FF:11460-119B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005402 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008248;DRR009120;DRZ000545;DRZ001930;DRZ011895;DRZ013280 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000059 | |||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
|creation_date=2011-06-15T12:34:29Z | |creation_date=2011-06-15T12:34:29Z | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def="A fibroblast from cardiac tissue." [GOC:tfm] | |def="A fibroblast from cardiac tissue." [GOC:tfm] | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11460-119B2 | |id=FF:11460-119B2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000059 | ||
|is_obsolete= | |||
|library_id=CNhs12061 | |||
|library_id_phase_based=2:CNhs12061 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11460 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11460 | |||
|name=Fibroblast - Cardiac, donor6 | |name=Fibroblast - Cardiac, donor6 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12061,LSID838,release011,COMPLETED | |profile_hcage=CNhs12061,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0129806475610779,0,-0.211609965059362,0.00627640118455995,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143511350433242,0,0,0.0328760835670761,0,0,0.198876464513612,0,0,0.198315450968769,0,0,0,0,0,0,0,0,0,0,0.0657521671341522,0,0.0505504634369643,0,0,0,0.0657521671341522,0,0,0,0,-0.0242150211128343,0,0,0,0.173298677647464,0,0.00531476318255242,0.0657521671341522,-0.0969923612426051,0,0,0.0255023585863507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657521671341522,0,0,0,0,0,0,0,0,0,0,0.0724540697535252,0.109247745317055,0,0,0.060474245454452,0.0472993177897943,0,0.122845985799448,0.0328760835670761,0,0.0752633264097576,0.0431120249069599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00972425509872895,0,0,0,-0.0727088341078527,-0.348942533078003,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0752633264097576,0,0,0,0,0,0.21849549063411,0,0,0.122845985799448,0,0,-0.0738801976381004,0,0.259389626662393,-0.0777629753893197,0.061422992899724,0,-0.0506809076541147,0,0,0,0,0,0,0,0,0,0.0903756236815454,0,0.0724334342101327,0,0,0,0,0.143787278964009,-0.239720063764255,0,-0.00862204077569415,-0.0683442610773682,0,0,0,0,-0.183591330510592,0,-0.0551273166595885,-0.0827201683234173,0.21849549063411,-0.143544748993684,-0.055712496781182,0,0,0,0.19906794542233,0.344618922104305,0,0,-0.121779851751874,-0.0157135981868435,0,0,0.731487241087579,0,0.271646898623709,0.183184479752679,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308233475244047,0.00428344406866227,0,0,0,0,-0.311814372771686,0,0,0.43250296736007,0.00621186352178205,-0.0238618549744287,-0.293844807935336,0,0.456552064874899,-0.0344161666546279,0.16007891125427,-0.215677993386088,-0.0245558635716909,0.202918641256107,0.0516971396405413,0.154281907308872,0.191451843021178,-0.0377761580404803,0.0621224599387555,0.0355271876565739,0.435506231132905,-0.161050071610134,0,0,0,0.00599204933207598,0,0,0.0268787264945524,-0.0710001495875255,0.126835325156663,-0.0593950588797253,-0.0479124911510455,0.145056965115402,0.928983816546536,-0.284137775249131,0.0151416202644503,0.603417782938329,0,0,-0.000123149974687764,-0.0420118584407915,-0.123516791756711,-0.0200749326808988,0,-0.12079901039527,0.0545017247220794,0,-0.0941183892467023,0.0997302913658895,0,0,-0.185876870065458,0.0657521671341522,0,0.0312343201122285,0.0520914345877558,0,0.062603123025589,-0.242657782248497,0.0265733390355509,0,-0.0338886899066685,0.0328760835670761,0.0888015587623281,0,-0.0494021934889537,0,0,-0.208529662577061,0,0.0570485436684001,0.171100993163836,0.00830798130846122,0.0945986355795885,-0.0584468268118252,-0.0528993088643853,0.011779435945254,0.060474245454452,0.141461372903815,-0.0457724625852685,0.507624408022493,0.00833346484514463,0.193893926592277,-0.0661028630344421,-0.0144569103122971,0.111116178068566,0.122622653040873,0.0602551710828552,0,-0.109907954467554,0,0.0747409822176985,0.0553174890245403,-0.108017333833055,0.0372905817232427,0,0.0231731840198937,0.947883235589587,0.0081470080465118,0,0.0258493951020098,0,0.270350741284981,0.0612458253722296,-0.178774344297513,0.209061813243613,0,0.123326947645817,0,0,-0.171878293643771,-0.169723870630237,0,-0.246204920279246,-0.0711411167687922,-0.21131568038934,-0.0502189063007819,0,0,-0.198840065725059,0,0.0657521671341522,-0.309093703036361,0.0657521671341522,0.0724540697535252,0.0779456992608755,0,-0.0471998165545318,0,0,-0.177527765965176,0,0.034323614593516,0,0,0.0469530641828459,0.0566705646573312,0,0,0,0.00118448984521297,0,0,0,0,0,0,0,-0.0511919412924078,0.11668468867683,0,-0.0349773924196356,0,0.0657521671341522,0,0,0,0.0193846860888326,0,0.0657521671341522,0.138436863565482,0.0950934969090075,-0.12301741567642,0.061422992899724,0,0,0,0.081110958228195,0.0152589285393863,0.0657521671341522,-0.0661105393634795,0,0,0,0,0.0367049960102363,0,0,0,0.0328760835670761,0.00802171008048817,-0.177937733147555,0,0,0,0.0862240498139198,0,0,0,0.0580595806611315,-0.0536115796399972,0,0,-0.185069901118714,0,-0.164832795750454,0.0412641062526062,0,0.064155706394656,-0.0483102399496302,-0.131861017738175,0,0,0.352048136797195,0,0.0157392832714387,0.249786966190808,-0.0823702229656663,0,0.0140628204889237,0,0,0,0,0,0.0657521671341522,-0.091468526600308,0,0,0,0,0,0,0,0,0,0,0.0657521671341522,-0.0551860196912657,0.0810746209889536,0.0885742324648159,0,0,0,0,0,0,0.403484047465535,-0.089841283147679,0,0,0,0,0,0,0,0,0.262049905751159,0,0,0,0,0,-0.0969923612426051,0,0.0657521671341522,0,0,0.0125528023691199,0,0,-0.211609965059362,0,0,0,0,0,0,0,0.0306131693029619,0,0,0,0,0,-0.123319086035448,-0.407310905660538,0,0.0657521671341522,0,0,0,0,0,0.0883451532096198,0,0,0,0,-0.113884373708977,0,0,0,0.113699105844954,0,0.0129806475610779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181589225707855,0.061422992899724,0,0,0.345905626470084,0,0.0096268448087598,0.0657521671341522,0,0,0.090705815544428,0,0,0,0,0,0,0.00153565953854903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0328760835670761,0.0478798178321402,0,0,0,0,0.0657521671341522,0,0,0.198876464513612,0,0,-0.0591567262334501,0,0,0,0,0.0815925714573776,0,0.0873524599285246,0.303335182187244,0.0350168679382239,0,0,0,0.169044563651378,0.173298677647464,0,0,0.0657521671341522,0.230056973362768,0,0,0,0,0,0,0,0,0.122845985799448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143511350433242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00113527970834044,0.0657521671341522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0932802093788256,0,0,0,-0.090240243857596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657521671341522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657521671341522,0,0,0,-0.186933376316285,0,0,0,0,0,0,0,0,0.0657521671341522,0,0.0816798848104001,0,0,0.017530091895098,0,0.0384693535694205,0,0,0,0,0,0,0,0,0,0,0,0.0657521671341522,0,0,0,0,-0.103643770248047,0,0,0,0,-0.047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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC6305 | |rna_catalog_number=SC6305 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.08362281780507e-249!GO:0005737;cytoplasm;7.0077959925302e-199!GO:0043226;organelle;1.92146558956664e-198!GO:0043229;intracellular organelle;4.19894948897846e-198!GO:0043231;intracellular membrane-bound organelle;2.17848163576533e-193!GO:0043227;membrane-bound organelle;4.7381219104713e-193!GO:0044422;organelle part;3.60824659261671e-150!GO:0044446;intracellular organelle part;9.93066185651682e-149!GO:0044444;cytoplasmic part;1.95204554935954e-141!GO:0032991;macromolecular complex;6.48542875334735e-101!GO:0044238;primary metabolic process;5.46972446577296e-93!GO:0044237;cellular metabolic process;1.90620312852537e-91!GO:0030529;ribonucleoprotein