FF:10810-111A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005708 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005708 | ||
|ancestors_in_disease_facet=DOID: | |accession_numbers=CAGE;DRX007823;DRR008695;DRZ000120;DRZ001505;DRZ011470;DRZ012855 | ||
|accession_numbers_RNASeq=RNA-Seq;DRX057145;DRR062904;DRZ007980 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002369,UBERON:0002100,UBERON:0001851,UBERON:0001235,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0005172,UBERON:0002530,UBERON:0006858,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:299 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10810-111A9 | |id=FF:10810-111A9 | ||
|is_a=DOID:7;;EFO:0002091 | |is_a=DOID:7;;EFO:0002091;;FF:0000210;;FF:0100167;;UBERON:0001235 | ||
|is_obsolete= | |||
|library_id=CNhs11893 | |||
|library_id_phase_based=2:CNhs11893 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10810 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10810 | |||
|name=adrenal cortex adenocarcinoma cell line:SW-13 | |name=adrenal cortex adenocarcinoma cell line:SW-13 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11893,LSID830,release010,COMPLETED | |profile_hcage=CNhs11893,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0456444980788945,0,0.136396846467536,-7.4582782204957e-05,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.103577747945808,0,0.0248726312013101,0,0,0,0.13962683917274,0,0,0.0388991348310618,0,0,0,0,0,0,0,0,0,0,0,0,-0.0656317483601882,0.0806082056284404,0,0,0,0,0,0,0,0.00065761008847572,0,0,0,0,0,0.00815791425380266,0.134840339732678,0.0378479784900733,0,0,-0.00296997473024245,0,0,0,0,0,0,0,0,0.134840339732678,0,0,0,0,0,0,0,0,0,0,0,0,0.0094346331488722,0,0,-0.0932245680545911,0,0,0,0.00158661046145814,0.218832609774632,0,0,0,0,-0.0980353512377064,0.195920415033317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.071500962721151,0.0943736524828545,0,0,-0.00905928230713096,-0.216298547222791,0,0,0.0497452624026201,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0497452624026201,-0.0980353512377064,0,0,0.294661102172681,0,0,0,0,0,0,0,0,-0.197433612882944,0.0248726312013101,0.667809075417363,0.0624473856418087,0,0,-0.092881471075358,0,0,0,0,0.0497452624026201,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0.0248726312013101,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.0139518233947475,-0.0683442610773682,0,0,0,0.0556054090594795,-0.17586701685147,0,-0.0711342213911205,-0.0827201683234173,0,0.0714613301688769,-0.055712496781182,0,0,0,-0.496276520908254,-0.0521190930735322,0,0,-0.121779851751874,0.100979359234078,0,0,-0.341299319149015,0,0.0167438083562974,-0.0410977573990417,0,0.16466738091539,0,0,0,0,0,0.0497452624026201,0,0.134840339732678,0.237584735440797,0,0,-0.0326208356201266,-0.00637612116944425,-0.00553734963626845,0.0497452624026201,0.0943736524828545,0,0.105287117455985,0,0,-0.373286155956567,0.0986485360977177,0.186212934190153,-0.147800479072036,0.00798824985747243,-0.302389727009913,-0.194478422950589,-0.443290710069734,0.126335737724048,-0.147401849371139,-0.189981719549847,0,0.109676211989179,-0.155160380969859,0.0922852429715436,-0.0932245680545911,0.077886490294275,-0.177729219185839,-0.0368000636230978,0,0.134840339732678,-0.0083251361340288,-0.278978518723253,0,-0.00258859452233762,-0.0398028033628115,0.155888240072092,0.154414947443303,-0.0793003621274675,0.407304162450514,0.315255882315608,0.191794554076046,-0.285580728286671,0.0250700841207433,0.339805595283397,0,0,0,-0.081301554390358,-0.518852217536202,-0.225540121809381,0,-0.0153689909550645,-0.0683442610773682,0,-0.0588199919062505,0.0273855702418064,0,0.171855724609924,-0.233677061099795,0,0,-0.146980923282655,0.131625741416092,0,0.38923470388395,0.0105613507146579,0.00472917388525229,0,-0.394167587043479,0.00767205948125925,-0.163756135567027,0,0.0867167192903967,0.00379176655447513,0,0.0640324431912336,0,0.0950991974896324,0.581207551163397,0.0873508165779848,0.387919957146644,0.640948336276373,-0.151684699281035,0.0767456517714823,0.00158661046145814,-0.788939864790226,0.0372131517223278,-0.0881268324752877,0,-0.789171098035526,-0.544657791888846,0.0178573764732842,-0.148196919602398,0,-0.185102057469622,0,-0.0171608867558452,0.0248726312013101,0.209463062520586,-0.27337386190212,-0.439289374580686,-0.292890335574186,0,0.340684439369054,-0.550546202333177,0,0.0727157965996366,-0.0146598972553605,0.205962528165281,0.144294018838042,-0.430636076941462,-0.0309336568376017,0.283330932178117,0,0.101802212759391,0,0,0.512604713566456,0.00210869767640837,0,-0.163976263832739,-0.158891003099434,-0.0541625474504703,0.0188692662977444,0,0,-0.0270902653149426,0,0,0.34289718393,-0.0796242644068839,0.409959176458098,-0.158952689003901,0.0248726312013101,0.0192310858296948,0,0.294661102172681,-0.127782503562556,0.0497452624026201,-0.0488180418806839,0,0,-0.182461126732485,0,0,0,0,0.0547628962005268,0,0,0,0,0,0,0,-0.216414143998632,-0.21999299048377,0,0.016602082065369,0,0.0497452624026201,0,0,0,-0.0623312395184145,0,0,-1.59233083881968,0.0571559825401968,-0.12301741567642,0.0943736524828545,0,0,0,0.287316403902782,0.0343481733460733,0.0943736524828545,0.0399930181122924,0.0943736524828545,0,0,0,-0.0363957273865912,0,0,0,0.0471868262414272,-0.00798519465104388,-0.0925594888423543,0,0,0,0.154256094625837,0,0,0,0,0.241133205927931,0,0,-0.204284197072034,0,-0.0401027966290777,0.842852061574398,0,0.26446387236041,0.0190243020175553,0.302396061337096,0,0,-0.0553846036246069,0,0,0.138884492224438,0,0.237584735440797,0.0511346814966203,0,0,0,0,0.0497452624026201,0,-0.214314512399756,0,0,0.00908449877775427,0,0,0.205962528165281,0,0,0,0,0,-0.0759147203796002,0.0021495958243441,-0.0360143283936014,0,0,0,0,0,0,0.0230808031625242,-0.0388017971337665,0,0,0,0,0,0.134840339732678,0,0,0.121045340774155,0,0,0.0248726312013101,0,0,0.0378479784900733,0,0,0,0,-0.000149165564409914,0,0,0.191246338662402,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826434421298329,-0.225561575827308,0,0,0,0,0,0,0,0.136396846467536,0,0,0,0,0.0579713509009469,0,0,0,0.500940913354871,0,0.0456444980788945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0497452624026201,0,0,0,0,0,0,0,-0.266567782282731,0,-0.439288757926751,0.0698891763299192,0,0,0.0104542816240466,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0943736524828545,0,0,0,0,0,0,-0.035926309163469,0,0,0,0,0,0,0,0.13962683917274,0,0,-0.0920328098005262,0,0,0,0,0,0,0.496653348584052,-0.13305230949908,-0.00229237939175685,0,0,0.0497452624026201,0.0485956916001853,0,0,0.0258718636619888,0.134840339732678,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431980881247668,0,0,0,0,0,-0.103577747945808,0,0,0,0,0,0,0,0,0,0,0,0,0.0248726312013101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0131754629660107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0943736524828545,0.05482187146404,0,0,0,-0.118712577174189,0,0,0,0,0,0,0.134840339732678,0,0.0497452624026201,0,0,0,0,0.067420169866339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.666594317245046,0,0,0,0,0,0,0,0.04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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 79: | ||
|rna_tube_id=111A9 | |rna_tube_id=111A9 | ||
|rna_weight_ug=145.82925 | |rna_weight_ug=145.82925 | ||
|rnaseq_library_id=RDhi10088 | |||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb9069 | |sample_cell_catalog=jcrb9069 | ||
