FF:12142-128E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005561 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008078;DRR008950;DRZ000375;DRZ001760;DRZ011725;DRZ013110 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0001708,UBERON:0011159,UBERON:0002204,UBERON:0001434,UBERON:0008895,UBERON:0011137,UBERON:0010323 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002159,CL:0000255,CL:0002077,CL:0002166 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000087 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12142-128E9 | |id=FF:12142-128E9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000087 | ||
|is_obsolete= | |||
|library_id=CNhs12538 | |||
|library_id_phase_based=2:CNhs12538 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12142 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12142 | |||
|name=Mallassez-derived cells, donor1 (MZH3) | |name=Mallassez-derived cells, donor1 (MZH3) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12538,LSID920,release012,COMPLETED | |profile_hcage=CNhs12538,LSID920,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.143602736613037,0,0,-0.160318030086386,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0.75485968386931,0,1.05349031819397,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,1.05349031819397,0,-0.174425742109917,0,0,0,1.05349031819397,0,0,0,0,0.119387715500203,0,0,0,0,0,-0.0382700056703111,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.203236562094724,0,0,0,0,0,0,-0.161194318099204,0,0,0,-0.0569510154803932,-0.067594666082831,0,0,0,0,0.189170121988369,0.0051255358121425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.194931483635338,-0.203309002532207,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.189170121988369,0,0,0,0,0,0,0,0,0,0,0,0.0400265979405109,0,-0.474086218752008,-0.143515142523472,0,0,-0.427279086909571,0,0,0,0,0,0,0,0,0,0.453034736167446,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.163939368838719,0,-0.120879483793741,-0.0827201683234173,0,0.727190785804132,-0.055712496781182,0,0,0,0.59235379593894,0.159448224114081,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,0.433512601060097,-0.0604397418968705,0,-0.162458694256258,0,0,0,0,0,0,0,0,0,0,0,0.086109269791601,-0.326988596678969,0,0,0,-0.0509461448654274,0.0624476482169556,0,0,-0.373286155956567,-0.268710359710138,-0.133206887634127,-0.636989707420725,0,-0.302389727009913,-0.222854340141438,-0.224176733725203,-0.0569510154803932,-0.147401849371139,0.268607286309582,0,-0.307387206238593,-0.786272629114012,0,0.0217061498436244,-0.244423881238175,-0.143341200317724,-0.0601242119232992,0,0,0,0.41268335026954,0,-0.00801766379431479,-0.490114714476774,-0.204458581382871,-0.206311015239752,0.070888290131847,0.0237312147543862,-0.408957479805072,-0.0395325284566706,-0.457436452896595,0,-0.130995023343695,0,0,0,-0.115955018199803,0.18887789894534,-0.0346715700586686,0,-0.0253884559515516,-0.0683442610773682,0,-0.09474622964378,-0.226130217091,0,0,-0.578777230871412,0,0,0,0,0,-0.0425474403601431,0.137142339956646,-0.232855561555545,0,-0.164695137943534,0,0.246747573632104,0,-0.262790070278115,0.141195575768681,0,-0.292633804596236,0,0.0502091506836265,-0.0200273859613013,-0.164990696339003,-0.135189332165662,-0.0584468268118252,-0.271882927916302,-0.42117517852425,-0.0455436578762776,-0.0340801809209167,-0.124307696593413,-0.0881268324752877,0,-0.12868506664907,0.19910226516336,-0.097821138503669,-0.439927167616534,0,-0.16302850614948,0,-0.718423291266097,0,-0.592760657440795,-0.081844745613811,-0.439289374580686,-0.0111633014099444,0,-0.167955195105244,0.676062672878707,0,-0.135723143846782,-0.116481152995786,0.58115460312001,0.30822192252479,-0.239106960653154,-0.0680476912515514,0.319599549180234,0,0.0310421348666501,0,0,-0.056349549375529,0.0517294354616867,0,-0.225896912853508,-0.609202914213396,-0.604216041195295,0.171234399791141,0,0.037244465884672,0.0309341449940873,0,0,0.409992365832368,0.00544771528738852,-0.161194318099204,-0.253326341486756,-0.00202700302011327,0.120671693475459,0,0,0.1096777072609,0,-0.0360469450822797,0,0,0.127548545335831,0,0,0,0,-0.195265690557764,0,-0.0589565109853561,0,0,0,0,0,-0.379670352103346,-0.0676278569903726,0,0,0,0,0,0,0,0.110683864265593,0,0,0.90209695300218,-0.0968332978427447,0.164188057549655,0,0,0,0,0.365431200566536,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.52308379245695,0,0,0,0.010251071624285,0,0,0,0,-0.144652772199515,0,0,-0.334493203916738,0,-0.394170267126291,-0.0815818795468414,0,0.0264116195744124,0.129059076045709,0.468909416321528,0,0.287205473226075,-0.261347131789888,0,0,-0.157343924848363,0,0,-0.0209247759461169,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.149252661318758,-0.0922240566585104,0.116350805099796,0,0,0,0,0,0,0.263099450147172,-0.24507377173961,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163886387190628,-0.846550337571966,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.90203605594142,0.287205473226075,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0.287205473226075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229294502929715,0,0,0,-0.206924342419014,0,-0.286923624433354,-0.123202864573785,0,0,0.105688888860364,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0.287205473226075,0,-0.0920328098005262,0,0,0,0,0,0,0.0894530012779455,0.0942094421115075,-0.127613019628766,0,0,0,0.0892171641305825,0,0,-0.025272681125321,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.287205473226075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,1.05349031819397,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.458589005859429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.174425742109917,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,1.05349031819397,0.238775431000407,0,0,0,0,0,0,0,0,1.31563673662275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.211605608631581,-0.203309002532207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.125429573177684,0,0,0,0,0,0,0,0,0,0,1.05349031819397,0,0,0,0,0,0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| |||
|rna_box=128 | |rna_box=128 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 54: | Line 76: | ||
|rna_rin=10 | |rna_rin=10 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.28E+11 | ||
|rna_weight_ug=0.56 | |rna_weight_ug=0.56 | ||
|sample_age=22 years old adult | |sample_age=22 years old adult | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0005737;cytoplasm;1.75189555477271e-218!GO:0044424;intracellular part;8.81968871902592e-205!GO:0044444;cytoplasmic part;3.73051538101276e-156!GO:0043226;organelle;2.35396908303398e-146!GO:0043229;intracellular organelle;9.79088509178194e-146!GO:0044422;organelle part;2.52201066054041e-136!GO:0044446;intracellular organelle part;5.08977100212605e-135!GO:0043231;intracellular membrane-bound organelle;1.94063637148744e-131!GO:0043227;membrane-bound organelle;2.52764908834549e-131!GO:0032991;macromolecular complex;5.78044415331336e-96!GO:0030529;ribonucleoprotein complex;5.59114075586281e-89!GO:0005739;mitochondrion;4.17275394722474e-83!GO:0005515;protein binding;2.04568966919819e-69!GO:0044237;cellular metabolic process;1.46952180484291e-63!GO:0044238;primary metabolic process;4.39610917249253e-62!GO:0043233;organelle lumen;2.39963888439393e-61!GO:0031974;membrane-enclosed lumen;2.39963888439393e-61!GO:0005840;ribosome;8.69568565463209e-60!GO:0003723;RNA binding;2.20298513722593e-57!GO:0019538;protein metabolic process;5.28398056857339e-57!GO:0031090;organelle membrane;6.81278788426822e-57!GO:0006412;translation;2.02220648734934e-56!GO:0044429;mitochondrial part;1.58241009507335e-54!GO:0009058;biosynthetic process;1.03782528751365e-53!GO:0003735;structural constituent of ribosome;1.4516291436884e-53!GO:0043170;macromolecule