complex;1.96674869693151e-89!GO:0043170;macromolecule metabolic process;8.46789127000502e-84!GO:0005515;protein binding;2.16043120128553e-83!GO:0005634;nucleus;1.10329950032794e-74!GO:0043233;organelle lumen;2.30627628820612e-72!GO:0031974;membrane-enclosed lumen;2.30627628820612e-72!GO:0044428;nuclear part;5.49640374506649e-70!GO:0003723;RNA binding;8.65266555148176e-70!GO:0005739;mitochondrion;9.42833893410802e-67!GO:0005840;ribosome;2.40178682823771e-55!GO:0019538;protein metabolic process;7.66445450590426e-54!GO:0031090;organelle membrane;5.5509605545195e-53!GO:0016043;cellular component organization and biogenesis;4.18358517850667e-52!GO:0006412;translation;8.63768564969905e-52!GO:0043234;protein complex;1.64350405827316e-50!GO:0003735;structural constituent of ribosome;2.33818659068832e-49!GO:0044260;cellular macromolecule metabolic process;1.45051843562708e-47!GO:0006396;RNA processing;2.71819823007799e-47!GO:0044267;cellular protein metabolic process;4.52888779014748e-47!GO:0044429;mitochondrial part;9.82776191266431e-46!GO:0009058;biosynthetic process;3.81186149906259e-45!GO:0043283;biopolymer metabolic process;3.55705484169736e-44!GO:0015031;protein transport;1.12255504562147e-43!GO:0033036;macromolecule localization;2.20467588853258e-43!GO:0033279;ribosomal subunit;5.61485012382534e-43!GO:0031967;organelle envelope;6.43059617260009e-43!GO:0031975;envelope;1.6346351816311e-42!GO:0044249;cellular biosynthetic process;2.59558329581071e-41!GO:0031981;nuclear lumen;3.2684024085448e-41!GO:0009059;macromolecule biosynthetic process;4.7057493501539e-41!GO:0005829;cytosol;3.62203182434036e-40!GO:0008104;protein localization;6.65978590428706e-40!GO:0045184;establishment of protein localization;6.6772176420338e-40!GO:0043228;non-membrane-bound organelle;5.84225910102033e-39!GO:0043232;intracellular non-membrane-bound organelle;5.84225910102033e-39!GO:0010467;gene expression;1.8079474340298e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.90924720026284e-38!GO:0016071;mRNA metabolic process;7.97027053831962e-37!GO:0046907;intracellular transport;2.70958970711662e-36!GO:0008380;RNA splicing;2.74342007736597e-35!GO:0006996;organelle organization and biogenesis;6.21874791412554e-35!GO:0065003;macromolecular complex assembly;9.09717280648828e-34!GO:0006397;mRNA processing;1.26580861051589e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.16000980773464e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.54086954285512e-31!GO:0006886;intracellular protein transport;3.62866537524014e-30!GO:0005740;mitochondrial envelope;1.01529767698871e-29!GO:0022607;cellular component assembly;1.674842243041e-29!GO:0006259;DNA metabolic process;5.52278372211682e-29!GO:0007049;cell cycle;3.69951808391802e-28!GO:0031966;mitochondrial membrane;5.66370816524423e-28!GO:0019866;organelle inner membrane;4.83358736990504e-27!GO:0000166;nucleotide binding;2.2434365835567e-25!GO:0005654;nucleoplasm;6.93041343066943e-25!GO:0005743;mitochondrial inner membrane;7.32760790919629e-25!GO:0005681;spliceosome;1.38577831982986e-24!GO:0044445;cytosolic part;1.8630382706788e-24!GO:0006119;oxidative phosphorylation;1.90176200431421e-23!GO:0051649;establishment of cellular localization;1.91635281998582e-23!GO:0051641;cellular localization;2.23362364075781e-23!GO:0012505;endomembrane system;5.42122245215643e-23!GO:0022402;cell cycle process;3.89751958223524e-22!GO:0015935;small ribosomal subunit;4.12258733823702e-22!GO:0015934;large ribosomal subunit;5.86713591301203e-22!GO:0000278;mitotic cell cycle;1.00182534884882e-21!GO:0005783;endoplasmic reticulum;1.53159585192135e-21!GO:0016462;pyrophosphatase activity;2.41241938055337e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.88394423101948e-21!GO:0044455;mitochondrial membrane part;4.35909911734576e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;4.64114978703166e-21!GO:0003676;nucleic acid binding;4.64114978703166e-21!GO:0017111;nucleoside-triphosphatase activity;7.07599571720063e-21!GO:0006457;protein folding;1.40860893528788e-20!GO:0031980;mitochondrial lumen;6.34676001396746e-20!GO:0005759;mitochondrial matrix;6.34676001396746e-20!GO:0044451;nucleoplasm part;9.72256427554101e-20!GO:0022618;protein-RNA complex assembly;1.67524862613655e-18!GO:0005746;mitochondrial respiratory chain;2.08635231578551e-18!GO:0005794;Golgi apparatus;2.2107898271511e-18!GO:0032553;ribonucleotide binding;2.79097090325253e-18!GO:0032555;purine ribonucleotide binding;2.79097090325253e-18!GO:0017076;purine nucleotide binding;5.37331090593492e-18!GO:0048770;pigment granule;7.30989944204468e-18!GO:0042470;melanosome;7.30989944204468e-18!GO:0044432;endoplasmic reticulum part;1.83465764632157e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.49956570744385e-17!GO:0005730;nucleolus;4.84450806516747e-17!GO:0006974;response to DNA damage stimulus;8.09295466466207e-17!GO:0000087;M phase of mitotic cell cycle;1.45662562210889e-16!GO:0005694;chromosome;2.32945018050605e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.35892354777788e-16!GO:0007067;mitosis;2.71015753176599e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.71015753176599e-16!GO:0003954;NADH dehydrogenase activity;2.71015753176599e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.71015753176599e-16!GO:0016874;ligase activity;2.72045654455452e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.79752982827816e-16!GO:0051186;cofactor metabolic process;5.50149331285989e-16!GO:0022403;cell cycle phase;8.87929233758595e-16!GO:0005761;mitochondrial ribosome;8.92242556933404e-16!GO:0000313;organellar ribosome;8.92242556933404e-16!GO:0044265;cellular macromolecule catabolic process;1.03930098530248e-15!GO:0051301;cell division;1.25468663984182e-15!GO:0006605;protein targeting;1.78765168496987e-15!GO:0006512;ubiquitin cycle;1.9515606907979e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.25108342888089e-15!GO:0043285;biopolymer catabolic process;3.12444587286936e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.82898593861279e-15!GO:0019941;modification-dependent protein catabolic process;4.0398659408346e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.0398659408346e-15!GO:0016070;RNA metabolic process;4.10448206683235e-15!GO:0005524;ATP binding;4.16420973282792e-15!GO:0008134;transcription factor binding;4.74653072330618e-15!GO:0008135;translation factor activity, nucleic acid binding;4.80110577175394e-15!GO:0006511;ubiquitin-dependent protein catabolic process;5.6181355553944e-15!GO:0044257;cellular protein catabolic process;6.0314600686876e-15!GO:0044427;chromosomal part;6.10927998522203e-15!GO:0032559;adenyl ribonucleotide binding;6.9761189061713e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.56194629941364e-14!GO:0042773;ATP synthesis coupled electron transport;1.56194629941364e-14!GO:0030554;adenyl nucleotide binding;1.87247818956297e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.12817918189037e-14!GO:0045271;respiratory chain complex I;2.12817918189037e-14!GO:0005747;mitochondrial respiratory chain complex I;2.12817918189037e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.60519686530626e-14!GO:0048193;Golgi vesicle transport;2.92637088928321e-14!GO:0009057;macromolecule catabolic process;3.53688538513716e-14!GO:0006281;DNA repair;5.45053471638211e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.38295143681331e-14!GO:0005635;nuclear envelope;9.53036785435087e-14!GO:0030163;protein catabolic process;9.62453364419513e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;9.8230751880085e-14!GO:0000375;RNA splicing, via transesterification reactions;9.8230751880085e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.8230751880085e-14!GO:0016192;vesicle-mediated transport;1.13320199932152e-13!GO:0043412;biopolymer modification;1.48014018520112e-13!GO:0042254;ribosome biogenesis and