|sample_cell_line=SW-13 | |sample_cell_line=SW-13 | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.72350304873894e-284!GO:0043231;intracellular membrane-bound organelle;1.21603043554772e-255!GO:0043227;membrane-bound organelle;2.5192603729145e-255!GO:0043226;organelle;1.99928635516904e-251!GO:0043229;intracellular organelle;5.2835231048157e-251!GO:0044422;organelle part;4.35414756249496e-179!GO:0044446;intracellular organelle part;6.41535218978251e-178!GO:0005737;cytoplasm;1.44649946892026e-168!GO:0044444;cytoplasmic part;1.53751878804819e-132!GO:0005634;nucleus;4.88210958304323e-121!GO:0032991;macromolecular complex;2.12833013505736e-118!GO:0044237;cellular metabolic process;5.58879092172616e-111!GO:0044238;primary metabolic process;1.90391942138728e-110!GO:0043170;macromolecule metabolic process;1.79927341947166e-106!GO:0030529;ribonucleoprotein complex;9.54535233858846e-97!GO:0044428;nuclear part;7.32953259393248e-95!GO:0043233;organelle lumen;9.70858682649935e-89!GO:0031974;membrane-enclosed lumen;9.70858682649935e-89!GO:0003723;RNA binding;5.99968851478755e-86!GO:0005739;mitochondrion;1.03400818158557e-76!GO:0043283;biopolymer metabolic process;6.86923349432806e-73!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.9889031205067e-69!GO:0006396;RNA processing;2.00737764964353e-63!GO:0010467;gene expression;1.17207469961246e-62!GO:0043234;protein complex;2.50638494512194e-60!GO:0031090;organelle membrane;6.4166693843526e-57!GO:0031981;nuclear lumen;1.71455390627703e-55!GO:0005840;ribosome;1.72882289810236e-53!GO:0044429;mitochondrial part;1.8693904527823e-53!GO:0005515;protein binding;2.92930001934536e-53!GO:0006259;DNA metabolic process;3.24607197987344e-52!GO:0016043;cellular component organization and biogenesis;4.18924810520208e-52!GO:0031967;organelle envelope;1.30999859473629e-49!GO:0031975;envelope;2.48162457542499e-49!GO:0006412;translation;2.67614024532305e-49!GO:0003676;nucleic acid binding;4.95045574477109e-49!GO:0016071;mRNA metabolic process;5.60566927043837e-47!GO:0003735;structural constituent of ribosome;3.11575062792353e-46!GO:0006996;organelle organization and biogenesis;6.71277717611402e-46!GO:0008380;RNA splicing;1.99330519475233e-44!GO:0033036;macromolecule localization;5.37401505001571e-44!GO:0015031;protein transport;1.41703990968984e-43!GO:0019538;protein metabolic process;9.59764382335378e-43!GO:0006397;mRNA processing;1.03678850043654e-40!GO:0033279;ribosomal subunit;3.03708136057332e-40!GO:0043228;non-membrane-bound organelle;6.17386014798851e-40!GO:0043232;intracellular non-membrane-bound organelle;6.17386014798851e-40!GO:0008104;protein localization;1.75801627957713e-39!GO:0045184;establishment of protein localization;1.10601011689502e-38!GO:0044260;cellular macromolecule metabolic process;2.45741479363913e-38!GO:0065003;macromolecular complex assembly;8.31921091200536e-38!GO:0044267;cellular protein metabolic process;1.09327883308868e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.10754193222065e-37!GO:0046907;intracellular transport;3.40205203815748e-36!GO:0044249;cellular biosynthetic process;7.23126856371849e-36!GO:0009058;biosynthetic process;8.90742937876372e-36!GO:0009059;macromolecule biosynthetic process;3.52380220968921e-35!GO:0005740;mitochondrial envelope;4.05199023944062e-35!GO:0005654;nucleoplasm;1.63404819707415e-34!GO:0005829;cytosol;2.29483291610502e-34!GO:0016070;RNA metabolic process;4.6024191752949e-34!GO:0019866;organelle inner membrane;1.03522666128405e-33!GO:0007049;cell cycle;2.60023944827055e-33!GO:0000166;nucleotide binding;2.90288125306442e-33!GO:0022607;cellular component assembly;6.12974695029573e-33!GO:0031966;mitochondrial membrane;1.60322259066296e-32!GO:0005681;spliceosome;3.44943467308711e-31!GO:0005743;mitochondrial inner membrane;1.72903168295282e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.50290922733381e-29!GO:0006886;intracellular protein transport;9.34051250325154e-29!GO:0044451;nucleoplasm part;4.2667754324812e-28!GO:0051276;chromosome organization and biogenesis;2.40888139382615e-27!GO:0022402;cell cycle process;6.22246826123115e-27!GO:0006974;response to DNA damage stimulus;1.66167286940999e-26!GO:0005694;chromosome;4.50826511071294e-26!GO:0000278;mitotic cell cycle;2.05568631038526e-25!GO:0044455;mitochondrial membrane part;5.88345380417126e-25!GO:0006281;DNA repair;8.11087536087875e-25!GO:0016462;pyrophosphatase activity;9.43878296245626e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.83678414665248e-25!GO:0044445;cytosolic part;1.09661500463299e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;1.20150571544166e-24!GO:0051649;establishment of cellular localization;1.31843951964223e-24!GO:0044427;chromosomal part;4.59688087934336e-24!GO:0017111;nucleoside-triphosphatase activity;6.47829362513848e-24!GO:0051641;cellular localization;6.57957201461844e-24!GO:0006119;oxidative phosphorylation;1.11323220436863e-23!GO:0022403;cell cycle phase;2.5109046730562e-23!GO:0032553;ribonucleotide binding;1.4201986838717e-22!GO:0032555;purine ribonucleotide binding;1.4201986838717e-22!GO:0006260;DNA replication;2.86443792866829e-22!GO:0006457;protein folding;7.10942069240626e-22!GO:0017076;purine nucleotide binding;1.07585702420113e-21!GO:0015934;large ribosomal subunit;1.22280629029856e-21!GO:0005730;nucleolus;1.36471742874102e-21!GO:0006512;ubiquitin cycle;2.24826298896301e-21!GO:0051301;cell division;2.79234448828458e-21!GO:0012505;endomembrane system;3.04031098392862e-21!GO:0000087;M phase of mitotic cell cycle;4.07809576348265e-21!GO:0005524;ATP binding;4.88205625181399e-21!GO:0022618;protein-RNA complex assembly;8.29836218817211e-21!GO:0007067;mitosis;9.35988319036326e-21!GO:0000279;M phase;1.11615393145816e-20!GO:0031980;mitochondrial lumen;1.12081361689725e-20!GO:0005759;mitochondrial matrix;1.12081361689725e-20!GO:0043285;biopolymer catabolic process;1.24167627256622e-20!GO:0006325;establishment and/or maintenance of chromatin architecture;1.49823777291429e-20!GO:0032559;adenyl ribonucleotide binding;1.80540947011857e-20!GO:0016874;ligase activity;4.10773405015794e-20!GO:0044265;cellular macromolecule catabolic process;5.65628145901677e-20!GO:0015935;small ribosomal subunit;7.9889761626195e-20!GO:0006323;DNA packaging;8.69866996646257e-20!GO:0009057;macromolecule catabolic process;2.48713843730964e-19!GO:0030554;adenyl nucleotide binding;2.49069311664108e-19!GO:0005746;mitochondrial respiratory chain;6.88765730336203e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;8.09156487042518e-19!GO:0019941;modification-dependent protein catabolic process;1.74710363037708e-18!GO:0043632;modification-dependent macromolecule catabolic process;1.74710363037708e-18!GO:0044257;cellular protein catabolic process;1.98402981415128e-18!GO:0006511;ubiquitin-dependent protein catabolic process;3.71767038022452e-18!GO:0031965;nuclear membrane;7.8853409391023e-18!GO:0030163;protein catabolic process;9.80176039747198e-18!GO:0016887;ATPase activity;1.56099185238624e-17!GO:0044453;nuclear membrane part;3.1858295502062e-17!GO:0008135;translation factor activity, nucleic acid binding;4.15309318496251e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.33873280359614e-17!GO:0042254;ribosome biogenesis and assembly;8.88285890765597e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.05177803255434e-16!GO:0003954;NADH dehydrogenase activity;1.05177803255434e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.05177803255434e-16!GO:0044432;endoplasmic reticulum part;1.96105780281942e-16!GO:0042623;ATPase activity, coupled;2.11888317360076e-16!GO:0044248;cellular catabolic process;2.11888317360076e-16!GO:0006605;protein targeting;2.50038277968606e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;3.06314568234427e-16!GO:0000375;RNA splicing, via transesterification reactions;3.06314568234427e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.06314568234427e-16!GO:0009719;response to endogenous stimulus;5.16193268451325e-16!GO:0005783;endoplasmic reticulum;6.34544631823561e-16!GO:0000502;proteasome complex (sensu Eukaryota);9.06416387192717e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.77929825003014e-15!GO:0005761;mitochondrial ribosome;2.16912877074793e-15!GO:0000313;organellar ribosome;2.16912877074793e-15!GO:0005635;nuclear envelope;2.53442399765475e-15!GO:0015630;microtubule cytoskeleton;6.37202769786213e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.06632515296581e-14!GO:0042773;ATP synthesis coupled electron transport;1.06632515296581e-14!GO:0051082;unfolded protein binding;1.4093316092815e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.57225709367065e-14!GO:0045271;respiratory chain complex I;1.57225709367065e-14!GO:0005747;mitochondrial respiratory chain complex I;1.57225709367065e-14!GO:0051186;cofactor metabolic process;1.65081736664207e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.33629106021455e-14!GO:0006399;tRNA metabolic process;7.20273515652754e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.02502039108835e-14!GO:0048193;Golgi vesicle transport;1.21475848032428e-13!GO:0005643;nuclear