metabolic process;3.27536744758106e-51!GO:0044267;cellular protein metabolic process;1.36727824179133e-49!GO:0044260;cellular macromolecule metabolic process;1.96170683420801e-49!GO:0044428;nuclear part;1.2781762934263e-48!GO:0044249;cellular biosynthetic process;1.49361601459874e-48!GO:0005829;cytosol;4.12795655941167e-48!GO:0043234;protein complex;1.76515324000761e-47!GO:0009059;macromolecule biosynthetic process;5.70686459463499e-46!GO:0015031;protein transport;7.66000964051068e-46!GO:0033036;macromolecule localization;1.40271433487206e-45!GO:0033279;ribosomal subunit;2.93884994941042e-45!GO:0045184;establishment of protein localization;2.60395710941459e-43!GO:0008104;protein localization;5.73442887044872e-43!GO:0006396;RNA processing;8.80480200041498e-42!GO:0031967;organelle envelope;1.76132370061316e-41!GO:0016043;cellular component organization and biogenesis;2.55160159277248e-41!GO:0031975;envelope;3.994082381662e-41!GO:0005740;mitochondrial envelope;2.67802181622102e-35!GO:0046907;intracellular transport;5.13329805754232e-35!GO:0043228;non-membrane-bound organelle;1.19380651009704e-34!GO:0043232;intracellular non-membrane-bound organelle;1.19380651009704e-34!GO:0031966;mitochondrial membrane;3.50422722855956e-33!GO:0065003;macromolecular complex assembly;5.33926606141469e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.3545638317853e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.57598066681764e-31!GO:0019866;organelle inner membrane;9.08159768353316e-31!GO:0016071;mRNA metabolic process;2.01809744508869e-30!GO:0031981;nuclear lumen;2.86889185478716e-30!GO:0005743;mitochondrial inner membrane;5.91202746947346e-30!GO:0006886;intracellular protein transport;6.47698984285935e-29!GO:0008380;RNA splicing;8.60864167232657e-29!GO:0005634;nucleus;4.98372592779156e-28!GO:0022607;cellular component assembly;8.10744796736636e-28!GO:0044445;cytosolic part;2.53830881966685e-27!GO:0006397;mRNA processing;3.26884569934544e-26!GO:0006119;oxidative phosphorylation;1.80511010656639e-24!GO:0015935;small ribosomal subunit;7.26793751596338e-24!GO:0051649;establishment of cellular localization;1.76661438895125e-23!GO:0051641;cellular localization;2.3186138220227e-23!GO:0031980;mitochondrial lumen;5.61932250106937e-23!GO:0005759;mitochondrial matrix;5.61932250106937e-23!GO:0006996;organelle organization and biogenesis;6.12058069039951e-23!GO:0044455;mitochondrial membrane part;1.61785627603238e-22!GO:0005783;endoplasmic reticulum;1.69816639660523e-22!GO:0015934;large ribosomal subunit;1.82635941552609e-22!GO:0012505;endomembrane system;7.67569554490714e-22!GO:0051186;cofactor metabolic process;2.4113355091695e-21!GO:0006457;protein folding;2.78033755056581e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.64035513730234e-21!GO:0016462;pyrophosphatase activity;6.38866179244007e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;7.75495879877389e-21!GO:0005681;spliceosome;1.33834740442733e-20!GO:0017111;nucleoside-triphosphatase activity;1.16662433274633e-19!GO:0005761;mitochondrial ribosome;1.47869858860478e-18!GO:0000313;organellar ribosome;1.47869858860478e-18!GO:0022618;protein-RNA complex assembly;1.88386518740318e-18!GO:0048770;pigment granule;2.03187641965846e-18!GO:0042470;melanosome;2.03187641965846e-18!GO:0005746;mitochondrial respiratory chain;2.1992145324949e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.43216881420112e-18!GO:0044432;endoplasmic reticulum part;6.94650155408601e-18!GO:0043285;biopolymer catabolic process;7.49309514155617e-18!GO:0009057;macromolecule catabolic process;1.41695785886021e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.56114822531372e-17!GO:0016874;ligase activity;1.56114822531372e-17!GO:0043283;biopolymer metabolic process;2.74150054338738e-17!GO:0006732;coenzyme metabolic process;2.87957198787993e-17!GO:0044248;cellular catabolic process;3.11537442530121e-17!GO:0005730;nucleolus;5.38134890924899e-17!GO:0044265;cellular macromolecule catabolic process;1.1871289036228e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.53817017557716e-16!GO:0003954;NADH dehydrogenase activity;1.53817017557716e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.53817017557716e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.56829510276845e-16!GO:0005794;Golgi apparatus;2.48096447125802e-16!GO:0005654;nucleoplasm;6.16798874577498e-16!GO:0012501;programmed cell death;9.11090812665087e-16!GO:0006512;ubiquitin cycle;9.61719281962435e-16!GO:0030163;protein catabolic process;1.03819047955843e-15!GO:0006915;apoptosis;1.59263957656288e-15!GO:0010467;gene expression;2.6013024896292e-15!GO:0000166;nucleotide binding;2.6279819012895e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.39642672578302e-15!GO:0051082;unfolded protein binding;3.86525575806772e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.12345279571836e-15!GO:0019941;modification-dependent protein catabolic process;6.73240944411158e-15!GO:0043632;modification-dependent macromolecule catabolic process;6.73240944411158e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.22669783893355e-15!GO:0044257;cellular protein catabolic process;1.05612207047771e-14!GO:0006605;protein targeting;1.16331116495598e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.23551604896252e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.56123399871852e-14!GO:0045271;respiratory chain complex I;1.56123399871852e-14!GO:0005747;mitochondrial respiratory chain complex I;1.56123399871852e-14!GO:0008135;translation factor activity, nucleic acid binding;1.82463274844776e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.9306141793324e-14!GO:0042773;ATP synthesis coupled electron transport;1.9306141793324e-14!GO:0009055;electron carrier activity;3.09404450704662e-14!GO:0042254;ribosome biogenesis and assembly;4.10151704067413e-14!GO:0016192;vesicle-mediated transport;4.71375412745003e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.05073428147743e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.0528502044297e-13!GO:0008219;cell death;1.18457411524699e-13!GO:0016265;death;1.18457411524699e-13!GO:0048193;Golgi vesicle transport;1.76372414764139e-13!GO:0005789;endoplasmic reticulum membrane;2.248212161357e-13!GO:0006259;DNA metabolic process;3.6396255050494e-13!GO:0044451;nucleoplasm part;9.40987581280537e-13!GO:0009056;catabolic process;1.07476278948528e-12!GO:0006413;translational initiation;1.71017866167571e-12!GO:0003743;translation initiation factor activity;1.93859967364697e-12!GO:0043067;regulation of programmed cell death;4.93215222073497e-12!GO:0042981;regulation of apoptosis;5.75376073465565e-12!GO:0009259;ribonucleotide metabolic process;6.12358070613018e-12!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.41718185363125e-12!GO:0007049;cell cycle;1.39653250217287e-11!GO:0017076;purine nucleotide binding;1.5195134446414e-11!GO:0016491;oxidoreductase activity;2.11447784483161e-11!GO:0032553;ribonucleotide binding;2.12972649183171e-11!GO:0032555;purine ribonucleotide binding;2.12972649183171e-11!GO:0051188;cofactor biosynthetic process;2.485728836143e-11!GO:0043412;biopolymer modification;2.52653210522022e-11!GO:0006461;protein complex assembly;3.13401180716559e-11!GO:0006163;purine nucleotide metabolic process;3.94206288455858e-11!GO:0008134;transcription factor binding;4.74515732806189e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;5.25101744405074e-11!GO:0000375;RNA splicing, via transesterification reactions;5.25101744405074e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.25101744405074e-11!GO:0009141;nucleoside triphosphate metabolic process;5.75395872914059e-11!GO:0009150;purine ribonucleotide metabolic process;6.74386096045645e-11!