assembly;1.7649433503946e-13!GO:0044248;cellular catabolic process;1.81479793472928e-13!GO:0051082;unfolded protein binding;2.21922333207842e-13!GO:0000279;M phase;8.1754283547855e-13!GO:0031965;nuclear membrane;1.15516205382766e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.27675641817145e-12!GO:0051276;chromosome organization and biogenesis;1.6500211192849e-12!GO:0051726;regulation of cell cycle;1.6500211192849e-12!GO:0003743;translation initiation factor activity;1.76718487230595e-12!GO:0000074;regulation of progression through cell cycle;1.90818893720739e-12!GO:0006260;DNA replication;2.65327208997241e-12!GO:0044453;nuclear membrane part;3.27462352010752e-12!GO:0006732;coenzyme metabolic process;3.37294114206295e-12!GO:0009719;response to endogenous stimulus;3.69971788849298e-12!GO:0005789;endoplasmic reticulum membrane;4.03694096943408e-12!GO:0006464;protein modification process;4.04430248173824e-12!GO:0005793;ER-Golgi intermediate compartment;6.87279074134078e-12!GO:0006413;translational initiation;8.10314158300541e-12!GO:0009055;electron carrier activity;1.58254196310611e-11!GO:0016604;nuclear body;3.68383272945971e-11!GO:0006913;nucleocytoplasmic transport;5.30953380724268e-11!GO:0016887;ATPase activity;5.61859844889967e-11!GO:0009259;ribonucleotide metabolic process;6.66305656323986e-11!GO:0042623;ATPase activity, coupled;1.20185493354711e-10!GO:0051169;nuclear transport;1.29679303156767e-10!GO:0006163;purine nucleotide metabolic process;1.48534374841226e-10!GO:0008565;protein transporter activity;3.33827882762046e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.7767049497745e-10!GO:0009150;purine ribonucleotide metabolic process;3.90002180693247e-10!GO:0043687;post-translational protein modification;4.50087981178398e-10!GO:0006461;protein complex assembly;4.50087981178398e-10!GO:0006446;regulation of translational initiation;5.61276109526836e-10!GO:0012501;programmed cell death;5.79653254122038e-10!GO:0004386;helicase activity;6.08117454351497e-10!GO:0003712;transcription cofactor activity;7.66305783073988e-10!GO:0006399;tRNA metabolic process;8.18961067912271e-10!GO:0006164;purine nucleotide biosynthetic process;1.05371864582315e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.1712728666676e-09!GO:0006323;DNA packaging;1.1771451042787e-09!GO:0006915;apoptosis;1.17783667646572e-09!GO:0015630;microtubule cytoskeleton;1.22469407838031e-09!GO:0005643;nuclear pore;1.43347506805702e-09!GO:0009260;ribonucleotide biosynthetic process;1.47050305882773e-09!GO:0048523;negative regulation of cellular process;1.50337809429704e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.69183433044105e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.43225551026936e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.6127726487562e-09!GO:0009141;nucleoside triphosphate metabolic process;3.55042128812388e-09!GO:0000785;chromatin;3.64987101080575e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.96705046061214e-09!GO:0008639;small protein conjugating enzyme activity;4.64933438240352e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.67037349620045e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.67037349620045e-09!GO:0065004;protein-DNA complex assembly;4.97071848809326e-09!GO:0046930;pore complex;5.37088699890012e-09!GO:0008219;cell death;5.83006977001639e-09!GO:0016265;death;5.83006977001639e-09!GO:0065002;intracellular protein transport across a membrane;6.42640449285826e-09!GO:0009060;aerobic respiration;7.85646577271524e-09!GO:0050794;regulation of cellular process;8.41743397106431e-09!GO:0004842;ubiquitin-protein ligase activity;8.93376843539479e-09!GO:0006364;rRNA processing;9.42590930898774e-09!GO:0008026;ATP-dependent helicase activity;9.55005041812949e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.23482648883348e-08!GO:0006333;chromatin assembly or disassembly;1.24934403517213e-08!GO:0016607;nuclear speck;1.43013143967411e-08!GO:0006366;transcription from RNA polymerase II promoter;1.47296164475945e-08!GO:0019787;small conjugating protein ligase activity;1.94066122454476e-08!GO:0006403;RNA localization;2.10374438380217e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.10374438380217e-08!GO:0017038;protein import;2.15001522563977e-08!GO:0050657;nucleic acid transport;2.32643426269402e-08!GO:0051236;establishment of RNA localization;2.32643426269402e-08!GO:0050658;RNA transport;2.32643426269402e-08!GO:0015986;ATP synthesis coupled proton transport;2.32643426269402e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.32643426269402e-08!GO:0009056;catabolic process;2.71197885759696e-08!GO:0016072;rRNA metabolic process;2.71197885759696e-08!GO:0051188;cofactor biosynthetic process;2.71704473326922e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.76081566813055e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.76081566813055e-08!GO:0045333;cellular respiration;2.91327277747676e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.97361497224359e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.46110168893577e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.46110168893577e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.46110168893577e-08!GO:0009117;nucleotide metabolic process;3.46220085644302e-08!GO:0046034;ATP metabolic process;3.68046645440228e-08!GO:0051246;regulation of protein metabolic process;5.16394350176032e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.29430128851343e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.29430128851343e-08!GO:0003924;GTPase activity;5.96887507997495e-08!GO:0043038;amino acid activation;6.94163717754971e-08!GO:0006418;tRNA aminoacylation for protein translation;6.94163717754971e-08!GO:0043039;tRNA aminoacylation;6.94163717754971e-08!GO:0048519;negative regulation of biological process;7.56083597432085e-08!GO:0005788;endoplasmic reticulum lumen;7.72133010065458e-08!GO:0044431;Golgi apparatus part;8.92950215709068e-08!GO:0016881;acid-amino acid ligase activity;1.41761725379451e-07!GO:0006334;nucleosome assembly;1.9201787200016e-07!GO:0006099;tricarboxylic acid cycle;1.93062308979201e-07!GO:0046356;acetyl-CoA catabolic process;1.93062308979201e-07!GO:0016740;transferase activity;3.09807673234062e-07!GO:0005819;spindle;3.19781812241291e-07!GO:0003697;single-stranded DNA binding;3.51945783169614e-07!GO:0019829;cation-transporting ATPase activity;3.76919329137223e-07!GO:0006754;ATP biosynthetic process;4.10612779707787e-07!GO:0006753;nucleoside phosphate metabolic process;4.10612779707787e-07!GO:0016491;oxidoreductase activity;4.26070895124494e-07!GO:0006793;phosphorus metabolic process;4.46902895954683e-07!GO:0006796;phosphate metabolic process;4.46902895954683e-07!GO:0005813;centrosome;5.45837973584626e-07!GO:0051187;cofactor catabolic process;5.92013237248211e-07!GO:0006084;acetyl-CoA metabolic process;5.95521290668609e-07!GO:0030120;vesicle coat;5.97896715549519e-07!GO:0030662;coated vesicle membrane;5.97896715549519e-07!GO:0005768;endosome;6.18197549512138e-07!GO:0048475;coated membrane;7.33777734921852e-07!GO:0030117;membrane coat;7.33777734921852e-07!GO:0051028;mRNA transport;7.33777734921852e-07!GO:0009109;coenzyme catabolic process;7.81462709784605e-07!GO:0043566;structure-specific DNA binding;8.05452059065945e-07!GO:0031497;chromatin assembly;1.01563388434759e-06!GO:0016310;phosphorylation;1.15878430075491e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.36619456126099e-06!GO:0016779;nucleotidyltransferase activity;1.47667238563092e-06!GO:0045259;proton-transporting ATP synthase complex;1.48497017865497e-06!GO:0005815;microtubule organizing center;1.50272625725251e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.53780248508543e-06!GO:0016853;isomerase activity;1.68539820279e-06!GO:0000245;spliceosome assembly;1.76803205394693e-06!GO:0009108;coenzyme biosynthetic