pore;1.25389512913129e-13!GO:0043412;biopolymer modification;1.6515100124787e-13!GO:0065004;protein-DNA complex assembly;2.07907147402745e-13!GO:0004386;helicase activity;3.94015909120722e-13!GO:0003743;translation initiation factor activity;3.97880457290097e-13!GO:0008134;transcription factor binding;4.82756784659997e-13!GO:0016604;nuclear body;4.82756784659997e-13!GO:0016568;chromatin modification;5.7939074829854e-13!GO:0050657;nucleic acid transport;5.7939074829854e-13!GO:0051236;establishment of RNA localization;5.7939074829854e-13!GO:0050658;RNA transport;5.7939074829854e-13!GO:0006403;RNA localization;6.1357355023886e-13!GO:0006413;translational initiation;1.31070856712292e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.94427728741423e-12!GO:0006333;chromatin assembly or disassembly;2.00487863180621e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.247618540561e-12!GO:0005794;Golgi apparatus;3.40920319322024e-12!GO:0008026;ATP-dependent helicase activity;5.16166710871238e-12!GO:0048770;pigment granule;6.01520915823294e-12!GO:0042470;melanosome;6.01520915823294e-12!GO:0006446;regulation of translational initiation;7.0492059603865e-12!GO:0006732;coenzyme metabolic process;1.04855333035918e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.04855333035918e-11!GO:0000785;chromatin;1.11035366901252e-11!GO:0006364;rRNA processing;1.37505914432599e-11!GO:0006163;purine nucleotide metabolic process;1.97540953952614e-11!GO:0005789;endoplasmic reticulum membrane;3.58964277518968e-11!GO:0046930;pore complex;3.63310913347648e-11!GO:0016072;rRNA metabolic process;3.78382482091724e-11!GO:0006464;protein modification process;4.80819983637885e-11!GO:0051028;mRNA transport;4.94968430906589e-11!GO:0065002;intracellular protein transport across a membrane;5.16964394573567e-11!GO:0051726;regulation of cell cycle;5.42640543527252e-11!GO:0008565;protein transporter activity;5.77254939865653e-11!GO:0000074;regulation of progression through cell cycle;5.85935066801259e-11!GO:0006913;nucleocytoplasmic transport;5.95641018539487e-11!GO:0016607;nuclear speck;6.98222233013157e-11!GO:0016192;vesicle-mediated transport;7.1688062282881e-11!GO:0006261;DNA-dependent DNA replication;7.71297304632757e-11!GO:0006164;purine nucleotide biosynthetic process;7.93552111769142e-11!GO:0009259;ribonucleotide metabolic process;1.25981423289826e-10!GO:0051169;nuclear transport;1.30146100619608e-10!GO:0009056;catabolic process;2.48491348428502e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.51562631355262e-10!GO:0008639;small protein conjugating enzyme activity;2.91129575396848e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.92619159154674e-10!GO:0043687;post-translational protein modification;3.29372628246133e-10!GO:0004842;ubiquitin-protein ligase activity;6.33605467736939e-10!GO:0016779;nucleotidyltransferase activity;9.10829431281256e-10!GO:0000775;chromosome, pericentric region;1.03606984989562e-09!GO:0019787;small conjugating protein ligase activity;1.13657810182069e-09!GO:0009150;purine ribonucleotide metabolic process;1.16728351464994e-09!GO:0005813;centrosome;1.42298955913459e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.46746549642644e-09!GO:0005815;microtubule organizing center;1.71628691458484e-09!GO:0009260;ribonucleotide biosynthetic process;1.74609205213522e-09!GO:0017038;protein import;1.84625967768593e-09!GO:0016740;transferase activity;2.39001891517573e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.39001891517573e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.39001891517573e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.39001891517573e-09!GO:0009055;electron carrier activity;2.41631218750425e-09!GO:0005819;spindle;3.29934408310062e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.62187139923953e-09!GO:0006461;protein complex assembly;3.77720304860399e-09!GO:0016881;acid-amino acid ligase activity;3.88160346658057e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.95747246090595e-09!GO:0003697;single-stranded DNA binding;5.34427132611435e-09!GO:0006334;nucleosome assembly;5.88656640893057e-09!GO:0043566;structure-specific DNA binding;7.10280797326514e-09!GO:0043038;amino acid activation;7.86262014709336e-09!GO:0006418;tRNA aminoacylation for protein translation;7.86262014709336e-09!GO:0043039;tRNA aminoacylation;7.86262014709336e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.25104080558185e-09!GO:0019222;regulation of metabolic process;1.50323903357258e-08!GO:0031497;chromatin assembly;1.69778309046666e-08!GO:0015986;ATP synthesis coupled proton transport;2.24704703352575e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.24704703352575e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.31124516694947e-08!GO:0009060;aerobic respiration;2.45736145572825e-08!GO:0003712;transcription cofactor activity;2.73730378953023e-08!GO:0009141;nucleoside triphosphate metabolic process;2.87050653149782e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.58659225279037e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.58659225279037e-08!GO:0051188;cofactor biosynthetic process;3.61905711464114e-08!GO:0005667;transcription factor complex;4.29727034567399e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.56113284766274e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.56113284766274e-08!GO:0000245;spliceosome assembly;5.08595309600327e-08!GO:0003899;DNA-directed RNA polymerase activity;5.86276883894493e-08!GO:0007005;mitochondrion organization and biogenesis;5.95749464320087e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.06962780373392e-08!GO:0007051;spindle organization and biogenesis;7.03998737155688e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.34764260891276e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.34764260891276e-08!GO:0019829;cation-transporting ATPase activity;7.90189969029619e-08!GO:0016787;hydrolase activity;8.72591788260976e-08!GO:0005788;endoplasmic reticulum lumen;8.84829807046673e-08!GO:0005793;ER-Golgi intermediate compartment;1.01433511938056e-07!GO:0032446;protein modification by small protein conjugation;1.02472222121923e-07!GO:0005768;endosome;1.3363651845749e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.45196738569234e-07!GO:0006350;transcription;1.61310388796291e-07!GO:0006366;transcription from RNA polymerase II promoter;2.06631125536129e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.0870431152028e-07!GO:0046034;ATP metabolic process;2.09929454079358e-07!GO:0000075;cell cycle checkpoint;2.36548089569577e-07!GO:0051329;interphase of mitotic cell cycle;2.37638219899709e-07!GO:0006754;ATP biosynthetic process;2.6019548477457e-07!GO:0006753;nucleoside phosphate metabolic process;2.6019548477457e-07!GO:0016567;protein ubiquitination;2.66253616940559e-07!GO:0044431;Golgi apparatus part;2.82687000664865e-07!GO:0045333;cellular respiration;3.09653861987264e-07!GO:0008094;DNA-dependent ATPase activity;3.26456873599721e-07!GO:0006099;tricarboxylic acid cycle;3.5607311520482e-07!GO:0046356;acetyl-CoA catabolic process;3.5607311520482e-07!GO:0045259;proton-transporting ATP synthase complex;3.65458901529158e-07!GO:0005657;replication fork;3.79306876644827e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.87331544180813e-07!GO:0006084;acetyl-CoA metabolic process;5.25891146878753e-07!GO:0043623;cellular protein complex assembly;5.99977725588575e-07!GO:0031323;regulation of cellular metabolic process;7.53432063403521e-07!GO:0000151;ubiquitin ligase complex;7.73177613419553e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.11218812678818e-07!GO:0044440;endosomal part;9.38296205632766e-07!GO:0010008;endosome membrane;9.38296205632766e-07!GO:0050794;regulation of cellular process;1.12786380195984e-06!GO:0051325;interphase;1.1877780545838e-06!GO:0016859;cis-trans isomerase activity;1.22552328376058e-06!GO:0003724;RNA helicase activity;1.39866998596991e-06!GO:0006752;group transfer coenzyme metabolic process;1.54182992830696e-06!GO:0048475;coated membrane;1.60402549825976e-06!GO:0030117;membrane coat;1.60402549825976e-06!GO:0009108;coenzyme biosynthetic process;1.61665846331537e-06!GO:0005874;microtubule;2.02561877897818e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.06180399491875e-06!GO:0030120;vesicle