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.85430680910661e-11!GO:0009260;ribonucleotide biosynthetic process;1.32944641950289e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.72315698825568e-10!GO:0006399;tRNA metabolic process;2.77379195823488e-10!GO:0009199;ribonucleoside triphosphate metabolic process;2.77620392344241e-10!GO:0006464;protein modification process;3.05127573912229e-10!GO:0006446;regulation of translational initiation;3.26466479912117e-10!GO:0006164;purine nucleotide biosynthetic process;3.31178819508379e-10!GO:0008565;protein transporter activity;4.59012108754812e-10!GO:0009152;purine ribonucleotide biosynthetic process;5.62946339682191e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.94174703700695e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.14839503483009e-10!GO:0009144;purine nucleoside triphosphate metabolic process;6.14839503483009e-10!GO:0006974;response to DNA damage stimulus;6.41865014934785e-10!GO:0008639;small protein conjugating enzyme activity;6.43367179866456e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.50375087456527e-10!GO:0009142;nucleoside triphosphate biosynthetic process;8.88783079141829e-10!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.88783079141829e-10!GO:0019787;small conjugating protein ligase activity;9.74590537464896e-10!GO:0009117;nucleotide metabolic process;1.19842874548258e-09!GO:0004842;ubiquitin-protein ligase activity;1.24662527904046e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.04515180325669e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.04515180325669e-09!GO:0043069;negative regulation of programmed cell death;2.09512881409229e-09!GO:0016887;ATPase activity;2.25333930482564e-09!GO:0009108;coenzyme biosynthetic process;2.44477433389917e-09!GO:0015986;ATP synthesis coupled proton transport;2.8799980261692e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.8799980261692e-09!GO:0006364;rRNA processing;3.41808491573088e-09!GO:0016072;rRNA metabolic process;3.90322086520051e-09!GO:0005768;endosome;4.25984811136603e-09!GO:0003924;GTPase activity;4.43027446143584e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.61988404582837e-09!GO:0043066;negative regulation of apoptosis;6.01122495315496e-09!GO:0042623;ATPase activity, coupled;6.01122495315496e-09!GO:0007005;mitochondrion organization and biogenesis;6.75846402632753e-09!GO:0051246;regulation of protein metabolic process;6.83260024952324e-09!GO:0016787;hydrolase activity;7.03845578469486e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.45538033643748e-09!GO:0006916;anti-apoptosis;9.25119055206713e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.61456703076195e-09!GO:0009060;aerobic respiration;9.83969531503038e-09!GO:0016881;acid-amino acid ligase activity;1.26081248666547e-08!GO:0000278;mitotic cell cycle;1.3662216348831e-08!GO:0046034;ATP metabolic process;1.49780154467628e-08!GO:0022402;cell cycle process;1.49780154467628e-08!GO:0048475;coated membrane;2.33630112926507e-08!GO:0030117;membrane coat;2.33630112926507e-08!GO:0019829;cation-transporting ATPase activity;2.89566897687121e-08!GO:0005793;ER-Golgi intermediate compartment;3.06462171365565e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.13636236169388e-08!GO:0005524;ATP binding;3.56122225623879e-08!GO:0043687;post-translational protein modification;3.74434751585979e-08!GO:0006754;ATP biosynthetic process;4.29478525787258e-08!GO:0006753;nucleoside phosphate metabolic process;4.29478525787258e-08!GO:0030554;adenyl nucleotide binding;4.63681856624065e-08!GO:0006913;nucleocytoplasmic transport;4.95238221700643e-08!GO:0032559;adenyl ribonucleotide binding;5.15037885942227e-08!GO:0005635;nuclear envelope;5.86927646406188e-08!GO:0030120;vesicle coat;6.5442058835683e-08!GO:0030662;coated vesicle membrane;6.5442058835683e-08!GO:0045333;cellular respiration;7.30758975539017e-08!GO:0051169;nuclear transport;8.42588518311287e-08!GO:0006752;group transfer coenzyme metabolic process;9.10292130173402e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.46720654763736e-08!GO:0009719;response to endogenous stimulus;1.07410392061565e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.56255463913127e-07!GO:0044431;Golgi apparatus part;1.57297861352066e-07!GO:0048523;negative regulation of cellular process;1.58003184388416e-07!GO:0000074;regulation of progression through cell cycle;1.80738407279072e-07!GO:0051726;regulation of cell cycle;2.025728845062e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.27207560201096e-07!GO:0017038;protein import;2.31456558383931e-07!GO:0006281;DNA repair;3.1199439231218e-07!GO:0006099;tricarboxylic acid cycle;3.67271709910426e-07!GO:0046356;acetyl-CoA catabolic process;3.67271709910426e-07!GO:0006091;generation of precursor metabolites and energy;3.94111683658475e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.39112305921402e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.60572924343714e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.60572924343714e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.60572924343714e-07!GO:0005525;GTP binding;5.49271136348566e-07!GO:0043038;amino acid activation;5.58558012812823e-07!GO:0006418;tRNA aminoacylation for protein translation;5.58558012812823e-07!GO:0043039;tRNA aminoacylation;5.58558012812823e-07!GO:0031965;nuclear membrane;7.88596378082755e-07!GO:0006084;acetyl-CoA metabolic process;8.19402856233736e-07!GO:0051187;cofactor catabolic process;8.56791314319447e-07!GO:0048519;negative regulation of biological process;9.07502639284496e-07!GO:0016604;nuclear body;9.62751930107697e-07!GO:0004298;threonine endopeptidase activity;1.21479261899353e-06!GO:0009967;positive regulation of signal transduction;1.24858751162612e-06!GO:0016853;isomerase activity;1.29691934689811e-06!GO:0003712;transcription cofactor activity;1.47387207998744e-06!GO:0005762;mitochondrial large ribosomal subunit;1.50547277334624e-06!GO:0000315;organellar large ribosomal subunit;1.50547277334624e-06!GO:0044453;nuclear membrane part;1.95972683638319e-06!GO:0045259;proton-transporting ATP synthase complex;1.95972683638319e-06!GO:0009109;coenzyme catabolic process;2.91759564284177e-06!GO:0000314;organellar small ribosomal subunit;3.10587945227359e-06!GO:0005763;mitochondrial small ribosomal subunit;3.10587945227359e-06!GO:0045454;cell redox homeostasis;3.18626277483029e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.26322322152633e-06!GO:0004386;helicase activity;3.32623204140342e-06!GO:0016567;protein ubiquitination;3.6189256201787e-06!GO:0008026;ATP-dependent helicase activity;3.68001087845254e-06!GO:0000139;Golgi membrane;3.70946888726178e-06!GO:0005773;vacuole;3.94210297998834e-06!GO:0032446;protein modification by small protein conjugation;4.10161843186465e-06!GO:0065002;intracellular protein transport across a membrane;4.19283643806351e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.69679552741453e-06!GO:0048522;positive regulation of cellular process;5.36641006882881e-06!GO:0005788;endoplasmic reticulum lumen;6.79031101161987e-06!GO:0044440;endosomal part;7.44250418559541e-06!GO:0010008;endosome membrane;7.44250418559541e-06!GO:0000087;M phase of mitotic cell cycle;9.13555419727826e-06!GO:0016779;nucleotidyltransferase activity;9.31009399456235e-06!GO:0065004;protein-DNA complex assembly;1.13385618519722e-05!GO:0005770;late endosome;1.18493770264139e-05!GO:0016740;transferase activity;1.20697047509811e-05!GO:0007067;mitosis;1.24308196359918e-05!GO:0008654;phospholipid biosynthetic process;1.25888580459118e-05!GO:0032561;guanyl ribonucleotide binding;1.3281099124558e-05!GO:0019001;guanyl nucleotide binding;1.3281099124558e-05!GO:0006613;cotranslational protein targeting to membrane;1.67192320546441e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.71165285199125e-05!GO:0031988;membrane-bound