process;1.9169257654394e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.05328491133228e-06!GO:0008654;phospholipid biosynthetic process;2.0774233294214e-06!GO:0045786;negative regulation of progression through cell cycle;2.28616485753309e-06!GO:0000775;chromosome, pericentric region;2.29126404687368e-06!GO:0005762;mitochondrial large ribosomal subunit;2.83472296105136e-06!GO:0000315;organellar large ribosomal subunit;2.83472296105136e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.00079091253357e-06!GO:0051170;nuclear import;3.08958356017444e-06!GO:0051329;interphase of mitotic cell cycle;3.55326080503757e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.66967341699305e-06!GO:0005525;GTP binding;3.8756781065534e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.02358357658381e-06!GO:0007010;cytoskeleton organization and biogenesis;4.23323477210463e-06!GO:0050789;regulation of biological process;4.30206930939788e-06!GO:0007005;mitochondrion organization and biogenesis;4.93870759756324e-06!GO:0006752;group transfer coenzyme metabolic process;5.02677547811697e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.2479488984221e-06!GO:0016787;hydrolase activity;5.91050919922041e-06!GO:0005667;transcription factor complex;5.96870594873703e-06!GO:0016859;cis-trans isomerase activity;6.21115924241078e-06!GO:0007051;spindle organization and biogenesis;6.50768482022722e-06!GO:0031252;leading edge;6.64788891769137e-06!GO:0006606;protein import into nucleus;7.02650871385752e-06!GO:0051325;interphase;7.28122877519583e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.53995527281248e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.29574581168159e-06!GO:0000139;Golgi membrane;8.53284180115548e-06!GO:0032446;protein modification by small protein conjugation;8.99086446368655e-06!GO:0006613;cotranslational protein targeting to membrane;9.67895248557329e-06!GO:0016023;cytoplasmic membrane-bound vesicle;9.83060202405946e-06!GO:0031988;membrane-bound vesicle;9.98364959810242e-06!GO:0005770;late endosome;1.07829577981734e-05!GO:0016567;protein ubiquitination;1.10580512673106e-05!GO:0003724;RNA helicase activity;1.1270197642992e-05!GO:0000151;ubiquitin ligase complex;1.1757075243374e-05!GO:0043067;regulation of programmed cell death;1.32090129052385e-05!GO:0042981;regulation of apoptosis;1.32540414794075e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.38970985621849e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.42127976432247e-05!GO:0016564;transcription repressor activity;1.47295027861887e-05!GO:0043623;cellular protein complex assembly;1.50751951566954e-05!GO:0004298;threonine endopeptidase activity;1.63554987030994e-05!GO:0043069;negative regulation of programmed cell death;1.68150371651942e-05!GO:0044440;endosomal part;1.90598015724422e-05!GO:0010008;endosome membrane;1.90598015724422e-05!GO:0031324;negative regulation of cellular metabolic process;1.94202855572695e-05!GO:0006261;DNA-dependent DNA replication;2.23418975956116e-05!GO:0006916;anti-apoptosis;2.29904374952744e-05!GO:0003714;transcription corepressor activity;2.56176233348896e-05!GO:0032561;guanyl ribonucleotide binding;2.76840720651062e-05!GO:0019001;guanyl nucleotide binding;2.76840720651062e-05!GO:0043066;negative regulation of apoptosis;3.01212183298244e-05!GO:0030867;rough endoplasmic reticulum membrane;3.07358217924667e-05!GO:0005798;Golgi-associated vesicle;3.22392315905454e-05!GO:0006091;generation of precursor metabolites and energy;3.24942215477937e-05!GO:0009165;nucleotide biosynthetic process;3.44406772486893e-05!GO:0019843;rRNA binding;3.51958977094763e-05!GO:0016568;chromatin modification;3.66491685565144e-05!GO:0031982;vesicle;3.67026013063952e-05!GO:0031410;cytoplasmic vesicle;4.22883387384052e-05!GO:0045454;cell redox homeostasis;4.68312284495538e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.83849721373188e-05!GO:0000314;organellar small ribosomal subunit;4.84431359052623e-05!GO:0005763;mitochondrial small ribosomal subunit;4.84431359052623e-05!GO:0031968;organelle outer membrane;5.22788299944844e-05!GO:0019899;enzyme binding;5.76131222729833e-05!GO:0003899;DNA-directed RNA polymerase activity;6.42398003714108e-05!GO:0003713;transcription coactivator activity;6.53410719018347e-05!GO:0019867;outer membrane;6.94192036703029e-05!GO:0008094;DNA-dependent ATPase activity;7.00134535595503e-05!GO:0000075;cell cycle checkpoint;7.03718131131255e-05!GO:0005769;early endosome;8.03179774854703e-05!GO:0009892;negative regulation of metabolic process;8.09705926149259e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.39212118088065e-05!GO:0005773;vacuole;8.83000720500996e-05!GO:0016563;transcription activator activity;9.65010083086762e-05!GO:0043021;ribonucleoprotein binding;9.83470381197774e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000111658108890896!GO:0030029;actin filament-based process;0.000121259180229235!GO:0016126;sterol biosynthetic process;0.00012809672554413!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00013174228178714!GO:0006612;protein targeting to membrane;0.000204859207835648!GO:0005741;mitochondrial outer membrane;0.000205919773159439!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000210472154234917!GO:0046474;glycerophospholipid biosynthetic process;0.000229717049153071!GO:0033116;ER-Golgi intermediate compartment membrane;0.000234481253700423!GO:0016044;membrane organization and biogenesis;0.000269314885474017!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000286573900667264!GO:0004576;oligosaccharyl transferase activity;0.000304012764498432!GO:0051427;hormone receptor binding;0.000310152879416093!GO:0005048;signal sequence binding;0.000315965111580286!GO:0000786;nucleosome;0.00032147673093071!GO:0008361;regulation of cell size;0.000332806409287393!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000336946159310493!GO:0008092;cytoskeletal protein binding;0.000343894992721809!GO:0016049;cell growth;0.000354374421400626!GO:0005885;Arp2/3 protein complex;0.000355208141071313!GO:0008186;RNA-dependent ATPase activity;0.000356352809469543!GO:0008250;oligosaccharyl transferase complex;0.000367585587553586!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000408080149830769!GO:0005905;coated pit;0.000449979687577978!GO:0005657;replication fork;0.000458368569099818!GO:0000323;lytic vacuole;0.000458902176950108!GO:0005764;lysosome;0.000458902176950108!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00048561346497266!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000491220291807707!GO:0043681;protein import into mitochondrion;0.000500433991573939!GO:0048522;positive regulation of cellular process;0.000520421351382708!GO:0051168;nuclear export;0.000523315054548817!GO:0000776;kinetochore;0.000603918225310917!GO:0035257;nuclear hormone receptor binding;0.000637787824171651!GO:0008610;lipid biosynthetic process;0.000642328360334779!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000642328360334779!GO:0051252;regulation of RNA metabolic process;0.000657662858783758!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000670387398385873!GO:0007243;protein kinase cascade;0.000706728269443796!GO:0051789;response to protein stimulus;0.000709835420859456!GO:0006986;response to unfolded protein;0.000709835420859456!GO:0005791;rough endoplasmic reticulum;0.000730948875281299!GO:0016363;nuclear matrix;0.00073296297303745!GO:0001558;regulation of cell growth;0.000793059617428339!GO:0006950;response to stress;0.000830316555434707!GO:0051920;peroxiredoxin activity;0.000854523911550544!GO:0018196;peptidyl-asparagine modification;0.000856487665463786!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000856487665463786!GO:0006626;protein targeting to mitochondrion;0.000881936074697448!GO:0006414;translational elongation;0.000905663657238233!