coat;2.6509202855312e-06!GO:0030662;coated vesicle membrane;2.6509202855312e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.04330743414509e-06!GO:0009117;nucleotide metabolic process;3.50550061318188e-06!GO:0009109;coenzyme catabolic process;4.14114335108811e-06!GO:0003677;DNA binding;4.22467904007951e-06!GO:0008033;tRNA processing;4.22467904007951e-06!GO:0008654;phospholipid biosynthetic process;4.37300408755945e-06!GO:0010468;regulation of gene expression;6.47319585896315e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.42242016596162e-06!GO:0006606;protein import into nucleus;8.54855364982872e-06!GO:0051187;cofactor catabolic process;8.54855364982872e-06!GO:0006414;translational elongation;1.05051840069971e-05!GO:0051170;nuclear import;1.06380503726871e-05!GO:0006613;cotranslational protein targeting to membrane;1.32235122413131e-05!GO:0016853;isomerase activity;1.37367671699891e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.44003764307598e-05!GO:0005762;mitochondrial large ribosomal subunit;1.45438029325944e-05!GO:0000315;organellar large ribosomal subunit;1.45438029325944e-05!GO:0003682;chromatin binding;1.45755798296313e-05!GO:0007017;microtubule-based process;1.73480757768716e-05!GO:0000139;Golgi membrane;1.73480757768716e-05!GO:0032774;RNA biosynthetic process;1.79274700390457e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.80754026283799e-05!GO:0006352;transcription initiation;2.17550594990159e-05!GO:0007059;chromosome segregation;2.18159742482643e-05!GO:0006302;double-strand break repair;2.34572903596113e-05!GO:0006839;mitochondrial transport;2.38243836811599e-05!GO:0006351;transcription, DNA-dependent;2.39686788908917e-05!GO:0005798;Golgi-associated vesicle;2.4338897359282e-05!GO:0006310;DNA recombination;2.47729197354894e-05!GO:0006383;transcription from RNA polymerase III promoter;3.31400144172817e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.42412576566136e-05!GO:0006793;phosphorus metabolic process;3.78674818504291e-05!GO:0006796;phosphate metabolic process;3.78674818504291e-05!GO:0043681;protein import into mitochondrion;3.95923855523058e-05!GO:0044452;nucleolar part;3.96436630939109e-05!GO:0005770;late endosome;4.09673917003035e-05!GO:0016741;transferase activity, transferring one-carbon groups;4.53506995459164e-05!GO:0016564;transcription repressor activity;4.62879807491818e-05!GO:0003684;damaged DNA binding;4.78324035645548e-05!GO:0000776;kinetochore;5.27227301831166e-05!GO:0051168;nuclear export;5.29804661645717e-05!GO:0004298;threonine endopeptidase activity;5.76103188566903e-05!GO:0008168;methyltransferase activity;6.06262435104013e-05!GO:0016363;nuclear matrix;6.09853653359854e-05!GO:0000314;organellar small ribosomal subunit;6.62542542369483e-05!GO:0005763;mitochondrial small ribosomal subunit;6.62542542369483e-05!GO:0000059;protein import into nucleus, docking;6.72515576887336e-05!GO:0043021;ribonucleoprotein binding;7.00293991428072e-05!GO:0008186;RNA-dependent ATPase activity;7.218303860498e-05!GO:0003924;GTPase activity;7.52237384258315e-05!GO:0003729;mRNA binding;7.80226745122408e-05!GO:0007052;mitotic spindle organization and biogenesis;8.46721941388839e-05!GO:0016310;phosphorylation;8.59268731952948e-05!GO:0046474;glycerophospholipid biosynthetic process;8.68228953601765e-05!GO:0015631;tubulin binding;8.76426679451973e-05!GO:0005769;early endosome;9.94148055532502e-05!GO:0051427;hormone receptor binding;9.94859264642293e-05!GO:0005773;vacuole;0.000101871858083583!GO:0045786;negative regulation of progression through cell cycle;0.000102345718669588!GO:0005525;GTP binding;0.000106232949053012!GO:0003690;double-stranded DNA binding;0.000112293031336895!GO:0045454;cell redox homeostasis;0.000133583069926626!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000137819508993845!GO:0006626;protein targeting to mitochondrion;0.00014775939398525!GO:0007093;mitotic cell cycle checkpoint;0.000154268958302517!GO:0051246;regulation of protein metabolic process;0.000158480428105634!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000168817166268061!GO:0015399;primary active transmembrane transporter activity;0.000168817166268061!GO:0005637;nuclear inner membrane;0.000170410969667315!GO:0046489;phosphoinositide biosynthetic process;0.000170498540730832!GO:0015980;energy derivation by oxidation of organic compounds;0.000201631568930492!GO:0004004;ATP-dependent RNA helicase activity;0.000211210970473582!GO:0035257;nuclear hormone receptor binding;0.000214058376726298!GO:0012501;programmed cell death;0.000224559221906029!GO:0016023;cytoplasmic membrane-bound vesicle;0.000232505094971166!GO:0031988;membrane-bound vesicle;0.000260089150457305!GO:0006338;chromatin remodeling;0.000264067665334841!GO:0019867;outer membrane;0.000272292211836222!GO:0030027;lamellipodium;0.000273954208481884!GO:0045449;regulation of transcription;0.000278098175323874!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000281404349017434!GO:0006915;apoptosis;0.000284324863235798!GO:0031968;organelle outer membrane;0.000293094826325503!GO:0006612;protein targeting to membrane;0.000294624982244689!GO:0007088;regulation of mitosis;0.000321717649978265!GO:0007006;mitochondrial membrane organization and biogenesis;0.000322077306680794!GO:0016563;transcription activator activity;0.000327856544629566!GO:0005876;spindle microtubule;0.000330006165784344!GO:0003678;DNA helicase activity;0.000340066315110868!GO:0008250;oligosaccharyl transferase complex;0.000340310842571604!GO:0000922;spindle pole;0.000346827201666348!GO:0000228;nuclear chromosome;0.000375369059493844!GO:0000323;lytic vacuole;0.000408425663847535!GO:0005764;lysosome;0.000408425663847535!GO:0043284;biopolymer biosynthetic process;0.000430651867500692!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000438631656779644!GO:0000786;nucleosome;0.000441155409690546!GO:0003713;transcription coactivator activity;0.000442925103076081!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000443549869905748!GO:0005048;signal sequence binding;0.00046497250855565!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000476218174646125!GO:0044454;nuclear chromosome part;0.000498680071648969!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000545898357676741!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000557193226205165!GO:0004518;nuclease activity;0.000568666777358119!GO:0031324;negative regulation of cellular metabolic process;0.000597923960629885!GO:0051052;regulation of DNA metabolic process;0.000610115827667907!GO:0005885;Arp2/3 protein complex;0.000611837818776165!GO:0051920;peroxiredoxin activity;0.000624371428746821!GO:0000082;G1/S transition of mitotic cell cycle;0.000626658546931425!GO:0030880;RNA polymerase complex;0.000655030119762062!GO:0032508;DNA duplex unwinding;0.000655030119762062!GO:0032392;DNA geometric change;0.000655030119762062!GO:0008017;microtubule binding;0.000663930747826483!GO:0051540;metal cluster binding;0.000664624042537636!GO:0051536;iron-sulfur cluster binding;0.000664624042537636!GO:0005684;U2-dependent spliceosome;0.000665126628958262!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000667261362560448!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000667774377654506!GO:0009165;nucleotide biosynthetic process;0.000684406468017392!GO:0009112;nucleobase metabolic process;0.000696067874159487!GO:0006091;generation of precursor metabolites and energy;0.000705426381662708!GO:0003711;transcription elongation regulator activity;0.000719118305845116!GO:0050789;regulation of biological process;0.000723419511283603!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000739227328319252!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000739227328319252!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000739227328319252!GO:0008219;cell death;0.000740292136637116!GO:0016265;death;0.000740292136637116!GO:0004576;oligosaccharyl transferase activity;0.000757750376370835!GO:0007010;cytoskeleton organization and biogenesis;0.000770852648714735!GO:0006284;base-excision repair;0.000775491068410574!GO:0016491;oxidoreductase activity;0.000835754223074514!GO:0006402;mRNA catabolic process;0.000846052990633709!GO:0032200;telomere organization and biogenesis;0.000846052990633709!GO:0000723;telomere maintenance;0.000846052990633709!GO:0030867;rough endoplasmic reticulum membrane;0.000867654137792495!GO:0006650;glycerophospholipid metabolic process;0.00092082325271194!GO:0031252;leading edge;0.000975896735157449!