vesicle;1.77402327810948e-05!GO:0016607;nuclear speck;1.94218922889001e-05!GO:0007243;protein kinase cascade;2.06348279975274e-05!GO:0009165;nucleotide biosynthetic process;2.24839000509155e-05!GO:0031252;leading edge;2.24839000509155e-05!GO:0016859;cis-trans isomerase activity;2.33712234835659e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.70591169934595e-05!GO:0016126;sterol biosynthetic process;2.89438902828041e-05!GO:0005643;nuclear pore;3.22328068865104e-05!GO:0051789;response to protein stimulus;3.36139799819447e-05!GO:0006986;response to unfolded protein;3.36139799819447e-05!GO:0000245;spliceosome assembly;3.88113770925407e-05!GO:0006979;response to oxidative stress;3.98224069341706e-05!GO:0043623;cellular protein complex assembly;4.30892229510241e-05!GO:0031968;organelle outer membrane;4.50449788452296e-05!GO:0019867;outer membrane;4.82924574501882e-05!GO:0019843;rRNA binding;5.18080928052077e-05!GO:0000323;lytic vacuole;5.35949666822936e-05!GO:0005764;lysosome;5.35949666822936e-05!GO:0042802;identical protein binding;5.83965295378831e-05!GO:0005694;chromosome;6.92067064493935e-05!GO:0000785;chromatin;7.08433555432546e-05!GO:0005798;Golgi-associated vesicle;7.63107827770249e-05!GO:0031982;vesicle;7.63107827770249e-05!GO:0065009;regulation of a molecular function;7.63953659028519e-05!GO:0005769;early endosome;8.63231876447257e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;9.39738389208516e-05!GO:0003724;RNA helicase activity;9.91217097458487e-05!GO:0005741;mitochondrial outer membrane;9.91217097458487e-05!GO:0006082;organic acid metabolic process;0.000111366959910786!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000117553737572016!GO:0015399;primary active transmembrane transporter activity;0.000117553737572016!GO:0051170;nuclear import;0.000119417557186759!GO:0031410;cytoplasmic vesicle;0.000119831330717126!GO:0043021;ribonucleoprotein binding;0.000122966114235919!GO:0044427;chromosomal part;0.000127582946294281!GO:0000151;ubiquitin ligase complex;0.000129632584180206!GO:0001726;ruffle;0.000130006462743394!GO:0019752;carboxylic acid metabolic process;0.000132540487971048!GO:0006950;response to stress;0.000137772986984851!GO:0022403;cell cycle phase;0.000158346634798465!GO:0006403;RNA localization;0.000169397636173738!GO:0050657;nucleic acid transport;0.000173092672574218!GO:0051236;establishment of RNA localization;0.000173092672574218!GO:0050658;RNA transport;0.000173092672574218!GO:0006323;DNA packaging;0.000179535674532316!GO:0006260;DNA replication;0.000179987023496783!GO:0006334;nucleosome assembly;0.00018793158138528!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000191288099245183!GO:0043681;protein import into mitochondrion;0.000191625719549091!GO:0030867;rough endoplasmic reticulum membrane;0.000192402288005458!GO:0006626;protein targeting to mitochondrion;0.000198245162124803!GO:0046930;pore complex;0.000198245162124803!GO:0030118;clathrin coat;0.000199089970077767!GO:0006612;protein targeting to membrane;0.000204036346814776!GO:0046483;heterocycle metabolic process;0.000221013772441444!GO:0008610;lipid biosynthetic process;0.000238333258016932!GO:0048471;perinuclear region of cytoplasm;0.000239781785444795!GO:0006793;phosphorus metabolic process;0.000254179106834043!GO:0006796;phosphate metabolic process;0.000254179106834043!GO:0003899;DNA-directed RNA polymerase activity;0.000269376118033692!GO:0008033;tRNA processing;0.000280842610928568!GO:0005885;Arp2/3 protein complex;0.000282173934471963!GO:0006118;electron transport;0.00029264992100094!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000297828239024859!GO:0006606;protein import into nucleus;0.000318465906831672!GO:0048468;cell development;0.000319578755246706!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000328108268160514!GO:0006333;chromatin assembly or disassembly;0.000333690820887588!GO:0031072;heat shock protein binding;0.000335185329281994!GO:0005048;signal sequence binding;0.000348258148253001!GO:0004576;oligosaccharyl transferase activity;0.00034853082966864!GO:0048518;positive regulation of biological process;0.00035021645272098!GO:0006839;mitochondrial transport;0.000368521402802177!GO:0043065;positive regulation of apoptosis;0.000377307465865797!GO:0045786;negative regulation of progression through cell cycle;0.000377307465865797!GO:0008632;apoptotic program;0.000415436074696823!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00046948851922178!GO:0003697;single-stranded DNA binding;0.000473434316702955!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000474217919077125!GO:0051276;chromosome organization and biogenesis;0.000479822553733159!GO:0043068;positive regulation of programmed cell death;0.000484608702732913!GO:0030119;AP-type membrane coat adaptor complex;0.000525811946537786!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000528153574985211!GO:0008250;oligosaccharyl transferase complex;0.000533751821766196!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000535648169948073!GO:0006695;cholesterol biosynthetic process;0.000545820848369847!GO:0016044;membrane organization and biogenesis;0.000584100729427548!GO:0015980;energy derivation by oxidation of organic compounds;0.000617983931787377!GO:0005905;coated pit;0.000656719361791657!GO:0051920;peroxiredoxin activity;0.000658701024173885!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000666229666260438!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000705687788918993!GO:0003714;transcription corepressor activity;0.000782659454095139!GO:0005813;centrosome;0.000843032547410191!GO:0030663;COPI coated vesicle membrane;0.000857136653815189!GO:0030126;COPI vesicle coat;0.000857136653815189!GO:0015630;microtubule cytoskeleton;0.000887426098831827!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000934108981868855!GO:0051301;cell division;0.000940534177215337!GO:0043566;structure-specific DNA binding;0.000982612437892286!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00100978845426612!GO:0044452;nucleolar part;0.00114844527420956!GO:0016310;phosphorylation;0.00117302168100817!GO:0030131;clathrin adaptor complex;0.00118667851480541!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00119165715953122!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00119165715953122!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00119165715953122!GO:0051252;regulation of RNA metabolic process;0.00120525491795297!GO:0031497;chromatin assembly;0.00129849823569451!GO:0018196;peptidyl-asparagine modification;0.00129849823569451!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00129849823569451!GO:0005791;rough endoplasmic reticulum;0.00133947878834006!GO:0015992;proton transport;0.00133947878834006!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00145640317197271!GO:0008092;cytoskeletal protein binding;0.00149286982448708!GO:0006818;hydrogen transport;0.00150388764593866!GO:0043492;ATPase activity, coupled to movement of substances;0.00157535371928418!GO:0022890;inorganic cation transmembrane transporter activity;0.00158376092507776!GO:0030036;actin cytoskeleton organization and biogenesis;0.00163630959283184!GO:0000279;M phase;0.00164357905416596!GO:0007006;mitochondrial membrane organization and biogenesis;0.00171951909692424!GO:0006749;glutathione metabolic process;0.00176601079536402!GO:0006891;intra-Golgi vesicle-mediated transport;0.00181691413499453!GO:0008637;apoptotic mitochondrial changes;0.00193675777100594!GO:0030132;clathrin coat of coated pit;0.00197565656416284!