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000920170153223329!GO:0000059;protein import into nucleus, docking;0.000926175342552822!GO:0007264;small GTPase mediated signal transduction;0.000968863863168212!GO:0004004;ATP-dependent RNA helicase activity;0.000984219430101042!GO:0005874;microtubule;0.000986449786770157!GO:0046489;phosphoinositide biosynthetic process;0.000990651783398772!GO:0046467;membrane lipid biosynthetic process;0.000992555176422064!GO:0016481;negative regulation of transcription;0.00107410869870865!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00111232022065347!GO:0006302;double-strand break repair;0.00112936144999464!GO:0019222;regulation of metabolic process;0.00113892483499135!GO:0030663;COPI coated vesicle membrane;0.0011498718106019!GO:0030126;COPI vesicle coat;0.0011498718106019!GO:0006695;cholesterol biosynthetic process;0.00115640187908404!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00124174438770293!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00124174438770293!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00124174438770293!GO:0030133;transport vesicle;0.00126843737800357!GO:0044262;cellular carbohydrate metabolic process;0.00135883009062509!GO:0044452;nucleolar part;0.00147513977051404!GO:0003690;double-stranded DNA binding;0.00148495247009373!GO:0003729;mRNA binding;0.00155623691313871!GO:0065009;regulation of a molecular function;0.00167089000859335!GO:0007050;cell cycle arrest;0.00168278141374975!GO:0007088;regulation of mitosis;0.00171027859255776!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00175415384236058!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00175415384236058!GO:0007006;mitochondrial membrane organization and biogenesis;0.00179213108943155!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0018468887743405!GO:0003682;chromatin binding;0.00185409040710083!GO:0005684;U2-dependent spliceosome;0.00186468690318779!GO:0007093;mitotic cell cycle checkpoint;0.00190419662049787!GO:0048471;perinuclear region of cytoplasm;0.00195417396882458!GO:0015631;tubulin binding;0.00196457712739658!GO:0031072;heat shock protein binding;0.00197373186640817!GO:0008047;enzyme activator activity;0.00201738980051765!GO:0008033;tRNA processing;0.00206075031476046!GO:0007052;mitotic spindle organization and biogenesis;0.00207569244997927!GO:0000082;G1/S transition of mitotic cell cycle;0.00209093474741953!GO:0065007;biological regulation;0.00215260288436463!GO:0051087;chaperone binding;0.0021787656997555!GO:0003684;damaged DNA binding;0.00217998808960105!GO:0030137;COPI-coated vesicle;0.00229269508223234!GO:0048500;signal recognition particle;0.00244987591782502!GO:0006891;intra-Golgi vesicle-mediated transport;0.00245359928029015!GO:0016197;endosome transport;0.00245359928029015!GO:0008139;nuclear localization sequence binding;0.00247450717830305!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0025291947494718!GO:0006383;transcription from RNA polymerase III promoter;0.00261519886450486!GO:0030027;lamellipodium;0.00273006436204333!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00286435761723481!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00286435761723481!GO:0007059;chromosome segregation;0.00307230659320671!GO:0003678;DNA helicase activity;0.00311104350182008!GO:0006402;mRNA catabolic process;0.00327617872778242!GO:0005637;nuclear inner membrane;0.00337394490593675!GO:0030176;integral to endoplasmic reticulum membrane;0.00345996749860898!GO:0033673;negative regulation of kinase activity;0.00356208404515709!GO:0006469;negative regulation of protein kinase activity;0.00356208404515709!GO:0042802;identical protein binding;0.00361706629296874!GO:0051052;regulation of DNA metabolic process;0.00369167041441361!GO:0048487;beta-tubulin binding;0.00384273796413826!GO:0030880;RNA polymerase complex;0.00394732339505952!GO:0006310;DNA recombination;0.00412352330803024!GO:0030134;ER to Golgi transport vesicle;0.0043692536224838!GO:0051348;negative regulation of transferase activity;0.00453334267809207!GO:0006650;glycerophospholipid metabolic process;0.00463275163806067!GO:0008312;7S RNA binding;0.00475624236298354!GO:0017166;vinculin binding;0.00489646149852801!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00504578496440955!GO:0015002;heme-copper terminal oxidase activity;0.00504578496440955!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00504578496440955!GO:0004129;cytochrome-c oxidase activity;0.00504578496440955!GO:0008180;signalosome;0.00507698612470664!GO:0035258;steroid hormone receptor binding;0.00514450083760959!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00523815929181379!GO:0043284;biopolymer biosynthetic process;0.00535927682482895!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00540187897566156!GO:0045047;protein targeting to ER;0.00540187897566156!GO:0030384;phosphoinositide metabolic process;0.00540187897566156!GO:0051128;regulation of cellular component organization and biogenesis;0.00565233511795146!GO:0006839;mitochondrial transport;0.00566019652968137!GO:0004674;protein serine/threonine kinase activity;0.00585530903184812!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00589065467097917!GO:0030132;clathrin coat of coated pit;0.00598280472657147!GO:0043488;regulation of mRNA stability;0.00606567174889931!GO:0043487;regulation of RNA stability;0.00606567174889931!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00607635479214803!GO:0030521;androgen receptor signaling pathway;0.00619012594587008!GO:0030127;COPII vesicle coat;0.00621480789655556!GO:0012507;ER to Golgi transport vesicle membrane;0.00621480789655556!GO:0000910;cytokinesis;0.00662300439536499!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00668814881492282!GO:0015399;primary active transmembrane transporter activity;0.00668814881492282!GO:0030118;clathrin coat;0.00673496783522333!GO:0003711;transcription elongation regulator activity;0.00680029867822002!GO:0004177;aminopeptidase activity;0.00680029867822002!GO:0031901;early endosome membrane;0.00682694694340644!GO:0006595;polyamine metabolic process;0.00705751535500081!GO:0030658;transport vesicle membrane;0.00706022889459622!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00741411989823065!GO:0007017;microtubule-based process;0.00760006840564177!GO:0030041;actin filament polymerization;0.00802667902525688!GO:0046483;heterocycle metabolic process;0.00803503686711623!GO:0016272;prefoldin complex;0.00810144200598288!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00818820728102248!GO:0000428;DNA-directed RNA polymerase complex;0.00818820728102248!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00872630567499722!GO:0005096;GTPase activator activity;0.00874838278825538!GO:0050662;coenzyme binding;0.00895388667222361!GO:0005876;spindle microtubule;0.00927072403395834!GO:0005869;dynactin complex;0.00933955281264436!GO:0045045;secretory pathway;0.00947201696990423!GO:0006740;NADPH regeneration;0.0100046440877491!GO:0006098;pentose-phosphate shunt;0.0100046440877491!GO:0000049;tRNA binding;0.0105141493185145!GO:0006401;RNA catabolic process;0.0106384469974363!GO:0032508;DNA duplex unwinding;0.0108328537892448!GO:0032392;DNA geometric change;0.0108328537892448!GO:0006509;membrane protein ectodomain proteolysis;0.0110824007264783!GO:0033619;membrane protein proteolysis;0.0110824007264783!GO:0005832;chaperonin-containing T-complex;0.0111798033969858!GO:0007346;regulation of progression through mitotic cell cycle;0.0112122209521243!GO:0030119;AP-type membrane coat adaptor complex;0.0115510753049702!GO:0000339;RNA cap binding;0.0116428194041405!GO:0051539;4 iron, 4 sulfur cluster binding;0.0116873535899011!GO:0051270;regulation of cell motility;0.0117908742244173!GO:0015992;proton transport;0.0119011329699499!GO:0043022;ribosome binding;0.0119942118423102!GO:0031902;late endosome membrane;0.0122184180255622!GO:0051287;NAD binding;0.0124230130294576!