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0010288527770145!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0010288527770145!GO:0018196;peptidyl-asparagine modification;0.00104282196825867!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00104282196825867!GO:0033116;ER-Golgi intermediate compartment membrane;0.00107841025997035!GO:0006289;nucleotide-excision repair;0.00109621920479498!GO:0006818;hydrogen transport;0.00110615563675379!GO:0031982;vesicle;0.0011259961947743!GO:0003714;transcription corepressor activity;0.00113386196881839!GO:0016251;general RNA polymerase II transcription factor activity;0.00114926310792775!GO:0006497;protein amino acid lipidation;0.00116733161052753!GO:0043492;ATPase activity, coupled to movement of substances;0.00116907812698335!GO:0005741;mitochondrial outer membrane;0.00122350866462396!GO:0031410;cytoplasmic vesicle;0.00126840810686659!GO:0031072;heat shock protein binding;0.00128312132736444!GO:0032561;guanyl ribonucleotide binding;0.00132466228538022!GO:0019001;guanyl nucleotide binding;0.00132466228538022!GO:0006505;GPI anchor metabolic process;0.00134664009411698!GO:0006268;DNA unwinding during replication;0.00134999801202931!GO:0043596;nuclear replication fork;0.00136222563530495!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00137129044290532!GO:0006401;RNA catabolic process;0.00138869472494901!GO:0006506;GPI anchor biosynthetic process;0.00138869472494901!GO:0015992;proton transport;0.00139805332245597!GO:0006270;DNA replication initiation;0.0014171313847443!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00144750404761606!GO:0000428;DNA-directed RNA polymerase complex;0.00144750404761606!GO:0006695;cholesterol biosynthetic process;0.0014702292266664!GO:0046467;membrane lipid biosynthetic process;0.00148924817315496!GO:0005758;mitochondrial intermembrane space;0.00150107735608133!GO:0030384;phosphoinositide metabolic process;0.00151512489597469!GO:0016126;sterol biosynthetic process;0.00151683322520773!GO:0006144;purine base metabolic process;0.00153873100201117!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00155246585991976!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00156544446478059!GO:0046483;heterocycle metabolic process;0.00158255899746056!GO:0004674;protein serine/threonine kinase activity;0.00160317114901886!GO:0019843;rRNA binding;0.00160905398190414!GO:0046519;sphingoid metabolic process;0.00160976985764168!GO:0006672;ceramide metabolic process;0.00165399282271761!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00167316222247517!GO:0016481;negative regulation of transcription;0.0017652823955211!GO:0005875;microtubule associated complex;0.00179997194747896!GO:0005669;transcription factor TFIID complex;0.00181421975074341!GO:0006355;regulation of transcription, DNA-dependent;0.00183003532508795!GO:0051539;4 iron, 4 sulfur cluster binding;0.00185340228000155!GO:0031124;mRNA 3'-end processing;0.00188662274753721!GO:0048500;signal recognition particle;0.00200633613222556!GO:0045045;secretory pathway;0.00212139062972545!GO:0042158;lipoprotein biosynthetic process;0.00215175308443073!GO:0006405;RNA export from nucleus;0.00225491305139353!GO:0019899;enzyme binding;0.00226534268122538!GO:0006611;protein export from nucleus;0.00227130297302758!GO:0043624;cellular protein complex disassembly;0.00229499678048997!GO:0030658;transport vesicle membrane;0.00231111089639269!GO:0004527;exonuclease activity;0.00241765247348505!GO:0016272;prefoldin complex;0.00251717459475431!GO:0006378;mRNA polyadenylation;0.00259218204340386!GO:0051087;chaperone binding;0.00260903278326959!GO:0000792;heterochromatin;0.00262404593298325!GO:0051252;regulation of RNA metabolic process;0.00266311197858723!GO:0048471;perinuclear region of cytoplasm;0.0027006542899262!GO:0000910;cytokinesis;0.00292465007340202!GO:0006891;intra-Golgi vesicle-mediated transport;0.00293560508368739!GO:0044262;cellular carbohydrate metabolic process;0.00302820113015819!GO:0043601;nuclear replisome;0.00302820113015819!GO:0030894;replisome;0.00302820113015819!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00304105536414551!GO:0031970;organelle envelope lumen;0.00312688639734973!GO:0009892;negative regulation of metabolic process;0.00315121583019134!GO:0006740;NADPH regeneration;0.00325170373384528!GO:0006098;pentose-phosphate shunt;0.00325170373384528!GO:0000781;chromosome, telomeric region;0.0032855342941371!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00332407151212352!GO:0030118;clathrin coat;0.00337001966519356!GO:0051789;response to protein stimulus;0.00343799698234612!GO:0006986;response to unfolded protein;0.00343799698234612!GO:0016585;chromatin remodeling complex;0.00346136377461995!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00350216667674324!GO:0015002;heme-copper terminal oxidase activity;0.00350216667674324!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00350216667674324!GO:0004129;cytochrome-c oxidase activity;0.00350216667674324!GO:0003887;DNA-directed DNA polymerase activity;0.00352213972757616!GO:0000287;magnesium ion binding;0.00407100690469946!GO:0008287;protein serine/threonine phosphatase complex;0.00421609035357939!GO:0000793;condensed chromosome;0.00424879155029736!GO:0008312;7S RNA binding;0.00427231395357938!GO:0016790;thiolester hydrolase activity;0.00433450001318936!GO:0000339;RNA cap binding;0.00433450001318936!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00435049445177645!GO:0030660;Golgi-associated vesicle membrane;0.00437672937262904!GO:0042393;histone binding;0.00439612811658556!GO:0005905;coated pit;0.00464559758610014!GO:0000049;tRNA binding;0.00470760506058035!GO:0000819;sister chromatid segregation;0.00470760506058035!GO:0033673;negative regulation of kinase activity;0.00474160349832147!GO:0006469;negative regulation of protein kinase activity;0.00474160349832147!GO:0009451;RNA modification;0.00486713738373793!GO:0044450;microtubule organizing center part;0.00513182113894218!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00515312950012709!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00531100661469094!GO:0045047;protein targeting to ER;0.00531100661469094!GO:0009303;rRNA transcription;0.00531100661469094!GO:0019783;small conjugating protein-specific protease activity;0.00532518936219703!GO:0043488;regulation of mRNA stability;0.0054469996456054!GO:0043487;regulation of RNA stability;0.0054469996456054!GO:0008022;protein C-terminus binding;0.00557003684571199!GO:0000070;mitotic sister chromatid segregation;0.00562347008311966!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00570389743999616!GO:0051348;negative regulation of transferase activity;0.00576501624034534!GO:0032259;methylation;0.00576592421418306!GO:0000725;recombinational repair;0.00581823709753556!GO:0000724;double-strand break repair via homologous recombination;0.00581823709753556!GO:0006595;polyamine metabolic process;0.00581823709753556!GO:0032984;macromolecular complex disassembly;0.00581823709753556!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00584584772212004!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00617326656916259!GO:0007004;telomere maintenance via telomerase;0.00625163722881286!GO:0030663;COPI coated vesicle membrane;0.00644765450881603!GO:0030126;COPI vesicle coat;0.00644765450881603!GO:0030137;COPI-coated vesicle;0.00651512770199463!GO:0005869;dynactin complex;0.00676786842403913!GO:0030134;ER to Golgi transport vesicle;0.00686279148844975!GO:0043241;protein complex disassembly;0.00704774101096396!GO:0043189;H4/H2A histone acetyltransferase complex;0.00725652437823058!GO:0004843;ubiquitin-specific protease activity;0.00737386468476292!GO:0046112;nucleobase biosynthetic process;0.00740480490163054!GO:0016407;acetyltransferase activity;0.00744191856609675!GO:0009116;nucleoside metabolic process;0.00760034636498242!GO:0031123;RNA 3'-end processing;0.00802968388711331!GO:0022890;inorganic cation transmembrane transporter activity;0.00805226966444522!GO:0006607;NLS-bearing substrate import into nucleus;0.00821893044794245!GO:0031577;spindle checkpoint;0.00821893044794245!GO:0022406;membrane docking;0.00857586922878573!GO:0048278;vesicle docking;0.00857586922878573!GO:0000209;protein polyubiquitination;0.0088047849444178!GO:0030119;AP-type membrane coat adaptor complex;0.00890659097999415!GO:0048487;beta-tubulin binding;0.00892996948532632!GO:0005832;chaperonin-containing T-complex;0.00902465810874632!GO:0006916;anti-apoptosis;0.00914227486002001!