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0020312995164715!GO:0005667;transcription factor complex;0.0020396149222716!GO:0030880;RNA polymerase complex;0.00214797566387163!GO:0008186;RNA-dependent ATPase activity;0.0021554212918747!GO:0006414;translational elongation;0.00217095744140873!GO:0006917;induction of apoptosis;0.00218260542616651!GO:0051540;metal cluster binding;0.00218260542616651!GO:0051536;iron-sulfur cluster binding;0.00218260542616651!GO:0033116;ER-Golgi intermediate compartment membrane;0.00232466004499408!GO:0051028;mRNA transport;0.00238801727744376!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00238801727744376!GO:0016197;endosome transport;0.00250358898290868!GO:0044255;cellular lipid metabolic process;0.00251974706294701!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00257884409230934!GO:0008243;plasminogen activator activity;0.00269328940424138!GO:0019899;enzyme binding;0.00273875999177607!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00280936868283652!GO:0015002;heme-copper terminal oxidase activity;0.00280936868283652!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00280936868283652!GO:0004129;cytochrome-c oxidase activity;0.00280936868283652!GO:0030137;COPI-coated vesicle;0.00289924502241473!GO:0050790;regulation of catalytic activity;0.00291506691299866!GO:0012502;induction of programmed cell death;0.00291506691299866!GO:0046474;glycerophospholipid biosynthetic process;0.00294148771731863!GO:0005815;microtubule organizing center;0.00309361142672894!GO:0043488;regulation of mRNA stability;0.00310790576759695!GO:0043487;regulation of RNA stability;0.00310790576759695!GO:0003711;transcription elongation regulator activity;0.00321675983304306!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00325128164903712!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00337212052801703!GO:0046467;membrane lipid biosynthetic process;0.00358448415744052!GO:0048144;fibroblast proliferation;0.00359208463368185!GO:0048145;regulation of fibroblast proliferation;0.00359208463368185!GO:0051087;chaperone binding;0.00364676574766393!GO:0030833;regulation of actin filament polymerization;0.00364676574766393!GO:0003729;mRNA binding;0.00364928736705492!GO:0050662;coenzyme binding;0.00367446700513659!GO:0051168;nuclear export;0.00369151113944588!GO:0016272;prefoldin complex;0.00373713152644159!GO:0048500;signal recognition particle;0.00374241463049838!GO:0030176;integral to endoplasmic reticulum membrane;0.00383416669934567!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0039134746585498!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00401356683343949!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00401356683343949!GO:0046489;phosphoinositide biosynthetic process;0.0040710329512683!GO:0003713;transcription coactivator activity;0.00412295034295864!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00413700618341144!GO:0016408;C-acyltransferase activity;0.0042486899379661!GO:0030658;transport vesicle membrane;0.00435345916443898!GO:0009116;nucleoside metabolic process;0.00438473144705515!GO:0030125;clathrin vesicle coat;0.00438473144705515!GO:0030665;clathrin coated vesicle membrane;0.00438473144705515!GO:0051329;interphase of mitotic cell cycle;0.00441578899597017!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00442280332818403!GO:0004004;ATP-dependent RNA helicase activity;0.00443543753717351!GO:0006366;transcription from RNA polymerase II promoter;0.00471144663641854!GO:0044262;cellular carbohydrate metabolic process;0.00479697808423976!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00479697808423976!GO:0000428;DNA-directed RNA polymerase complex;0.00479697808423976!GO:0006401;RNA catabolic process;0.00508556702016539!GO:0008361;regulation of cell size;0.00509757831543884!GO:0030659;cytoplasmic vesicle membrane;0.00526677533267062!GO:0007034;vacuolar transport;0.00531141398134552!GO:0045045;secretory pathway;0.00531525866048858!GO:0001836;release of cytochrome c from mitochondria;0.00548430848619617!GO:0000786;nucleosome;0.00557375959782624!GO:0048146;positive regulation of fibroblast proliferation;0.00557375959782624!GO:0016049;cell growth;0.00558470157811398!GO:0007010;cytoskeleton organization and biogenesis;0.0057719978635467!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00590213408391642!GO:0006402;mRNA catabolic process;0.00593154990328011!GO:0030503;regulation of cell redox homeostasis;0.00627129852048002!GO:0030029;actin filament-based process;0.00628012401053957!GO:0016125;sterol metabolic process;0.0063108127672064!GO:0005149;interleukin-1 receptor binding;0.00636632766745044!GO:0030133;transport vesicle;0.00642693655994303!GO:0008312;7S RNA binding;0.0064699900909168!GO:0006778;porphyrin metabolic process;0.00659142285224273!GO:0033013;tetrapyrrole metabolic process;0.00659142285224273!GO:0051427;hormone receptor binding;0.00663613290080745!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00689353143702866!GO:0006383;transcription from RNA polymerase III promoter;0.00695424699251258!GO:0043022;ribosome binding;0.00707793472733496!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00710460075067843!GO:0045047;protein targeting to ER;0.00710460075067843!GO:0051098;regulation of binding;0.00717434446826433!GO:0030031;cell projection biogenesis;0.00722293271563235!GO:0008139;nuclear localization sequence binding;0.00791127886452452!GO:0006417;regulation of translation;0.00806861921676622!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00813584002480461!GO:0033673;negative regulation of kinase activity;0.00818482094880779!GO:0006469;negative regulation of protein kinase activity;0.00818482094880779!GO:0003676;nucleic acid binding;0.00821331259891395!GO:0005869;dynactin complex;0.00833468040920915!GO:0006007;glucose catabolic process;0.00881627973383279!GO:0043284;biopolymer biosynthetic process;0.00881627973383279!GO:0006595;polyamine metabolic process;0.00900069890158822!GO:0007088;regulation of mitosis;0.00981683025387152!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00984985237520542!GO:0032940;secretion by cell;0.00989630555290357!GO:0050750;low-density lipoprotein receptor binding;0.00992597143034605!GO:0044433;cytoplasmic vesicle part;0.0101917763762568!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0103339755505959!GO:0000049;tRNA binding;0.0104382582998775!GO:0055092;sterol homeostasis;0.0104704017193889!GO:0042632;cholesterol homeostasis;0.0104704017193889!GO:0030660;Golgi-associated vesicle membrane;0.0106024355848346!GO:0005774;vacuolar membrane;0.0107049276276381!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0112758994821379!GO:0035257;nuclear hormone receptor binding;0.0114333937548451!GO:0055088;lipid homeostasis;0.0116424334314779!GO:0022406;membrane docking;0.01167617089015!GO:0048278;vesicle docking;0.01167617089015!GO:0051101;regulation of DNA binding;0.0121015918056235!GO:0048487;beta-tubulin binding;0.0125070768960823!GO:0005856;cytoskeleton;0.0125918209026503!GO:0008180;signalosome;0.012596459424758!GO:0009112;nucleobase metabolic process;0.0127207592468911!GO:0001558;regulation of cell growth;0.0130761265363744!GO:0008234;cysteine-type peptidase activity;0.0130850394184739!GO:0005684;U2-dependent spliceosome;0.0133515746024129!GO:0006520;amino acid metabolic process;0.0133838925331653!GO:0007050;cell cycle arrest;0.0134837496331927!GO:0005832;chaperonin-containing T-complex;0.0139729462683205!GO:0022411;cellular component disassembly;0.0144829916356526!GO:0005862;muscle thin filament tropomyosin;0.0145205743555365!GO:0005758;mitochondrial intermembrane space;0.0148774518012971!GO:0043154;negative regulation of caspase activity;0.0149042796361109!GO:0051128;regulation of cellular component organization and biogenesis;0.0152181344731226!GO:0006767;water-soluble vitamin metabolic process;0.0153754132196194!GO:0009889;regulation of biosynthetic process;0.0153758051120528!GO:0030041;actin filament polymerization;0.0155678300358719!GO:0030032;lamellipodium biogenesis;0.0156481559222758!GO:0043624;cellular protein complex disassembly;0.0156547069010661!GO:0051539;4 iron, 4 sulfur cluster binding;0.0156591490587571!GO:0031902;late endosome membrane;0.0158810811317161!GO:0016564;transcription repressor activity;0.0162072680859985!GO:0048037;cofactor binding;0.0165530210813921!GO:0006904;vesicle docking during exocytosis;0.0169376023328227!GO:0008299;isoprenoid biosynthetic process;0.0171229318235567!GO:0007021;tubulin folding;0.0174265917108354!GO:0043281;regulation of caspase activity;0.01779647639949!