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0125270777795927!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0125471438345568!GO:0006275;regulation of DNA replication;0.0125471438345568!GO:0006506;GPI anchor biosynthetic process;0.0125928629375773!GO:0006818;hydrogen transport;0.0126539486679029!GO:0051101;regulation of DNA binding;0.0128945258825964!GO:0006778;porphyrin metabolic process;0.01306233552537!GO:0033013;tetrapyrrole metabolic process;0.01306233552537!GO:0008154;actin polymerization and/or depolymerization;0.0132919926582416!GO:0006352;transcription initiation;0.0134326647595096!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.013791786514999!GO:0031124;mRNA 3'-end processing;0.0140988428130973!GO:0030659;cytoplasmic vesicle membrane;0.0141551994744485!GO:0005862;muscle thin filament tropomyosin;0.014301210906789!GO:0006505;GPI anchor metabolic process;0.014301210906789!GO:0001726;ruffle;0.0144970569372499!GO:0006220;pyrimidine nucleotide metabolic process;0.0145317819907682!GO:0006979;response to oxidative stress;0.0146156205688013!GO:0009112;nucleobase metabolic process;0.0146789304014458!GO:0006405;RNA export from nucleus;0.0150139824857488!GO:0006268;DNA unwinding during replication;0.0150351488974903!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0150351488974903!GO:0006497;protein amino acid lipidation;0.0150469144003451!GO:0030660;Golgi-associated vesicle membrane;0.015075514724125!GO:0030518;steroid hormone receptor signaling pathway;0.0150869935224133!GO:0008632;apoptotic program;0.0155635557451502!GO:0042158;lipoprotein biosynthetic process;0.0158614105107772!GO:0031625;ubiquitin protein ligase binding;0.0160216410112751!GO:0030032;lamellipodium biogenesis;0.0160310409236192!GO:0007034;vacuolar transport;0.0160363815466531!GO:0048518;positive regulation of biological process;0.0165918993845639!GO:0016741;transferase activity, transferring one-carbon groups;0.0166525978105896!GO:0008168;methyltransferase activity;0.0168334600809057!GO:0006611;protein export from nucleus;0.0168656937745757!GO:0000922;spindle pole;0.0169479144965856!GO:0045941;positive regulation of transcription;0.0169479144965856!GO:0022415;viral reproductive process;0.0170636905667683!GO:0006897;endocytosis;0.0171001988954147!GO:0010324;membrane invagination;0.0171001988954147!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0171001988954147!GO:0007040;lysosome organization and biogenesis;0.0174088935216843!GO:0007021;tubulin folding;0.0175851982942859!GO:0016408;C-acyltransferase activity;0.017691434527375!GO:0004527;exonuclease activity;0.0180390974285857!GO:0040008;regulation of growth;0.0181739408387288!GO:0050681;androgen receptor binding;0.0181739408387288!GO:0005774;vacuolar membrane;0.0186764791647558!GO:0006284;base-excision repair;0.018827897756255!GO:0045893;positive regulation of transcription, DNA-dependent;0.018827897756255!GO:0006892;post-Golgi vesicle-mediated transport;0.018827897756255!GO:0005100;Rho GTPase activator activity;0.018827897756255!GO:0009116;nucleoside metabolic process;0.0188380839572375!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0189752660225132!GO:0004518;nuclease activity;0.0190327706530213!GO:0030833;regulation of actin filament polymerization;0.0192820173209851!GO:0030131;clathrin adaptor complex;0.0192849674116345!GO:0006643;membrane lipid metabolic process;0.019785838262084!GO:0006289;nucleotide-excision repair;0.0198735691575739!GO:0006144;purine base metabolic process;0.0200138202545002!GO:0040011;locomotion;0.0205653733239587!GO:0015036;disulfide oxidoreductase activity;0.0205653733239587!GO:0007033;vacuole organization and biogenesis;0.0206290080022579!GO:0032984;macromolecular complex disassembly;0.0209326432013613!GO:0004003;ATP-dependent DNA helicase activity;0.0209326432013613!GO:0050790;regulation of catalytic activity;0.0212082034823072!GO:0043086;negative regulation of catalytic activity;0.0212396141909579!GO:0019206;nucleoside kinase activity;0.0218825748748464!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.022832915373473!GO:0051540;metal cluster binding;0.0231310948477491!GO:0051536;iron-sulfur cluster binding;0.0231310948477491!GO:0031272;regulation of pseudopodium formation;0.0232473526368877!GO:0031269;pseudopodium formation;0.0232473526368877!GO:0031344;regulation of cell projection organization and biogenesis;0.0232473526368877!GO:0031268;pseudopodium organization and biogenesis;0.0232473526368877!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0232473526368877!GO:0031274;positive regulation of pseudopodium formation;0.0232473526368877!GO:0022890;inorganic cation transmembrane transporter activity;0.0235941856663944!GO:0008147;structural constituent of bone;0.0237896338040688!GO:0000792;heterochromatin;0.0240538544272517!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0242710391070162!GO:0033043;regulation of organelle organization and biogenesis;0.0242710391070162!GO:0046519;sphingoid metabolic process;0.0242710391070162!GO:0006779;porphyrin biosynthetic process;0.0242710391070162!GO:0033014;tetrapyrrole biosynthetic process;0.0242710391070162!GO:0051098;regulation of binding;0.0249113740321151!GO:0003756;protein disulfide isomerase activity;0.0249974109092284!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0249974109092284!GO:0045892;negative regulation of transcription, DNA-dependent;0.0255461691941741!GO:0016301;kinase activity;0.0257545540011064!GO:0016584;nucleosome positioning;0.0257545540011064!GO:0030496;midbody;0.0257545540011064!GO:0007265;Ras protein signal transduction;0.0263275852662221!GO:0003746;translation elongation factor activity;0.0268372512962108!GO:0045792;negative regulation of cell size;0.0268980629907279!GO:0016125;sterol metabolic process;0.027324463437915!GO:0044433;cytoplasmic vesicle part;0.0273801423259099!GO:0030308;negative regulation of cell growth;0.0279843557605081!GO:0000096;sulfur amino acid metabolic process;0.0280526526738495!GO:0006118;electron transport;0.0284283429285902!GO:0042168;heme metabolic process;0.0284645104266088!GO:0006376;mRNA splice site selection;0.0287615655759516!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0287615655759516!GO:0051271;negative regulation of cell motility;0.0290357229867734!GO:0040012;regulation of locomotion;0.0292240896721658!GO:0000209;protein polyubiquitination;0.0294352145235333!GO:0006672;ceramide metabolic process;0.0295840559236111!GO:0022408;negative regulation of cell-cell adhesion;0.0297402429669134!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0299543907845835!GO:0043241;protein complex disassembly;0.0301109250946438!GO:0006417;regulation of translation;0.0312536077508848!GO:0030031;cell projection biogenesis;0.0313413554964332!GO:0043492;ATPase activity, coupled to movement of substances;0.0320387232066645!GO:0047485;protein N-terminus binding;0.0321250244849125!GO:0005586;collagen type III;0.0323227742082398!GO:0005784;translocon complex;0.0325679833063328!GO:0006739;NADP metabolic process;0.0329736592532409!GO:0033559;unsaturated fatty acid metabolic process;0.0330168854392056!GO:0006636;unsaturated fatty acid biosynthetic process;0.0330168854392056!GO:0008022;protein C-terminus binding;0.0330168854392056!GO:0008017;microtubule binding;0.0333403093083202!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0333703183256255!GO:0030508;thiol-disulfide exchange intermediate activity;0.033432248910454!GO:0031529;ruffle organization and biogenesis;0.0340933222129277!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0340933222129277!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0358392819426073!GO:0031418;L-ascorbic acid binding;0.0359476403385072!GO:0012506;vesicle membrane;0.0359619094177105!