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00916901772809265!GO:0003702;RNA polymerase II transcription factor activity;0.00917004571670986!GO:0031902;late endosome membrane;0.00922055608496609!GO:0008139;nuclear localization sequence binding;0.00922055608496609!GO:0008276;protein methyltransferase activity;0.00967013461253733!GO:0003746;translation elongation factor activity;0.00968638996185362!GO:0043407;negative regulation of MAP kinase activity;0.00969106502907074!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00974281223332545!GO:0004221;ubiquitin thiolesterase activity;0.010244637077531!GO:0008180;signalosome;0.0103330204055221!GO:0000123;histone acetyltransferase complex;0.0103822689234211!GO:0016044;membrane organization and biogenesis;0.0106113061376408!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0106117014106449!GO:0043414;biopolymer methylation;0.0108574343737063!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0109706156031862!GO:0008415;acyltransferase activity;0.0112503529498911!GO:0043130;ubiquitin binding;0.0114876929408328!GO:0032182;small conjugating protein binding;0.0114876929408328!GO:0004722;protein serine/threonine phosphatase activity;0.0116093402253199!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0116898727142817!GO:0030131;clathrin adaptor complex;0.0119532925391586!GO:0035267;NuA4 histone acetyltransferase complex;0.0119532925391586!GO:0000152;nuclear ubiquitin ligase complex;0.0120754141341264!GO:0004003;ATP-dependent DNA helicase activity;0.0121007759476222!GO:0030521;androgen receptor signaling pathway;0.0129927677821505!GO:0000096;sulfur amino acid metabolic process;0.0132521278737577!GO:0006278;RNA-dependent DNA replication;0.0132646588554832!GO:0006376;mRNA splice site selection;0.0135817443674798!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0135817443674798!GO:0000118;histone deacetylase complex;0.0136812242270444!GO:0030133;transport vesicle;0.0140670184580903!GO:0043631;RNA polyadenylation;0.0141499853381398!GO:0030176;integral to endoplasmic reticulum membrane;0.0146387227918429!GO:0030127;COPII vesicle coat;0.0147833800337155!GO:0012507;ER to Golgi transport vesicle membrane;0.0147833800337155!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0148516754291064!GO:0007021;tubulin folding;0.0149728635640038!GO:0006275;regulation of DNA replication;0.0151406896546511!GO:0030132;clathrin coat of coated pit;0.0159706620926257!GO:0016746;transferase activity, transferring acyl groups;0.0160287799675866!GO:0022411;cellular component disassembly;0.0160466930818141!GO:0006220;pyrimidine nucleotide metabolic process;0.0165081874668861!GO:0006400;tRNA modification;0.0165146145718406!GO:0006904;vesicle docking during exocytosis;0.0167406515170982!GO:0006509;membrane protein ectodomain proteolysis;0.0174451015721166!GO:0033619;membrane protein proteolysis;0.0174451015721166!GO:0017166;vinculin binding;0.0176183408129258!GO:0043022;ribosome binding;0.0179009736684024!GO:0008601;protein phosphatase type 2A regulator activity;0.0181570399908371!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0182372059388692!GO:0045039;protein import into mitochondrial inner membrane;0.0182372059388692!GO:0031570;DNA integrity checkpoint;0.0183389008392268!GO:0031625;ubiquitin protein ligase binding;0.0184659816772702!GO:0050662;coenzyme binding;0.019087609562935!GO:0008610;lipid biosynthetic process;0.0193839013423546!GO:0031371;ubiquitin conjugating enzyme complex;0.0199014930922548!GO:0007050;cell cycle arrest;0.0201448362988189!GO:0005774;vacuolar membrane;0.0203744656917403!GO:0007040;lysosome organization and biogenesis;0.020444498782555!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0208644788864135!GO:0048523;negative regulation of cellular process;0.021346064247171!GO:0044438;microbody part;0.0216687963955678!GO:0044439;peroxisomal part;0.0216687963955678!GO:0042026;protein refolding;0.0220611967218302!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228200007120096!GO:0007034;vacuolar transport;0.0228456727949754!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0228952304552366!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0230433350053626!GO:0006643;membrane lipid metabolic process;0.0233082592105895!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0233190369399829!GO:0005663;DNA replication factor C complex;0.0234517044224977!GO:0017134;fibroblast growth factor binding;0.0234517044224977!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0240382757195203!GO:0030508;thiol-disulfide exchange intermediate activity;0.0241182819813003!GO:0008536;Ran GTPase binding;0.0243361315259629!GO:0000159;protein phosphatase type 2A complex;0.0253012551372995!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0254551655854332!GO:0005791;rough endoplasmic reticulum;0.0257110367919261!GO:0035258;steroid hormone receptor binding;0.0259790490898019!GO:0000178;exosome (RNase complex);0.0259790490898019!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0260378057787634!GO:0010257;NADH dehydrogenase complex assembly;0.0260378057787634!GO:0033108;mitochondrial respiratory chain complex assembly;0.0260378057787634!GO:0016569;covalent chromatin modification;0.0263117938351508!GO:0006007;glucose catabolic process;0.0265567677475832!GO:0005652;nuclear lamina;0.0267017157931048!GO:0009124;nucleoside monophosphate biosynthetic process;0.0268296035955784!GO:0009123;nucleoside monophosphate metabolic process;0.0268296035955784!GO:0000726;non-recombinational repair;0.0270205711913493!GO:0005862;muscle thin filament tropomyosin;0.0274774081318014!GO:0008097;5S rRNA binding;0.0278165508274172!GO:0005784;translocon complex;0.0284770876731735!GO:0065009;regulation of a molecular function;0.0289677070251602!GO:0030911;TPR domain binding;0.0295385114451706!GO:0040029;regulation of gene expression, epigenetic;0.0296956419617286!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0306160261443059!GO:0003756;protein disulfide isomerase activity;0.0306294646179789!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0306294646179789!GO:0031461;cullin-RING ubiquitin ligase complex;0.0311788466163332!GO:0042981;regulation of apoptosis;0.0311788466163332!GO:0006301;postreplication repair;0.0312233214132909!GO:0030149;sphingolipid catabolic process;0.0315404514526247!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0316247284507276!GO:0043067;regulation of programmed cell death;0.0316247284507276!GO:0000790;nuclear chromatin;0.0318547451735789!GO:0043069;negative regulation of programmed cell death;0.0319215423432823!GO:0030125;clathrin vesicle coat;0.0319734986719518!GO:0030665;clathrin coated vesicle membrane;0.0319734986719518!GO:0030145;manganese ion binding;0.0322917777277334!GO:0005938;cell cortex;0.0323274962311098!GO:0004532;exoribonuclease activity;0.0323483220560008!