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0178060787193497!GO:0006611;protein export from nucleus;0.0179058912871673!GO:0016363;nuclear matrix;0.0181106537795051!GO:0009166;nucleotide catabolic process;0.0185505445920257!GO:0012506;vesicle membrane;0.0185747499393858!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0186674687751173!GO:0000209;protein polyubiquitination;0.0189048688751986!GO:0004197;cysteine-type endopeptidase activity;0.018955938226774!GO:0006629;lipid metabolic process;0.0196028580879664!GO:0017166;vinculin binding;0.0199501105855644!GO:0004518;nuclease activity;0.0199881877477943!GO:0051348;negative regulation of transferase activity;0.0206021965981857!GO:0015631;tubulin binding;0.0208254393862787!GO:0009119;ribonucleoside metabolic process;0.0211114540161227!GO:0032984;macromolecular complex disassembly;0.0213948864519221!GO:0043086;negative regulation of catalytic activity;0.021644358388972!GO:0044437;vacuolar part;0.0216633063947198!GO:0051325;interphase;0.0219509472151293!GO:0031970;organelle envelope lumen;0.0221324855270287!GO:0006733;oxidoreduction coenzyme metabolic process;0.0221324855270287!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0221324855270287!GO:0006779;porphyrin biosynthetic process;0.0226035644343836!GO:0033014;tetrapyrrole biosynthetic process;0.0226035644343836!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.02292905055949!GO:0007264;small GTPase mediated signal transduction;0.02292905055949!GO:0008283;cell proliferation;0.022948536296809!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0233259170733957!GO:0043433;negative regulation of transcription factor activity;0.0233965023488691!GO:0042168;heme metabolic process;0.0236963353884964!GO:0016563;transcription activator activity;0.0238912857975471!GO:0007041;lysosomal transport;0.0241353946915186!GO:0031324;negative regulation of cellular metabolic process;0.0241514783810445!GO:0006650;glycerophospholipid metabolic process;0.024314446574694!GO:0000082;G1/S transition of mitotic cell cycle;0.024314446574694!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.024729592093186!GO:0008538;proteasome activator activity;0.0250986545288643!GO:0046365;monosaccharide catabolic process;0.0252283174812978!GO:0051716;cellular response to stimulus;0.0252308329448886!GO:0046519;sphingoid metabolic process;0.0252911433763626!GO:0051338;regulation of transferase activity;0.0257446943591309!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0257446943591309!GO:0031529;ruffle organization and biogenesis;0.0259925009010574!GO:0031326;regulation of cellular biosynthetic process;0.0261600846774546!GO:0000339;RNA cap binding;0.0263970347969079!GO:0051235;maintenance of localization;0.0265047142451633!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0270400717126998!GO:0051287;NAD binding;0.0275429940335434!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.028092290830946!GO:0045039;protein import into mitochondrial inner membrane;0.028092290830946!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0283907105753392!GO:0051272;positive regulation of cell motility;0.0291740991717843!GO:0040017;positive regulation of locomotion;0.0291740991717843!GO:0051881;regulation of mitochondrial membrane potential;0.0292105531571927!GO:0030100;regulation of endocytosis;0.0292265672050245!GO:0046870;cadmium ion binding;0.029641053445938!GO:0030134;ER to Golgi transport vesicle;0.0297024187153717!GO:0008047;enzyme activator activity;0.0300688206574289!GO:0006352;transcription initiation;0.0316700984742179!GO:0003690;double-stranded DNA binding;0.0322069623725441!GO:0006302;double-strand break repair;0.0322532110871288!GO:0006506;GPI anchor biosynthetic process;0.0322969376021686!GO:0016251;general RNA polymerase II transcription factor activity;0.0323170333456227!GO:0016070;RNA metabolic process;0.0328951211474803!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0331044787613812!GO:0009451;RNA modification;0.0333102475297595!GO:0008320;protein transmembrane transporter activity;0.0334353714644684!GO:0003756;protein disulfide isomerase activity;0.0334833879962023!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0334833879962023!GO:0016568;chromatin modification;0.0335003112019896!GO:0035258;steroid hormone receptor binding;0.0335547353079794!GO:0031625;ubiquitin protein ligase binding;0.0337657382592849!GO:0030521;androgen receptor signaling pathway;0.0338122933953282!GO:0006897;endocytosis;0.0338122933953282!GO:0010324;membrane invagination;0.0338122933953282!GO:0000178;exosome (RNase complex);0.0339195883082953!GO:0051052;regulation of DNA metabolic process;0.033943509631243!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0341286605214306!GO:0030145;manganese ion binding;0.0353132454439685!GO:0046822;regulation of nucleocytoplasmic transport;0.0353643389354651!GO:0051537;2 iron, 2 sulfur cluster binding;0.0353911955461268!GO:0022884;macromolecule transmembrane transporter activity;0.0355663062397405!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0355663062397405!GO:0003684;damaged DNA binding;0.0355663062397405!GO:0035035;histone acetyltransferase binding;0.0360246320031101!GO:0043241;protein complex disassembly;0.0364573240850991!GO:0000287;magnesium ion binding;0.0365004894556231!GO:0006740;NADPH regeneration;0.0365994027895331!GO:0006098;pentose-phosphate shunt;0.0365994027895331!GO:0043549;regulation of kinase activity;0.0365994027895331!GO:0030508;thiol-disulfide exchange intermediate activity;0.0372099473733971!GO:0008426;protein kinase C inhibitor activity;0.037428500922228!GO:0005765;lysosomal membrane;0.037428500922228!GO:0001666;response to hypoxia;0.0376442764329621!GO:0030911;TPR domain binding;0.0377329620389984!GO:0016407;acetyltransferase activity;0.0377329620389984!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.038347161541952!GO:0033043;regulation of organelle organization and biogenesis;0.038347161541952!GO:0019320;hexose catabolic process;0.0385269082885615!GO:0031371;ubiquitin conjugating enzyme complex;0.0390557063514104!GO:0009892;negative regulation of metabolic process;0.0391613158390787!GO:0048660;regulation of smooth muscle cell proliferation;0.0391613158390787!GO:0006505;GPI anchor metabolic process;0.0401611852048191!GO:0006643;membrane lipid metabolic process;0.0406959457367482!GO:0045334;clathrin-coated endocytic vesicle;0.0407667168038621!GO:0045936;negative regulation of phosphate metabolic process;0.0408630178807942!GO:0030384;phosphoinositide metabolic process;0.0410984866113579!GO:0046164;alcohol catabolic process;0.0411003391026315!GO:0045185;maintenance of protein localization;0.0413846909906976!GO:0006144;purine base metabolic process;0.0415281384006203!GO:0004532;exoribonuclease activity;0.0418169566384155!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0418169566384155!GO:0003746;translation elongation factor activity;0.0418169566384155!GO:0000096;sulfur amino acid metabolic process;0.0418169566384155!