | 129 | 0.888 |
13 | 13 | 0.133 |
130 | 130 | 0.213 |
131 | 131 | 0.81 |
132 | 132 | 0.0702 |
133 | 133 | 0.61 |
134 | 134 | 0.847 |
135 | 135 | 0.967 |
136 | 136 | 0.968 |
137 | 137 | 0.0054 |
138 | 138 | 0.27 |
139 | 139 | 0.0929 |
14 | 14 | 0.337 |
140 | 140 | 0.396 |
141 | 141 | 0.432 |
142 | 142 | 0.243 |
143 | 143 | 0.0416 |
144 | 144 | 0.61 |
145 | 145 | 0.508 |
146 | 146 | 0.75 |
147 | 147 | 0.442 |
148 | 148 | 0.0578 |
149 | 149 | 0.556 |
15 | 15 | 0.187 |
150 | 150 | 0.676 |
151 | 151 | 0.183 |
152 | 152 | 0.209 |
153 | 153 | 0.787 |
154 | 154 | 0.403 |
155 | 155 | 0.527 |
156 | 156 | 0.725 |
157 | 157 | 0.638 |
158 | 158 | 0.0225 |
159 | 159 | 0.268 |
16 | 16 | 0.922 |
160 | 160 | 0.938 |
161 | 161 | 0.751 |
162 | 162 | 0.112 |
163 | 163 | 0.155 |
164 | 164 | 0.0538 |
165 | 165 | 0.36 |
166 | 166 | 0.558 |
167 | 167 | 0.183 |
168 | 168 | 0.154 |
169 | 169 | 0.0818 |
17 | 17 | 0.448 |
18 | 18 | 0.316 |
19 | 19 | 0.936 |
2 | 2 | 0.23 |
20 | 20 | 0.191 |
21 | 21 | 0.927 |
22 | 22 | 0.475 |
23 | 23 | 0.0953 |
24 | 24 | 0.756 |
25 | 25 | 0.322 |
26 | 26 | 0.136 |
27 | 27 | 0.382 |
28 | 28 | 0.367 |
29 | 29 | 0.222 |
3 | 3 | 0.309 |
30 | 30 | 0.197 |
31 | 31 | 0.887 |
32 | 32 | 0.0819 |
33 | 33 | 0.27 |
34 | 34 | 0.695 |
35 | 35 | 0.146 |
36 | 36 | 0.075 |
37 | 37 | 0.147 |
38 | 38 | 0.534 |
39 | 39 | 0.87 |
4 | 4 | 0.72 |
40 | 40 | 0.201 |
41 | 41 | 0.00661 |
42 | 42 | 0.494 |
43 | 43 | 0.0353 |
44 | 44 | 0.313 |
45 | 45 | 0.88 |
46 | 46 | 0.484 |
47 | 47 | 0.954 |
48 | 48 | 0.85 |
49 | 49 | 0.0855 |
5 | 5 | 0.284 |
50 | 50 | 0.859 |
51 | 51 | 0.588 |
52 | 52 | 0.482 |
53 | 53 | 0.21 |
54 | 54 | 0.651 |
55 | 55 | 0.955 |
56 | 56 | 0.976 |
57 | 57 | 0.981 |
58 | 58 | 0.227 |
59 | 59 | 0.51 |
6 | 6 | 0.962 |
60 | 60 | 0.091 |
61 | 61 | 0.488 |
62 | 62 | 0.183 |
63 | 63 | 0.802 |
64 | 64 | 0.583 |
65 | 65 | 0.35 |
66 | 66 | 0.0423 |
67 | 67 | 0.651 |
68 | 68 | 0.281 |
69 | 69 | 0.304 |
7 | 7 | 0.288 |
70 | 70 | 0.0898 |
71 | 71 | 0.0457 |
72 | 72 | 0.238 |
73 | 73 | 0.142 |
74 | 74 | 0.0678 |
75 | 75 | 0.159 |
76 | 76 | 0.0445 |
77 | 77 | 0.923 |
78 | 78 | 0.375 |
79 | 79 | 0.79 |
8 | 8 | 0.953 |
80 | 80 | 0.115 |
81 | 81 | 0.425 |
82 | 82 | 0.402 |
83 | 83 | 0.335 |
84 | 84 | 0.0415 |
85 | 85 | 0.103 |
86 | 86 | 0.0276 |
87 | 87 | 0.762 |
88 | 88 | 0.785 |
89 | 89 | 0.756 |
9 | 9 | 0.475 |
90 | 90 | 0.28 |
91 | 91 | 0.384 |
92 | 92 | 0.587 |
93 | 93 | 0.692 |
94 | 94 | 0.103 |
95 | 95 | 0.228 |
96 | 96 | 0.593 |
97 | 97 | 0.722 |
98 | 98 | 0.13 |
99 | 99 | 0.00241 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11997
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000024 (human CD14-positive monocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)