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0323483220560008!GO:0031903;microbody membrane;0.0325395825579328!GO:0005778;peroxisomal membrane;0.0325395825579328!GO:0006360;transcription from RNA polymerase I promoter;0.0327873493104736!GO:0051656;establishment of organelle localization;0.0331158264798966!GO:0006892;post-Golgi vesicle-mediated transport;0.0331196182554361!GO:0005881;cytoplasmic microtubule;0.0333350224444515!GO:0016581;NuRD complex;0.0348897884914952!GO:0006779;porphyrin biosynthetic process;0.0348897884914952!GO:0033014;tetrapyrrole biosynthetic process;0.0348897884914952!GO:0051297;centrosome organization and biogenesis;0.0353560495816877!GO:0031023;microtubule organizing center organization and biogenesis;0.0353560495816877!GO:0008143;poly(A) binding;0.0355352280427799!GO:0043066;negative regulation of apoptosis;0.0362471490730321!GO:0008234;cysteine-type peptidase activity;0.0362784108874057!GO:0009066;aspartate family amino acid metabolic process;0.0362784108874057!GO:0007264;small GTPase mediated signal transduction;0.0367741731641746!GO:0006778;porphyrin metabolic process;0.0369308943887029!GO:0033013;tetrapyrrole metabolic process;0.0369308943887029!GO:0042769;DNA damage response, detection of DNA damage;0.03731127307014!GO:0031901;early endosome membrane;0.0378195354775206!GO:0008408;3'-5' exonuclease activity;0.0380363644913157!GO:0009113;purine base biosynthetic process;0.038651131986348!GO:0044437;vacuolar part;0.0392941877154231!GO:0007033;vacuole organization and biogenesis;0.0393844134654638!GO:0009067;aspartate family amino acid biosynthetic process;0.0394203758854156!GO:0019377;glycolipid catabolic process;0.0397979871690082!GO:0046966;thyroid hormone receptor binding;0.0399089617592425!GO:0008538;proteasome activator activity;0.039910577732443!GO:0004523;ribonuclease H activity;0.0407240720887484!GO:0004526;ribonuclease P activity;0.0407969841051422!GO:0045815;positive regulation of gene expression, epigenetic;0.0417941972166758!GO:0019318;hexose metabolic process;0.0422551117844904!GO:0016408;C-acyltransferase activity;0.0425329761074243!GO:0005801;cis-Golgi network;0.0429312309473624!GO:0006730;one-carbon compound metabolic process;0.0447900133348555!GO:0005996;monosaccharide metabolic process;0.0448833142605237!GO:0032039;integrator complex;0.0454374905658451!GO:0003923;GPI-anchor transamidase activity;0.0454374905658451!GO:0016255;attachment of GPI anchor to protein;0.0454374905658451!GO:0042765;GPI-anchor transamidase complex;0.0454374905658451!GO:0009081;branched chain family amino acid metabolic process;0.0458200234463028!GO:0004239;methionyl aminopeptidase activity;0.0458497482804385!GO:0015036;disulfide oxidoreductase activity;0.045938908403812!GO:0009083;branched chain family amino acid catabolic process;0.0465540663578983!GO:0016570;histone modification;0.046819130523173!GO:0006308;DNA catabolic process;0.0468611242557575!GO:0009161;ribonucleoside monophosphate metabolic process;0.0470663596096699!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0470663596096699!GO:0004549;tRNA-specific ribonuclease activity;0.0473877185256716!GO:0051287;NAD binding;0.0475435933579894!GO:0031628;opioid receptor binding;0.0478970101166621!GO:0031852;mu-type opioid receptor binding;0.0478970101166621!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0491323913885651!GO:0008270;zinc ion binding;0.0491575090011918!GO:0046128;purine ribonucleoside metabolic process;0.0491575090011918!GO:0042278;purine nucleoside metabolic process;0.0491575090011918!GO:0051640;organelle localization;0.0494229979064771!GO:0000030;mannosyltransferase activity;0.049697239016911 | |||
|sample_id=10810 | |sample_id=10810 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 102: | ||
|sample_tissue=adrenal gland | |sample_tissue=adrenal gland | ||
|top_motifs=NRF1:2.27862748454;ELK1,4_GABP{A,B1}:1.985631442;CRX:1.7582384136;PPARG:1.71771821788;ZNF143:1.66885138691;NANOG:1.59145877697;NFY{A,B,C}:1.48400984147;VSX1,2:1.4415073775;GFI1:1.42292769238;PAX8:1.33369678592;E2F1..5:1.27153384789;TFDP1:1.22193738226;ALX1:1.21437588511;NKX2-3_NKX2-5:1.13734680921;PAX4:1.03704747859;POU1F1:1.00782782659;PBX1:1.0006606723;STAT1,3:0.989935733115;PAX1,9:0.971228801936;HOX{A6,A7,B6,B7}:0.940686148101;ONECUT1,2:0.924556431255;RFX1:0.842219889962;LHX3,4:0.794525910687;NKX6-1,2:0.779049531738;AIRE:0.712896675565;MYB:0.687919078819;ARID5B:0.666041896853;SOX17:0.665622536125;FOXQ1:0.650281064083;HOX{A4,D4}:0.62747508164;YY1:0.609377861381;HIC1:0.575928284826;BREu{core}:0.527811037255;EVI1:0.52740722478;HOX{A5,B5}:0.521647003832;T:0.51258467067;OCT4_SOX2{dimer}:0.508162970826;RBPJ:0.504747158101;TEF:0.479186654898;GATA6:0.422979278139;PRRX1,2:0.412242125126;FOX{I1,J2}:0.393944226519;SOX{8,9,10}:0.369738148203;CDX1,2,4:0.34717279035;STAT5{A,B}:0.341224537571;HMGA1,2:0.340026803484;ZNF384:0.324903456898;FOXM1:0.315842855118;PAX3,7:0.31193649109;EN1,2:0.287810239912;LEF1_TCF7_TCF7L1,2:0.238259655838;NR5A1,2:0.23599108503;NR6A1:0.232352583208;PITX1..3:0.230534913895;ADNP_IRX_SIX_ZHX:0.20503996838;HNF4A_NR2F1,2:0.201895179425;HBP1_HMGB_SSRP1_UBTF:0.195633473582;HSF1,2:0.19375550215;ZFP161:0.193192537261;CUX2:0.178879855849;IKZF1:0.163349275795;IKZF2:0.15612287272;ZEB1:0.122591524536;SP1:0.101966626926;POU6F1:0.0815153974945;POU2F1..3:0.0708605350342;KLF4:0.024201833253;HAND1,2:0.0238503015365;FOXA2:0.0234841442728;SREBF1,2:0.0193419295879;GCM1,2:0.0191830657247;ATF5_CREB3:0.0181135623924;EGR1..3:0.00705710380978;REST:-0.0127749997867;GFI1B:-0.0308193546161;DMAP1_NCOR{1,2}_SMARC:-0.0338030648298;FOXP3:-0.034142922726;FOXN1:-0.0351303595437;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0472635458934;TFAP2B:-0.0666832776353;GTF2A1,2:-0.0669982645724;FOXP1:-0.0917479459679;TEAD1:-0.100222540673;ESRRA:-0.137829752094;CREB1:-0.154027163687;NKX2-1,4:-0.176115219049;CDC5L:-0.188492686843;TGIF1:-0.202828175553;FOXL1:-0.202949713015;PATZ1:-0.210510669909;RORA:-0.22704028649;SNAI1..3:-0.232088131984;RUNX1..3:-0.236151959085;ZBTB16:-0.246925452666;ZBTB6:-0.250108087985;HNF1A:-0.278300423534;HOXA9_MEIS1:-0.295303419132;HES1:-0.299229777288;RREB1:-0.310055607252;LMO2:-0.311009450182;AHR_ARNT_ARNT2:-0.313463560235;MYOD1:-0.316670320503;ELF1,2,4:-0.320718485869;NKX3-2:-0.322538958081;NFKB1_REL_RELA:-0.331498011717;PDX1:-0.337506078281;DBP:-0.351429109429;NFE2L2:-0.352774883809;TP53:-0.365037590395;POU3F1..4:-0.366016290037;UFEwm:-0.376395808771;bHLH_family:-0.382753997328;SOX2:-0.402873682212;MEF2{A,B,C,D}:-0.408263600642;XBP1:-0.417406332081;RXR{A,B,G}:-0.418685953327;MZF1:-0.421304539278;RFX2..5_RFXANK_RFXAP:-0.42856818849;FOS_FOS{B,L1}_JUN{B,D}:-0.435341449237;FOSL2:-0.46819096424;PAX5:-0.488814274748;PRDM1:-0.49193060081;JUN:-0.501841414196;SRF:-0.505948888139;NFE2L1:-0.509627603754;SPIB:-0.517863626108;ATF2:-0.531757509433;PAX6:-0.534515220097;SPI1:-0.538085217915;AR:-0.553623713032;NR3C1:-0.554478689406;NANOG{mouse}:-0.556788391002;NFE2:-0.558162707072;ATF4:-0.567365997577;TOPORS:-0.568884427105;HLF:-0.569962065265;BACH2:-0.582818900429;XCPE1{core}:-0.588466373635;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.590255472496;NHLH1,2:-0.601935297364;MED-1{core}:-0.630420764188;TAL1_TCF{3,4,12}:-0.66239441003;MTE{core}:-0.674738961763;PAX2:-0.684924230513;ZIC1..3:-0.695608010784;SOX5:-0.698298079247;FOX{D1,D2}:-0.705943006118;ZNF148:-0.722138068552;GATA4:-0.724766687438;FOXD3:-0.736998487825;TLX1..3_NFIC{dimer}:-0.753965875352;ESR1:-0.757668310934;GTF2I:-0.776778810093;MYBL2:-0.783153215615;NKX3-1:-0.785376893874;POU5F1:-0.79111070154;NFIX:-0.793899730809;MTF1:-0.886437397112;ALX4:-0.891560767863;FOXO1,3,4:-0.915868690151;BPTF:-0.933167230516;ETS1,2:-0.940395531867;NFIL3:-0.941591272632;FOX{F1,F2,J1}:-0.962486661269;NKX2-2,8:-0.970981838627;IRF7:-0.974314450478;TFAP2{A,C}:-0.994624285089;MYFfamily:-1.04265004254;ZNF423:-1.06032027298;NFATC1..3:-1.0692906736;TLX2:-1.07670625323;SPZ1:-1.08479737025;GLI1..3:-1.10203362322;CEBPA,B_DDIT3:-1.13242628214;ZNF238:-1.13468500785;EP300:-1.14577049006;NR1H4:-1.17165450435;TFAP4:-1.21307014736;IRF1,2:-1.26273301411;STAT2,4,6:-1.26410828874;EBF1:-1.27638544596;MAZ:-1.29028614029;TFCP2:-1.3371682509;ATF6:-1.35026832235;HMX1:-1.35042397375;GZF1:-1.35566603468;HIF1A:-1.38977492823;SMAD1..7,9:-1.53097223013;TBP:-1.59874586588;RXRA_VDR{dimer}:-1.65517122003;MAFB:-1.73823918554;TBX4,5:-1.96209347971 | |top_motifs=NRF1:2.27862748454;ELK1,4_GABP{A,B1}:1.985631442;CRX:1.7582384136;PPARG:1.71771821788;ZNF143:1.66885138691;NANOG:1.59145877697;NFY{A,B,C}:1.48400984147;VSX1,2:1.4415073775;GFI1:1.42292769238;PAX8:1.33369678592;E2F1..5:1.27153384789;TFDP1:1.22193738226;ALX1:1.21437588511;NKX2-3_NKX2-5:1.13734680921;PAX4:1.03704747859;POU1F1:1.00782782659;PBX1:1.0006606723;STAT1,3:0.989935733115;PAX1,9:0.971228801936;HOX{A6,A7,B6,B7}:0.940686148101;ONECUT1,2:0.924556431255;RFX1:0.842219889962;LHX3,4:0.794525910687;NKX6-1,2:0.779049531738;AIRE:0.712896675565;MYB:0.687919078819;ARID5B:0.666041896853;SOX17:0.665622536125;FOXQ1:0.650281064083;HOX{A4,D4}:0.62747508164;YY1:0.609377861381;HIC1:0.575928284826;BREu{core}:0.527811037255;EVI1:0.52740722478;HOX{A5,B5}:0.521647003832;T:0.51258467067;OCT4_SOX2{dimer}:0.508162970826;RBPJ:0.504747158101;TEF:0.479186654898;GATA6:0.422979278139;PRRX1,2:0.412242125126;FOX{I1,J2}:0.393944226519;SOX{8,9,10}:0.369738148203;CDX1,2,4:0.34717279035;STAT5{A,B}:0.341224537571;HMGA1,2:0.340026803484;ZNF384:0.324903456898;FOXM1:0.315842855118;PAX3,7:0.31193649109;EN1,2:0.287810239912;LEF1_TCF7_TCF7L1,2:0.238259655838;NR5A1,2:0.23599108503;NR6A1:0.232352583208;PITX1..3:0.230534913895;ADNP_IRX_SIX_ZHX:0.20503996838;HNF4A_NR2F1,2:0.201895179425;HBP1_HMGB_SSRP1_UBTF:0.195633473582;HSF1,2:0.19375550215;ZFP161:0.193192537261;CUX2:0.178879855849;IKZF1:0.163349275795;IKZF2:0.15612287272;ZEB1:0.122591524536;SP1:0.101966626926;POU6F1:0.0815153974945;POU2F1..3:0.0708605350342;KLF4:0.024201833253;HAND1,2:0.0238503015365;FOXA2:0.0234841442728;SREBF1,2:0.0193419295879;GCM1,2:0.0191830657247;ATF5_CREB3:0.0181135623924;EGR1..3:0.00705710380978;REST:-0.0127749997867;GFI1B:-0.0308193546161;DMAP1_NCOR{1,2}_SMARC:-0.0338030648298;FOXP3:-0.034142922726;FOXN1:-0.0351303595437;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0472635458934;TFAP2B:-0.0666832776353;GTF2A1,2:-0.0669982645724;FOXP1:-0.0917479459679;TEAD1:-0.100222540673;ESRRA:-0.137829752094;CREB1:-0.154027163687;NKX2-1,4:-0.176115219049;CDC5L:-0.188492686843;TGIF1:-0.202828175553;FOXL1:-0.202949713015;PATZ1:-0.210510669909;RORA:-0.22704028649;SNAI1..3:-0.232088131984;RUNX1..3:-0.236151959085;ZBTB16:-0.246925452666;ZBTB6:-0.250108087985;HNF1A:-0.278300423534;HOXA9_MEIS1:-0.295303419132;HES1:-0.299229777288;RREB1:-0.310055607252;LMO2:-0.311009450182;AHR_ARNT_ARNT2:-0.313463560235;MYOD1:-0.316670320503;ELF1,2,4:-0.320718485869;NKX3-2:-0.322538958081;NFKB1_REL_RELA:-0.331498011717;PDX1:-0.337506078281;DBP:-0.351429109429;NFE2L2:-0.352774883809;TP53:-0.365037590395;POU3F1..4:-0.366016290037;UFEwm:-0.376395808771;bHLH_family:-0.382753997328;SOX2:-0.402873682212;MEF2{A,B,C,D}:-0.408263600642;XBP1:-0.417406332081;RXR{A,B,G}:-0.418685953327;MZF1:-0.421304539278;RFX2..5_RFXANK_RFXAP:-0.42856818849;FOS_FOS{B,L1}_JUN{B,D}:-0.435341449237;FOSL2:-0.46819096424;PAX5:-0.488814274748;PRDM1:-0.49193060081;JUN:-0.501841414196;SRF:-0.505948888139;NFE2L1:-0.509627603754;SPIB:-0.517863626108;ATF2:-0.531757509433;PAX6:-0.534515220097;SPI1:-0.538085217915;AR:-0.553623713032;NR3C1:-0.554478689406;NANOG{mouse}:-0.556788391002;NFE2:-0.558162707072;ATF4:-0.567365997577;TOPORS:-0.568884427105;HLF:-0.569962065265;BACH2:-0.582818900429;XCPE1{core}:-0.588466373635;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.590255472496;NHLH1,2:-0.601935297364;MED-1{core}:-0.630420764188;TAL1_TCF{3,4,12}:-0.66239441003;MTE{core}:-0.674738961763;PAX2:-0.684924230513;ZIC1..3:-0.695608010784;SOX5:-0.698298079247;FOX{D1,D2}:-0.705943006118;ZNF148:-0.722138068552;GATA4:-0.724766687438;FOXD3:-0.736998487825;TLX1..3_NFIC{dimer}:-0.753965875352;ESR1:-0.757668310934;GTF2I:-0.776778810093;MYBL2:-0.783153215615;NKX3-1:-0.785376893874;POU5F1:-0.79111070154;NFIX:-0.793899730809;MTF1:-0.886437397112;ALX4:-0.891560767863;FOXO1,3,4:-0.915868690151;BPTF:-0.933167230516;ETS1,2:-0.940395531867;NFIL3:-0.941591272632;FOX{F1,F2,J1}:-0.962486661269;NKX2-2,8:-0.970981838627;IRF7:-0.974314450478;TFAP2{A,C}:-0.994624285089;MYFfamily:-1.04265004254;ZNF423:-1.06032027298;NFATC1..3:-1.0692906736;TLX2:-1.07670625323;SPZ1:-1.08479737025;GLI1..3:-1.10203362322;CEBPA,B_DDIT3:-1.13242628214;ZNF238:-1.13468500785;EP300:-1.14577049006;NR1H4:-1.17165450435;TFAP4:-1.21307014736;IRF1,2:-1.26273301411;STAT2,4,6:-1.26410828874;EBF1:-1.27638544596;MAZ:-1.29028614029;TFCP2:-1.3371682509;ATF6:-1.35026832235;HMX1:-1.35042397375;GZF1:-1.35566603468;HIF1A:-1.38977492823;SMAD1..7,9:-1.53097223013;TBP:-1.59874586588;RXRA_VDR{dimer}:-1.65517122003;MAFB:-1.73823918554;TBX4,5:-1.96209347971 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10810-111A9;search_select_hide=table117:FF:10810-111A9 | |||
}} | }} | ||
Latest revision as of 15:06, 3 June 2020
| Name: | adrenal cortex adenocarcinoma cell line:SW-13 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11893 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11893
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11893
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.93 |
| 10 | 10 | 0.782 |
| 100 | 100 | 0.474 |
| 101 | 101 | 0.806 |
| 102 | 102 | 0.656 |
| 103 | 103 | 0.446 |
| 104 | 104 | 0.666 |
| 105 | 105 | 0.575 |
| 106 | 106 | 1.176e-7 |
| 107 | 107 | 0.00217 |
| 108 | 108 | 0.533 |
| 109 | 109 | 0.563 |
| 11 | 11 | 0.623 |
| 110 | 110 | 0.87 |
| 111 | 111 | 0.825 |
| 112 | 112 | 0.00651 |
| 113 | 113 | 0.0486 |
| 114 | 114 | 0.234 |
| 115 | 115 | 0.399 |
| 116 | 116 | 0.733 |
| 117 | 117 | 0.966 |
| 118 | 118 | 0.327 |
| 119 | 119 | 0.814 |
| 12 | 12 | 0.709 |
| 120 | 120 | 0.857 |
| 121 | 121 | 0.297 |
| 122 | 122 | 0.81 |
| 123 | 123 | 0.914 |
| 124 | 124 | 0.59 |
| 125 | 125 | 0.733 |
| 126 | 126 | 0.97 |
| 127 | 127 | 0.773 |
| 128 | 128 | 0.00213 |
| 129 | 129 | 0.745 |
| 13 | 13 | 0.953 |
| 130 | 130 | 0.0235 |
| 131 | 131 | 0.0316 |
| 132 | 132 | 0.585 |
| 133 | 133 | 0.117 |
| 134 | 134 | 0.0785 |
| 135 | 135 | 0.0212 |
| 136 | 136 | 0.268 |
| 137 | 137 | 0.276 |
| 138 | 138 | 0.422 |
| 139 | 139 | 0.025 |
| 14 | 14 | 0.471 |
| 140 | 140 | 0.0534 |
| 141 | 141 | 0.56 |
| 142 | 142 | 0.976 |
| 143 | 143 | 0.169 |
| 144 | 144 | 0.95 |
| 145 | 145 | 0.638 |
| 146 | 146 | 0.389 |
| 147 | 147 | 0.89 |
| 148 | 148 | 0.00466 |
| 149 | 149 | 0.0553 |
| 15 | 15 | 0.417 |
| 150 | 150 | 0.276 |
| 151 | 151 | 0.247 |
| 152 | 152 | 0.029 |
| 153 | 153 | 0.534 |
| 154 | 154 | 0.7 |
| 155 | 155 | 0.672 |
| 156 | 156 | 0.736 |
| 157 | 157 | 0.277 |
| 158 | 158 | 0.746 |
| 159 | 159 | 0.421 |
| 16 | 16 | 0.352 |
| 160 | 160 | 0.197 |
| 161 | 161 | 0.774 |
| 162 | 162 | 0.784 |
| 163 | 163 | 0.0641 |
| 164 | 164 | 0.441 |
| 165 | 165 | 0.186 |
| 166 | 166 | 0.124 |
| 167 | 167 | 0.142 |
| 168 | 168 | 0.114 |
| 169 | 169 | 0.0129 |
| 17 | 17 | 0.155 |
| 18 | 18 | 0.0719 |
| 19 | 19 | 0.072 |
| 2 | 2 | 0.0501 |
| 20 | 20 | 0.247 |
| 21 | 21 | 0.468 |
| 22 | 22 | 0.18 |
| 23 | 23 | 0.0032 |
| 24 | 24 | 0.886 |
| 25 | 25 | 0.634 |
| 26 | 26 | 0.456 |
| 27 | 27 | 0.124 |
| 28 | 28 | 0.899 |
| 29 | 29 | 0.751 |
| 3 | 3 | 0.363 |
| 30 | 30 | 0.453 |
| 31 | 31 | 0.677 |
| 32 | 32 | 0.0325 |
| 33 | 33 | 0.776 |
| 34 | 34 | 0.333 |
| 35 | 35 | 0.798 |
| 36 | 36 | 0.235 |
| 37 | 37 | 0.15 |
| 38 | 38 | 0.56 |
| 39 | 39 | 0.439 |
| 4 | 4 | 0.208 |
| 40 | 40 | 0.316 |
| 41 | 41 | 0.408 |
| 42 | 42 | 0.823 |
| 43 | 43 | 0.199 |
| 44 | 44 | 0.665 |
| 45 | 45 | 0.323 |
| 46 | 46 | 0.109 |
| 47 | 47 | 0.789 |
| 48 | 48 | 0.932 |
| 49 | 49 | 0.472 |
| 5 | 5 | 0.357 |
| 50 | 50 | 0.768 |
| 51 | 51 | 0.744 |
| 52 | 52 | 0.00476 |
| 53 | 53 | 0.351 |
| 54 | 54 | 0.603 |
| 55 | 55 | 0.766 |
| 56 | 56 | 0.577 |
| 57 | 57 | 0.978 |
| 58 | 58 | 0.142 |
| 59 | 59 | 0.0635 |
| 6 | 6 | 0.967 |
| 60 | 60 | 0.00138 |
| 61 | 61 | 0.835 |
| 62 | 62 | 0.0736 |
| 63 | 63 | 0.205 |
| 64 | 64 | 0.82 |
| 65 | 65 | 0.058 |
| 66 | 66 | 0.00976 |
| 67 | 67 | 0.806 |
| 68 | 68 | 0.039 |
| 69 | 69 | 0.72 |
| 7 | 7 | 0.787 |
| 70 | 70 | 0.338 |
| 71 | 71 | 0.163 |
| 72 | 72 | 0.181 |
| 73 | 73 | 0.177 |
| 74 | 74 | 0.435 |
| 75 | 75 | 0.862 |
| 76 | 76 | 0.714 |
| 77 | 77 | 0.0911 |
| 78 | 78 | 0.56 |
| 79 | 79 | 0.327 |
| 8 | 8 | 0.477 |
| 80 | 80 | 0.0662 |
| 81 | 81 | 0.45 |
| 82 | 82 | 0.0935 |
| 83 | 83 | 0.575 |
| 84 | 84 | 0.528 |
| 85 | 85 | 0.00418 |
| 86 | 86 | 0.427 |
| 87 | 87 | 0.667 |
| 88 | 88 | 0.614 |
| 89 | 89 | 0.28 |
| 9 | 9 | 0.0861 |
| 90 | 90 | 0.492 |
| 91 | 91 | 0.00716 |
| 92 | 92 | 0.161 |
| 93 | 93 | 0.231 |
| 94 | 94 | 0.141 |
| 95 | 95 | 0.167 |
| 96 | 96 | 0.394 |
| 97 | 97 | 0.808 |
| 98 | 98 | 0.728 |
| 99 | 99 | 0.665 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11893
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:7 disease of anatomical entity
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100167 adenocarcinoma cell line sample
UBERON:0001235 adrenal cortex
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
299 (adenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002369 (adrenal gland)
0002100 (trunk)
0001851 (cortex)
0001235 (adrenal cortex)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