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0418551162068431!GO:0030027;lamellipodium;0.0418551162068431!GO:0005777;peroxisome;0.0419481882292243!GO:0042579;microbody;0.0419481882292243!GO:0050811;GABA receptor binding;0.0431721588310186!GO:0008415;acyltransferase activity;0.0433658219838198!GO:0005784;translocon complex;0.0434449047903262!GO:0006458;'de novo' protein folding;0.0441910204987678!GO:0051084;'de novo' posttranslational protein folding;0.0441910204987678!GO:0016746;transferase activity, transferring acyl groups;0.0446132827866515!GO:0032507;maintenance of cellular protein localization;0.0457684182691579!GO:0031575;G1/S transition checkpoint;0.0459853450222667!GO:0006096;glycolysis;0.0460328039144435!GO:0030984;kininogen binding;0.0460328039144435!GO:0004213;cathepsin B activity;0.0460328039144435!GO:0033559;unsaturated fatty acid metabolic process;0.0462628580686998!GO:0006636;unsaturated fatty acid biosynthetic process;0.0462628580686998!GO:0000086;G2/M transition of mitotic cell cycle;0.0467964980551571!GO:0051775;response to redox state;0.0468314236077098!GO:0006980;redox signal response;0.0468314236077098!GO:0008097;5S rRNA binding;0.0468549278281494!GO:0006354;RNA elongation;0.0468724955167828!GO:0006518;peptide metabolic process;0.0474278347791813!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0476513766053554!GO:0030127;COPII vesicle coat;0.0476513766053554!GO:0012507;ER to Golgi transport vesicle membrane;0.0476513766053554!GO:0006497;protein amino acid lipidation;0.0477938190848609!GO:0042158;lipoprotein biosynthetic process;0.0478189325482754!GO:0007040;lysosome organization and biogenesis;0.0478262248806596!GO:0004549;tRNA-specific ribonuclease activity;0.0481249302865528!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0481249302865528!GO:0008629;induction of apoptosis by intracellular signals;0.049568023270108 | |||
|sample_id=12142 | |sample_id=12142 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=TP53:2.11589327835;ADNP_IRX_SIX_ZHX:1.78418571308;TBP:1.70690656324;ZEB1:1.50548108127;SNAI1..3:1.32096185134;TBX4,5:1.30318772128;VSX1,2:1.22303851588;NKX2-3_NKX2-5:1.21886514211;NKX2-2,8:1.21320330146;PDX1:1.1159132172;NFIX:1.08832232372;TEF:1.05655898704;MYOD1:1.04283031085;HIF1A:1.02141106363;HAND1,2:0.977528012111;ONECUT1,2:0.890745967366;NFIL3:0.888261320386;PPARG:0.855218685204;NANOG:0.837998009456;TEAD1:0.822132298449;FOS_FOS{B,L1}_JUN{B,D}:0.801365952326;CDC5L:0.783572594058;HSF1,2:0.770827418552;ELK1,4_GABP{A,B1}:0.739959242921;NKX3-2:0.727218485121;NR5A1,2:0.697617260164;BACH2:0.675720324134;TFCP2:0.668529126281;PAX4:0.667761487141;FOSL2:0.590430451627;HES1:0.562005077917;HOX{A5,B5}:0.554781029046;POU3F1..4:0.553073291616;HOX{A4,D4}:0.551685238075;ZNF148:0.534286988288;MTF1:0.511254897144;CRX:0.506088021157;FOXL1:0.475163857113;ZNF238:0.463969702387;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.441620447589;HLF:0.424363182369;bHLH_family:0.408061170791;FOX{I1,J2}:0.402527702385;LMO2:0.39261000977;SOX17:0.389585036852;NFE2:0.384815032611;CEBPA,B_DDIT3:0.324333763234;FOXQ1:0.309153772734;OCT4_SOX2{dimer}:0.308851103633;NFE2L1:0.299339376078;SOX2:0.298336977934;GZF1:0.295269694504;POU1F1:0.293438972984;FOX{F1,F2,J1}:0.232736414361;SMAD1..7,9:0.227074090674;GFI1B:0.198198847214;MAFB:0.197939172626;FOXM1:0.194005413977;TLX1..3_NFIC{dimer}:0.191756300976;GATA6:0.188817935937;EBF1:0.184181083167;T:0.176950701148;NFE2L2:0.121814553072;XCPE1{core}:0.11023377478;JUN:0.102847613623;GLI1..3:0.0976431703861;POU6F1:0.0820717539479;SP1:0.0583579579364;NFKB1_REL_RELA:0.0267835214885;HNF1A:0.0214042147965;SPZ1:0.00532414655899;ARID5B:-0.00102301939401;AR:-0.00340268137597;ETS1,2:-0.0131178339279;NRF1:-0.0239327681473;NFATC1..3:-0.027128484531;ZNF143:-0.0291412775192;NHLH1,2:-0.0319715211618;PAX5:-0.036443383512;YY1:-0.0424697531354;FOXP3:-0.0434990254096;LEF1_TCF7_TCF7L1,2:-0.044371413041;ELF1,2,4:-0.0467342116242;NR1H4:-0.068023041109;HMGA1,2:-0.0722499939654;PRRX1,2:-0.0751538583314;PAX1,9:-0.0755086419809;PAX8:-0.0816202163513;DBP:-0.0819417898283;REST:-0.0852311371514;STAT1,3:-0.0903714964115;FOXO1,3,4:-0.0937516966241;MYBL2:-0.102829001353;GCM1,2:-0.10409053147;RORA:-0.114242927693;PAX2:-0.143837337143;MEF2{A,B,C,D}:-0.144013489745;SRF:-0.146541523798;LHX3,4:-0.160650776844;SOX{8,9,10}:-0.189791286299;ATF6:-0.198465270469;IRF7:-0.209156347039;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.211515683393;TFAP2{A,C}:-0.217612154057;RUNX1..3:-0.220146701571;TFAP4:-0.222347721602;ESRRA:-0.263042677591;POU5F1:-0.275722574351;STAT5{A,B}:-0.303668342303;POU2F1..3:-0.30543890333;MAZ:-0.308886265021;ZBTB6:-0.313739877285;RBPJ:-0.334012872372;HNF4A_NR2F1,2:-0.334738358566;ATF5_CREB3:-0.339845542403;SPI1:-0.34828928185;GFI1:-0.371701422373;TGIF1:-0.374857750304;ALX1:-0.384993775895;SPIB:-0.389085463274;E2F1..5:-0.391786662379;ZIC1..3:-0.403978349174;KLF4:-0.406051206503;ATF2:-0.40881463664;NR3C1:-0.414019511756;SREBF1,2:-0.415167349293;RFX2..5_RFXANK_RFXAP:-0.423665479695;TLX2:-0.44380565885;STAT2,4,6:-0.45420321186;GTF2A1,2:-0.466681442717;PBX1:-0.467372155724;MYFfamily:-0.478170924452;FOXA2:-0.480946858728;PAX6:-0.482606663759;CREB1:-0.490656095922;IKZF1:-0.502311310462;HOXA9_MEIS1:-0.509382274134;EN1,2:-0.548585836808;EVI1:-0.56311799795;GTF2I:-0.564510472918;RFX1:-0.565369126213;NKX2-1,4:-0.575393966515;FOXN1:-0.59631151001;HMX1:-0.619186470856;HOX{A6,A7,B6,B7}:-0.626582746462;NFY{A,B,C}:-0.628286772462;SOX5:-0.646857956624;XBP1:-0.674939109746;TFDP1:-0.675197706029;IRF1,2:-0.677494061063;UFEwm:-0.685794981765;CDX1,2,4:-0.702259211233;ESR1:-0.707034507076;MYB:-0.710465694562;MED-1{core}:-0.79011750325;NR6A1:-0.795681696334;ALX4:-0.798506933985;MTE{core}:-0.803743829198;EP300:-0.806639977047;PRDM1:-0.807146455292;CUX2:-0.826419203838;HIC1:-0.829429512615;PITX1..3:-0.832515419931;TAL1_TCF{3,4,12}:-0.841237898642;TFAP2B:-0.84522997346;FOXD3:-0.845285716799;ZFP161:-0.87049334105;ZNF384:-0.874758344394;ATF4:-0.877909825427;AHR_ARNT_ARNT2:-0.919493046784;ZNF423:-0.940815379852;ZBTB16:-0.987546593202;FOX{D1,D2}:-1.00477711052;DMAP1_NCOR{1,2}_SMARC:-1.05146533115;RREB1:-1.10317558381;MZF1:-1.10605923599;FOXP1:-1.12548445548;NKX6-1,2:-1.1460879417;EGR1..3:-1.15413439123;HBP1_HMGB_SSRP1_UBTF:-1.1987239804;PATZ1:-1.27004074163;RXR{A,B,G}:-1.30659287483;IKZF2:-1.3474818546;PAX3,7:-1.38087234931;BPTF:-1.39341850793;AIRE:-1.41302493445;GATA4:-1.49098055951;NANOG{mouse}:-1.5116924145;NKX3-1:-1.64346586932;BREu{core}:-1.71205767794;RXRA_VDR{dimer}:-1.80559823272;TOPORS:-1.80620379297 | |top_motifs=TP53:2.11589327835;ADNP_IRX_SIX_ZHX:1.78418571308;TBP:1.70690656324;ZEB1:1.50548108127;SNAI1..3:1.32096185134;TBX4,5:1.30318772128;VSX1,2:1.22303851588;NKX2-3_NKX2-5:1.21886514211;NKX2-2,8:1.21320330146;PDX1:1.1159132172;NFIX:1.08832232372;TEF:1.05655898704;MYOD1:1.04283031085;HIF1A:1.02141106363;HAND1,2:0.977528012111;ONECUT1,2:0.890745967366;NFIL3:0.888261320386;PPARG:0.855218685204;NANOG:0.837998009456;TEAD1:0.822132298449;FOS_FOS{B,L1}_JUN{B,D}:0.801365952326;CDC5L:0.783572594058;HSF1,2:0.770827418552;ELK1,4_GABP{A,B1}:0.739959242921;NKX3-2:0.727218485121;NR5A1,2:0.697617260164;BACH2:0.675720324134;TFCP2:0.668529126281;PAX4:0.667761487141;FOSL2:0.590430451627;HES1:0.562005077917;HOX{A5,B5}:0.554781029046;POU3F1..4:0.553073291616;HOX{A4,D4}:0.551685238075;ZNF148:0.534286988288;MTF1:0.511254897144;CRX:0.506088021157;FOXL1:0.475163857113;ZNF238:0.463969702387;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.441620447589;HLF:0.424363182369;bHLH_family:0.408061170791;FOX{I1,J2}:0.402527702385;LMO2:0.39261000977;SOX17:0.389585036852;NFE2:0.384815032611;CEBPA,B_DDIT3:0.324333763234;FOXQ1:0.309153772734;OCT4_SOX2{dimer}:0.308851103633;NFE2L1:0.299339376078;SOX2:0.298336977934;GZF1:0.295269694504;POU1F1:0.293438972984;FOX{F1,F2,J1}:0.232736414361;SMAD1..7,9:0.227074090674;GFI1B:0.198198847214;MAFB:0.197939172626;FOXM1:0.194005413977;TLX1..3_NFIC{dimer}:0.191756300976;GATA6:0.188817935937;EBF1:0.184181083167;T:0.176950701148;NFE2L2:0.121814553072;XCPE1{core}:0.11023377478;JUN:0.102847613623;GLI1..3:0.0976431703861;POU6F1:0.0820717539479;SP1:0.0583579579364;NFKB1_REL_RELA:0.0267835214885;HNF1A:0.0214042147965;SPZ1:0.00532414655899;ARID5B:-0.00102301939401;AR:-0.00340268137597;ETS1,2:-0.0131178339279;NRF1:-0.0239327681473;NFATC1..3:-0.027128484531;ZNF143:-0.0291412775192;NHLH1,2:-0.0319715211618;PAX5:-0.036443383512;YY1:-0.0424697531354;FOXP3:-0.0434990254096;LEF1_TCF7_TCF7L1,2:-0.044371413041;ELF1,2,4:-0.0467342116242;NR1H4:-0.068023041109;HMGA1,2:-0.0722499939654;PRRX1,2:-0.0751538583314;PAX1,9:-0.0755086419809;PAX8:-0.0816202163513;DBP:-0.0819417898283;REST:-0.0852311371514;STAT1,3:-0.0903714964115;FOXO1,3,4:-0.0937516966241;MYBL2:-0.102829001353;GCM1,2:-0.10409053147;RORA:-0.114242927693;PAX2:-0.143837337143;MEF2{A,B,C,D}:-0.144013489745;SRF:-0.146541523798;LHX3,4:-0.160650776844;SOX{8,9,10}:-0.189791286299;ATF6:-0.198465270469;IRF7:-0.209156347039;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.211515683393;TFAP2{A,C}:-0.217612154057;RUNX1..3:-0.220146701571;TFAP4:-0.222347721602;ESRRA:-0.263042677591;POU5F1:-0.275722574351;STAT5{A,B}:-0.303668342303;POU2F1..3:-0.30543890333;MAZ:-0.308886265021;ZBTB6:-0.313739877285;RBPJ:-0.334012872372;HNF4A_NR2F1,2:-0.334738358566;ATF5_CREB3:-0.339845542403;SPI1:-0.34828928185;GFI1:-0.371701422373;TGIF1:-0.374857750304;ALX1:-0.384993775895;SPIB:-0.389085463274;E2F1..5:-0.391786662379;ZIC1..3:-0.403978349174;KLF4:-0.406051206503;ATF2:-0.40881463664;NR3C1:-0.414019511756;SREBF1,2:-0.415167349293;RFX2..5_RFXANK_RFXAP:-0.423665479695;TLX2:-0.44380565885;STAT2,4,6:-0.45420321186;GTF2A1,2:-0.466681442717;PBX1:-0.467372155724;MYFfamily:-0.478170924452;FOXA2:-0.480946858728;PAX6:-0.482606663759;CREB1:-0.490656095922;IKZF1:-0.502311310462;HOXA9_MEIS1:-0.509382274134;EN1,2:-0.548585836808;EVI1:-0.56311799795;GTF2I:-0.564510472918;RFX1:-0.565369126213;NKX2-1,4:-0.575393966515;FOXN1:-0.59631151001;HMX1:-0.619186470856;HOX{A6,A7,B6,B7}:-0.626582746462;NFY{A,B,C}:-0.628286772462;SOX5:-0.646857956624;XBP1:-0.674939109746;TFDP1:-0.675197706029;IRF1,2:-0.677494061063;UFEwm:-0.685794981765;CDX1,2,4:-0.702259211233;ESR1:-0.707034507076;MYB:-0.710465694562;MED-1{core}:-0.79011750325;NR6A1:-0.795681696334;ALX4:-0.798506933985;MTE{core}:-0.803743829198;EP300:-0.806639977047;PRDM1:-0.807146455292;CUX2:-0.826419203838;HIC1:-0.829429512615;PITX1..3:-0.832515419931;TAL1_TCF{3,4,12}:-0.841237898642;TFAP2B:-0.84522997346;FOXD3:-0.845285716799;ZFP161:-0.87049334105;ZNF384:-0.874758344394;ATF4:-0.877909825427;AHR_ARNT_ARNT2:-0.919493046784;ZNF423:-0.940815379852;ZBTB16:-0.987546593202;FOX{D1,D2}:-1.00477711052;DMAP1_NCOR{1,2}_SMARC:-1.05146533115;RREB1:-1.10317558381;MZF1:-1.10605923599;FOXP1:-1.12548445548;NKX6-1,2:-1.1460879417;EGR1..3:-1.15413439123;HBP1_HMGB_SSRP1_UBTF:-1.1987239804;PATZ1:-1.27004074163;RXR{A,B,G}:-1.30659287483;IKZF2:-1.3474818546;PAX3,7:-1.38087234931;BPTF:-1.39341850793;AIRE:-1.41302493445;GATA4:-1.49098055951;NANOG{mouse}:-1.5116924145;NKX3-1:-1.64346586932;BREu{core}:-1.71205767794;RXRA_VDR{dimer}:-1.80559823272;TOPORS:-1.80620379297 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12142-128E9;search_select_hide=table117:FF:12142-128E9 | |||
}} | }} | ||
Latest revision as of 18:32, 4 June 2020
| Name: | Mallassez-derived cells, donor1 (MZH3) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12538 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12538
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12538
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.328 |
| 10 | 10 | 0.969 |
| 100 | 100 | 0.743 |
| 101 | 101 | 0.609 |
| 102 | 102 | 0.732 |
| 103 | 103 | 0.157 |
| 104 | 104 | 0.765 |
| 105 | 105 | 0.0706 |
| 106 | 106 | 0.253 |
| 107 | 107 | 0.312 |
| 108 | 108 | 0.819 |
| 109 | 109 | 0.00455 |
| 11 | 11 | 0.121 |
| 110 | 110 | 0.186 |
| 111 | 111 | 0.458 |
| 112 | 112 | 0.145 |
| 113 | 113 | 0.695 |
| 114 | 114 | 0.192 |
| 115 | 115 | 0.065 |
| 116 | 116 | 0.993 |
| 117 | 117 | 0.379 |
| 118 | 118 | 0.593 |
| 119 | 119 | 0.36 |
| 12 | 12 | 0.888 |
| 120 | 120 | 0.115 |
| 121 | 121 | 0.885 |
| 122 | 122 | 0.136 |
| 123 | 123 | 0.205 |
| 124 | 124 | 0.511 |
| 125 | 125 | 0.415 |
| 126 | 126 | 0.258 |
| 127 | 127 | 0.0362 |
| 128 | 128 | 0.861 |
| 129 | 129 | 0.0611 |
| 13 | 13 | 0.0265 |
| 130 | 130 | 0.527 |
| 131 | 131 | 0.279 |
| 132 | 132 | 0.836 |
| 133 | 133 | 0.0166 |
| 134 | 134 | 0.97 |
| 135 | 135 | 0.549 |
| 136 | 136 | 0.292 |
| 137 | 137 | 0.624 |
| 138 | 138 | 0.48 |
| 139 | 139 | 0.702 |
| 14 | 14 | 0.682 |
| 140 | 140 | 0.355 |
| 141 | 141 | 0.722 |
| 142 | 142 | 0.477 |
| 143 | 143 | 0.0764 |
| 144 | 144 | 0.751 |
| 145 | 145 | 0.288 |
| 146 | 146 | 0.0116 |
| 147 | 147 | 0.488 |
| 148 | 148 | 0.228 |
| 149 | 149 | 0.843 |
| 15 | 15 | 0.206 |
| 150 | 150 | 0.552 |
| 151 | 151 | 0.304 |
| 152 | 152 | 0.0267 |
| 153 | 153 | 0.16 |
| 154 | 154 | 0.686 |
| 155 | 155 | 0.381 |
| 156 | 156 | 0.817 |
| 157 | 157 | 0.751 |
| 158 | 158 | 0.769 |
| 159 | 159 | 0.4 |
| 16 | 16 | 0.145 |
| 160 | 160 | 0.341 |
| 161 | 161 | 0.5 |
| 162 | 162 | 0.579 |
| 163 | 163 | 0.938 |
| 164 | 164 | 0.953 |
| 165 | 165 | 0.496 |
| 166 | 166 | 0.995 |
| 167 | 167 | 0.683 |
| 168 | 168 | 0.215 |
| 169 | 169 | 0.0548 |
| 17 | 17 | 0.181 |
| 18 | 18 | 0.124 |
| 19 | 19 | 0.862 |
| 2 | 2 | 0.227 |
| 20 | 20 | 0.956 |
| 21 | 21 | 0.872 |
| 22 | 22 | 0.427 |
| 23 | 23 | 0.159 |
| 24 | 24 | 0.0189 |
| 25 | 25 | 0.363 |
| 26 | 26 | 0.819 |
| 27 | 27 | 0.194 |
| 28 | 28 | 0.425 |
| 29 | 29 | 0.388 |
| 3 | 3 | 0.26 |
| 30 | 30 | 0.194 |
| 31 | 31 | 0.583 |
| 32 | 32 | 0.509 |
| 33 | 33 | 0.127 |
| 34 | 34 | 0.825 |
| 35 | 35 | 0.386 |
| 36 | 36 | 0.323 |
| 37 | 37 | 0.0575 |
| 38 | 38 | 0.312 |
| 39 | 39 | 0.548 |
| 4 | 4 | 0.564 |
| 40 | 40 | 0.0106 |
| 41 | 41 | 0.933 |
| 42 | 42 | 0.277 |
| 43 | 43 | 0.308 |
| 44 | 44 | 0.566 |
| 45 | 45 | 0.0515 |
| 46 | 46 | 0.439 |
| 47 | 47 | 0.0992 |
| 48 | 48 | 0.129 |
| 49 | 49 | 0.592 |
| 5 | 5 | 0.499 |
| 50 | 50 | 0.603 |
| 51 | 51 | 0.812 |
| 52 | 52 | 0.332 |
| 53 | 53 | 0.768 |
| 54 | 54 | 0.355 |
| 55 | 55 | 0.285 |
| 56 | 56 | 0.312 |
| 57 | 57 | 0.215 |
| 58 | 58 | 0.377 |
| 59 | 59 | 0.318 |
| 6 | 6 | 0.632 |
| 60 | 60 | 0.13 |
| 61 | 61 | 0.726 |
| 62 | 62 | 0.371 |
| 63 | 63 | 0.181 |
| 64 | 64 | 0.271 |
| 65 | 65 | 0.423 |
| 66 | 66 | 0.166 |
| 67 | 67 | 0.58 |
| 68 | 68 | 0.0433 |
| 69 | 69 | 0.891 |
| 7 | 7 | 0.077 |
| 70 | 70 | 0.0177 |
| 71 | 71 | 0.17 |
| 72 | 72 | 0.323 |
| 73 | 73 | 0.00591 |
| 74 | 74 | 0.532 |
| 75 | 75 | 0.2 |
| 76 | 76 | 0.709 |
| 77 | 77 | 0.0262 |
| 78 | 78 | 0.0328 |
| 79 | 79 | 0.109 |
| 8 | 8 | 0.207 |
| 80 | 80 | 0.465 |
| 81 | 81 | 0.938 |
| 82 | 82 | 0.613 |
| 83 | 83 | 0.173 |
| 84 | 84 | 0.413 |
| 85 | 85 | 0.173 |
| 86 | 86 | 0.955 |
| 87 | 87 | 0.0264 |
| 88 | 88 | 0.723 |
| 89 | 89 | 0.00702 |
| 9 | 9 | 0.664 |
| 90 | 90 | 0.647 |
| 91 | 91 | 0.89 |
| 92 | 92 | 0.502 |
| 93 | 93 | 0.064 |
| 94 | 94 | 0.42 |
| 95 | 95 | 0.00257 |
| 96 | 96 | 0.4 |
| 97 | 97 | 0.457 |
| 98 | 98 | 0.251 |
| 99 | 99 | 0.151 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12538
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000087 human Malassez derived epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002166 (epithelial cell of Malassez)
UBERON: Anatomy
0000468 (multi-cellular organism)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0004765 (skeletal element)
0001708 (jaw skeleton)
0011159 (primary subdivision of cranial skeletal system)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0008895 (splanchnocranium)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000087 (human Malassez derived epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)