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0362256727716863!GO:0016407;acetyltransferase activity;0.036876856630617!GO:0005801;cis-Golgi network;0.0369604911115571!GO:0030433;ER-associated protein catabolic process;0.037015455326027!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.037015455326027!GO:0005092;GDP-dissociation inhibitor activity;0.0371960577482347!GO:0005758;mitochondrial intermembrane space;0.037294361659293!GO:0000287;magnesium ion binding;0.0374554114854082!GO:0043407;negative regulation of MAP kinase activity;0.0376560852953342!GO:0043624;cellular protein complex disassembly;0.0379638112142904!GO:0006607;NLS-bearing substrate import into nucleus;0.0383858553215979!GO:0035035;histone acetyltransferase binding;0.0389153468581727!GO:0009967;positive regulation of signal transduction;0.0394383620374479!GO:0008299;isoprenoid biosynthetic process;0.0394743385125223!GO:0030911;TPR domain binding;0.0395883106115289!GO:0016251;general RNA polymerase II transcription factor activity;0.0396856395261538!GO:0044437;vacuolar part;0.0397111475297428!GO:0016860;intramolecular oxidoreductase activity;0.0397895486112172!GO:0004448;isocitrate dehydrogenase activity;0.0397895486112172!GO:0031371;ubiquitin conjugating enzyme complex;0.0401452399241409!GO:0006378;mRNA polyadenylation;0.0406939257756505!GO:0005606;laminin-1 complex;0.0415313472332314!GO:0008064;regulation of actin polymerization and/or depolymerization;0.041859955015755!GO:0031301;integral to organelle membrane;0.0422493078083728!GO:0030145;manganese ion binding;0.0422493078083728!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0423061758028532!GO:0006644;phospholipid metabolic process;0.0428375527963657!GO:0031123;RNA 3'-end processing;0.0431559641653845!GO:0009225;nucleotide-sugar metabolic process;0.0433993365698017!GO:0001952;regulation of cell-matrix adhesion;0.0445041793563211!GO:0050178;phenylpyruvate tautomerase activity;0.0451017189327267!GO:0008538;proteasome activator activity;0.0451533679655574!GO:0005765;lysosomal membrane;0.0451533679655574!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0451533679655574!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0451533679655574!GO:0010257;NADH dehydrogenase complex assembly;0.0451533679655574!GO:0033108;mitochondrial respiratory chain complex assembly;0.0451533679655574!GO:0048468;cell development;0.0452122844066391!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0452122844066391!GO:0001953;negative regulation of cell-matrix adhesion;0.0452838859495809!GO:0006007;glucose catabolic process;0.0452905169862439!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0455898174019958!GO:0003779;actin binding;0.0461948053982249!GO:0050811;GABA receptor binding;0.0463609665928374!GO:0031970;organelle envelope lumen;0.0467898064693693!GO:0007242;intracellular signaling cascade;0.0477918678831118!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0481103462971196!GO:0006733;oxidoreduction coenzyme metabolic process;0.0481421353786638!GO:0006720;isoprenoid metabolic process;0.0485427028385446!GO:0007041;lysosomal transport;0.049916894569538 | |||
|sample_id=11460 | |sample_id=11460 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=heart | |sample_tissue=heart | ||
|top_motifs=NKX2-2,8:1.10417249385;RXR{A,B,G}:1.06290978741;TLX1..3_NFIC{dimer}:1.03389285098;EVI1:1.03268474818;IKZF1:0.900095378962;FOX{I1,J2}:0.855693901681;GFI1:0.805377583584;AR:0.801499637301;UFEwm:0.792867560999;NKX3-1:0.791204528897;NR3C1:0.778670608916;TFAP4:0.765231381873;RXRA_VDR{dimer}:0.763397724305;POU3F1..4:0.716132809822;TFDP1:0.703140570838;POU1F1:0.692782918687;HOX{A5,B5}:0.677714686101;E2F1..5:0.674243070852;XCPE1{core}:0.661302793161;TOPORS:0.644142614052;ALX1:0.643540762777;CDC5L:0.621578713422;SMAD1..7,9:0.597268213646;SOX{8,9,10}:0.581499677339;MYB:0.577598690247;TEF:0.570008969874;TEAD1:0.546222160931;HSF1,2:0.531994678277;PAX5:0.525112529482;AIRE:0.507889593524;PBX1:0.503373845834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.502097904583;XBP1:0.495304487014;ZNF238:0.479520313539;EN1,2:0.477584744905;GFI1B:0.466158323013;ALX4:0.458713121245;NFY{A,B,C}:0.447279239631;NFATC1..3:0.438325667997;STAT1,3:0.426861889511;SOX17:0.422920534327;LHX3,4:0.387414320336;ZNF143:0.386232264195;GTF2A1,2:0.384604971263;MYBL2:0.373629488038;TAL1_TCF{3,4,12}:0.371218162105;ARID5B:0.366266913093;HES1:0.355120477812;STAT5{A,B}:0.350098700474;MAZ:0.332122356015;NFIX:0.328388683959;EBF1:0.324839120075;GTF2I:0.320379605479;PAX8:0.316831506437;ZBTB16:0.304061464642;GATA4:0.297625295238;ONECUT1,2:0.297427790941;MZF1:0.289556926201;ELK1,4_GABP{A,B1}:0.284691225488;NANOG{mouse}:0.284224214565;EGR1..3:0.276637015201;ELF1,2,4:0.273891146255;TP53:0.271388839475;MTE{core}:0.263015297121;PITX1..3:0.253858403742;PAX4:0.244988361555;ZIC1..3:0.238696300359;RBPJ:0.238520090394;LEF1_TCF7_TCF7L1,2:0.229008634427;SOX2:0.227240599913;FOXP1:0.224835033948;HIC1:0.222125783322;HAND1,2:0.217198471316;PRDM1:0.214490681621;NFE2L2:0.205052190751;CRX:0.191707311811;KLF4:0.178339085832;PAX1,9:0.167819679459;GCM1,2:0.16010504993;STAT2,4,6:0.158595529777;GZF1:0.158376842597;TBX4,5:0.151766772571;GLI1..3:0.151298612947;PATZ1:0.143054093279;ADNP_IRX_SIX_ZHX:0.130893787726;HBP1_HMGB_SSRP1_UBTF:0.120158890305;YY1:0.116605370217;ZFP161:0.103132699184;NRF1:0.0806695148438;SPZ1:0.0803392703404;ZNF148:0.0721327110109;SP1:0.0625870600991;HMGA1,2:0.0591243457229;PAX3,7:0.0430209401416;BACH2:0.0376917066639;AHR_ARNT_ARNT2:0.0323140660345;GATA6:0.0145928597711;FOXD3:0.0117682985247;NKX6-1,2:0.0109087446039;SRF:0.0091954524829;HNF4A_NR2F1,2:-0.00104454928796;TFAP2{A,C}:-0.00225686961112;ETS1,2:-0.00643471933773;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.00836629114239;REST:-0.0138410582057;NFE2L1:-0.0144773604384;CDX1,2,4:-0.0160450734555;HOX{A4,D4}:-0.0197073367386;DBP:-0.0207563755665;T:-0.0396896034182;HOXA9_MEIS1:-0.0474509123564;HNF1A:-0.0495824921718;FOS_FOS{B,L1}_JUN{B,D}:-0.0605534041631;TBP:-0.0707977151126;NR5A1,2:-0.0886390517392;ATF6:-0.0902020798223;bHLH_family:-0.0942860621887;NR1H4:-0.0956705870457;TFAP2B:-0.0967478133037;NKX2-1,4:-0.106865426918;NFE2:-0.119707632759;MED-1{core}:-0.124706582553;NHLH1,2:-0.135269183785;HLF:-0.152462210826;ZNF384:-0.153580892681;ZBTB6:-0.155116543912;SPI1:-0.176153236556;CREB1:-0.194732796565;MAFB:-0.211236933241;FOX{F1,F2,J1}:-0.213501795502;PRRX1,2:-0.226508737478;FOSL2:-0.236130277666;SPIB:-0.243708650006;BPTF:-0.252824677436;NR6A1:-0.253228609878;TFCP2:-0.255870474262;FOXP3:-0.256138506647;FOXQ1:-0.256206218145;NKX3-2:-0.289506526753;EP300:-0.300323541918;MYFfamily:-0.310211432962;SOX5:-0.327896393632;OCT4_SOX2{dimer}:-0.337785093418;PDX1:-0.348300208708;HMX1:-0.359866498588;IKZF2:-0.364123262694;MTF1:-0.371243920817;TLX2:-0.375472412289;IRF7:-0.37602917884;NFKB1_REL_RELA:-0.38443594775;RFX1:-0.390244610721;MEF2{A,B,C,D}:-0.393017784214;ESRRA:-0.39728578485;FOXA2:-0.39916035969;NANOG:-0.399861754542;POU2F1..3:-0.402378677814;PPARG:-0.409488579333;POU5F1:-0.421883059437;BREu{core}:-0.426471184581;CEBPA,B_DDIT3:-0.43765428536;TGIF1:-0.450138008336;CUX2:-0.458429178748;ZNF423:-0.464217428453;SREBF1,2:-0.465808619012;ATF4:-0.498056817446;JUN:-0.509413438339;ESR1:-0.520428686403;DMAP1_NCOR{1,2}_SMARC:-0.522805449047;HIF1A:-0.525096668084;FOXM1:-0.53734640333;PAX2:-0.550728552935;PAX6:-0.569547083714;FOXO1,3,4:-0.575276232304;FOX{D1,D2}:-0.580948793412;RUNX1..3:-0.608032795318;FOXL1:-0.618088260309;POU6F1:-0.620256285951;IRF1,2:-0.641289800377;LMO2:-0.700763273784;ATF2:-0.735387476804;RORA:-0.756214926613;RREB1:-0.761504188806;ATF5_CREB3:-0.809600445887;NFIL3:-0.809791091951;VSX1,2:-0.814936758164;SNAI1..3:-0.855587927495;NKX2-3_NKX2-5:-0.937476821842;RFX2..5_RFXANK_RFXAP:-0.941183221562;ZEB1:-0.960605914737;MYOD1:-1.00465335646;FOXN1:-1.00507330259;HOX{A6,A7,B6,B7}:-1.88772106497 | |top_motifs=NKX2-2,8:1.10417249385;RXR{A,B,G}:1.06290978741;TLX1..3_NFIC{dimer}:1.03389285098;EVI1:1.03268474818;IKZF1:0.900095378962;FOX{I1,J2}:0.855693901681;GFI1:0.805377583584;AR:0.801499637301;UFEwm:0.792867560999;NKX3-1:0.791204528897;NR3C1:0.778670608916;TFAP4:0.765231381873;RXRA_VDR{dimer}:0.763397724305;POU3F1..4:0.716132809822;TFDP1:0.703140570838;POU1F1:0.692782918687;HOX{A5,B5}:0.677714686101;E2F1..5:0.674243070852;XCPE1{core}:0.661302793161;TOPORS:0.644142614052;ALX1:0.643540762777;CDC5L:0.621578713422;SMAD1..7,9:0.597268213646;SOX{8,9,10}:0.581499677339;MYB:0.577598690247;TEF:0.570008969874;TEAD1:0.546222160931;HSF1,2:0.531994678277;PAX5:0.525112529482;AIRE:0.507889593524;PBX1:0.503373845834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.502097904583;XBP1:0.495304487014;ZNF238:0.479520313539;EN1,2:0.477584744905;GFI1B:0.466158323013;ALX4:0.458713121245;NFY{A,B,C}:0.447279239631;NFATC1..3:0.438325667997;STAT1,3:0.426861889511;SOX17:0.422920534327;LHX3,4:0.387414320336;ZNF143:0.386232264195;GTF2A1,2:0.384604971263;MYBL2:0.373629488038;TAL1_TCF{3,4,12}:0.371218162105;ARID5B:0.366266913093;HES1:0.355120477812;STAT5{A,B}:0.350098700474;MAZ:0.332122356015;NFIX:0.328388683959;EBF1:0.324839120075;GTF2I:0.320379605479;PAX8:0.316831506437;ZBTB16:0.304061464642;GATA4:0.297625295238;ONECUT1,2:0.297427790941;MZF1:0.289556926201;ELK1,4_GABP{A,B1}:0.284691225488;NANOG{mouse}:0.284224214565;EGR1..3:0.276637015201;ELF1,2,4:0.273891146255;TP53:0.271388839475;MTE{core}:0.263015297121;PITX1..3:0.253858403742;PAX4:0.244988361555;ZIC1..3:0.238696300359;RBPJ:0.238520090394;LEF1_TCF7_TCF7L1,2:0.229008634427;SOX2:0.227240599913;FOXP1:0.224835033948;HIC1:0.222125783322;HAND1,2:0.217198471316;PRDM1:0.214490681621;NFE2L2:0.205052190751;CRX:0.191707311811;KLF4:0.178339085832;PAX1,9:0.167819679459;GCM1,2:0.16010504993;STAT2,4,6:0.158595529777;GZF1:0.158376842597;TBX4,5:0.151766772571;GLI1..3:0.151298612947;PATZ1:0.143054093279;ADNP_IRX_SIX_ZHX:0.130893787726;HBP1_HMGB_SSRP1_UBTF:0.120158890305;YY1:0.116605370217;ZFP161:0.103132699184;NRF1:0.0806695148438;SPZ1:0.0803392703404;ZNF148:0.0721327110109;SP1:0.0625870600991;HMGA1,2:0.0591243457229;PAX3,7:0.0430209401416;BACH2:0.0376917066639;AHR_ARNT_ARNT2:0.0323140660345;GATA6:0.0145928597711;FOXD3:0.0117682985247;NKX6-1,2:0.0109087446039;SRF:0.0091954524829;HNF4A_NR2F1,2:-0.00104454928796;TFAP2{A,C}:-0.00225686961112;ETS1,2:-0.00643471933773;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.00836629114239;REST:-0.0138410582057;NFE2L1:-0.0144773604384;CDX1,2,4:-0.0160450734555;HOX{A4,D4}:-0.0197073367386;DBP:-0.0207563755665;T:-0.0396896034182;HOXA9_MEIS1:-0.0474509123564;HNF1A:-0.0495824921718;FOS_FOS{B,L1}_JUN{B,D}:-0.0605534041631;TBP:-0.0707977151126;NR5A1,2:-0.0886390517392;ATF6:-0.0902020798223;bHLH_family:-0.0942860621887;NR1H4:-0.0956705870457;TFAP2B:-0.0967478133037;NKX2-1,4:-0.106865426918;NFE2:-0.119707632759;MED-1{core}:-0.124706582553;NHLH1,2:-0.135269183785;HLF:-0.152462210826;ZNF384:-0.153580892681;ZBTB6:-0.155116543912;SPI1:-0.176153236556;CREB1:-0.194732796565;MAFB:-0.211236933241;FOX{F1,F2,J1}:-0.213501795502;PRRX1,2:-0.226508737478;FOSL2:-0.236130277666;SPIB:-0.243708650006;BPTF:-0.252824677436;NR6A1:-0.253228609878;TFCP2:-0.255870474262;FOXP3:-0.256138506647;FOXQ1:-0.256206218145;NKX3-2:-0.289506526753;EP300:-0.300323541918;MYFfamily:-0.310211432962;SOX5:-0.327896393632;OCT4_SOX2{dimer}:-0.337785093418;PDX1:-0.348300208708;HMX1:-0.359866498588;IKZF2:-0.364123262694;MTF1:-0.371243920817;TLX2:-0.375472412289;IRF7:-0.37602917884;NFKB1_REL_RELA:-0.38443594775;RFX1:-0.390244610721;MEF2{A,B,C,D}:-0.393017784214;ESRRA:-0.39728578485;FOXA2:-0.39916035969;NANOG:-0.399861754542;POU2F1..3:-0.402378677814;PPARG:-0.409488579333;POU5F1:-0.421883059437;BREu{core}:-0.426471184581;CEBPA,B_DDIT3:-0.43765428536;TGIF1:-0.450138008336;CUX2:-0.458429178748;ZNF423:-0.464217428453;SREBF1,2:-0.465808619012;ATF4:-0.498056817446;JUN:-0.509413438339;ESR1:-0.520428686403;DMAP1_NCOR{1,2}_SMARC:-0.522805449047;HIF1A:-0.525096668084;FOXM1:-0.53734640333;PAX2:-0.550728552935;PAX6:-0.569547083714;FOXO1,3,4:-0.575276232304;FOX{D1,D2}:-0.580948793412;RUNX1..3:-0.608032795318;FOXL1:-0.618088260309;POU6F1:-0.620256285951;IRF1,2:-0.641289800377;LMO2:-0.700763273784;ATF2:-0.735387476804;RORA:-0.756214926613;RREB1:-0.761504188806;ATF5_CREB3:-0.809600445887;NFIL3:-0.809791091951;VSX1,2:-0.814936758164;SNAI1..3:-0.855587927495;NKX2-3_NKX2-5:-0.937476821842;RFX2..5_RFXANK_RFXAP:-0.941183221562;ZEB1:-0.960605914737;MYOD1:-1.00465335646;FOXN1:-1.00507330259;HOX{A6,A7,B6,B7}:-1.88772106497 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11460-119B2;search_select_hide=table117:FF:11460-119B2 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Fibroblast - Cardiac, donor6 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12061 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12061
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12061
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.33 |
| 10 | 10 | 0.714 |
| 100 | 100 | 0.824 |
| 101 | 101 | 0.561 |
| 102 | 102 | 0.451 |
| 103 | 103 | 0.322 |
| 104 | 104 | 0.852 |
| 105 | 105 | 0.0736 |
| 106 | 106 | 0.241 |
| 107 | 107 | 0.759 |
| 108 | 108 | 0.514 |
| 109 | 109 | 0.508 |
| 11 | 11 | 0.62 |
| 110 | 110 | 0.137 |
| 111 | 111 | 0.0725 |
| 112 | 112 | 0.236 |
| 113 | 113 | 0.0712 |
| 114 | 114 | 0.0775 |
| 115 | 115 | 0.388 |
| 116 | 116 | 0.408 |
| 117 | 117 | 0.933 |
| 118 | 118 | 0.374 |
| 119 | 119 | 0.372 |
| 12 | 12 | 0.165 |
| 120 | 120 | 0.183 |
| 121 | 121 | 0.79 |
| 122 | 122 | 0.0518 |
| 123 | 123 | 0.0583 |
| 124 | 124 | 0.19 |
| 125 | 125 | 0.0988 |
| 126 | 126 | 0.276 |
| 127 | 127 | 0.209 |
| 128 | 128 | 0.921 |
| 129 | 129 | 0.39 |
| 13 | 13 | 0.666 |
| 130 | 130 | 0.0669 |
| 131 | 131 | 0.998 |
| 132 | 132 | 0.408 |
| 133 | 133 | 0.531 |
| 134 | 134 | 0.534 |
| 135 | 135 | 0.806 |
| 136 | 136 | 0.236 |
| 137 | 137 | 0.13 |
| 138 | 138 | 0.525 |
| 139 | 139 | 0.018 |
| 14 | 14 | 0.211 |
| 140 | 140 | 0.886 |
| 141 | 141 | 0.959 |
| 142 | 142 | 0.0495 |
| 143 | 143 | 0.396 |
| 144 | 144 | 0.99 |
| 145 | 145 | 0.561 |
| 146 | 146 | 0.888 |
| 147 | 147 | 0.428 |
| 148 | 148 | 0.192 |
| 149 | 149 | 0.473 |
| 15 | 15 | 0.178 |
| 150 | 150 | 0.308 |
| 151 | 151 | 0.273 |
| 152 | 152 | 0.823 |
| 153 | 153 | 0.462 |
| 154 | 154 | 0.671 |
| 155 | 155 | 0.00425 |
| 156 | 156 | 0.916 |
| 157 | 157 | 0.3 |
| 158 | 158 | 0.00735 |
| 159 | 159 | 0.146 |
| 16 | 16 | 0.988 |
| 160 | 160 | 0.989 |
| 161 | 161 | 0.633 |
| 162 | 162 | 0.782 |
| 163 | 163 | 0.396 |
| 164 | 164 | 0.863 |
| 165 | 165 | 0.17 |
| 166 | 166 | 0.525 |
| 167 | 167 | 0.182 |
| 168 | 168 | 0.433 |
| 169 | 169 | 0.715 |
| 17 | 17 | 0.548 |
| 18 | 18 | 0.187 |
| 19 | 19 | 0.442 |
| 2 | 2 | 0.904 |
| 20 | 20 | 0.753 |
| 21 | 21 | 0.235 |
| 22 | 22 | 0.622 |
| 23 | 23 | 0.289 |
| 24 | 24 | 0.866 |
| 25 | 25 | 0.112 |
| 26 | 26 | 0.444 |
| 27 | 27 | 0.625 |
| 28 | 28 | 0.245 |
| 29 | 29 | 0.436 |
| 3 | 3 | 0.954 |
| 30 | 30 | 0.978 |
| 31 | 31 | 0.512 |
| 32 | 32 | 0.00202 |
| 33 | 33 | 0.931 |
| 34 | 34 | 0.796 |
| 35 | 35 | 0.0903 |
| 36 | 36 | 0.0652 |
| 37 | 37 | 0.544 |
| 38 | 38 | 0.524 |
| 39 | 39 | 0.273 |
| 4 | 4 | 0.0596 |
| 40 | 40 | 0.00893 |
| 41 | 41 | 0.429 |
| 42 | 42 | 0.782 |
| 43 | 43 | 0.126 |
| 44 | 44 | 0.248 |
| 45 | 45 | 0.323 |
| 46 | 46 | 0.542 |
| 47 | 47 | 0.802 |
| 48 | 48 | 0.758 |
| 49 | 49 | 0.0893 |
| 5 | 5 | 0.326 |
| 50 | 50 | 0.497 |
| 51 | 51 | 0.484 |
| 52 | 52 | 0.45 |
| 53 | 53 | 0.281 |
| 54 | 54 | 0.55 |
| 55 | 55 | 0.551 |
| 56 | 56 | 0.457 |
| 57 | 57 | 0.966 |
| 58 | 58 | 0.0725 |
| 59 | 59 | 0.427 |
| 6 | 6 | 0.942 |
| 60 | 60 | 0.0956 |
| 61 | 61 | 0.54 |
| 62 | 62 | 0.12 |
| 63 | 63 | 0.858 |
| 64 | 64 | 0.599 |
| 65 | 65 | 0.37 |
| 66 | 66 | 0.476 |
| 67 | 67 | 0.816 |
| 68 | 68 | 0.465 |
| 69 | 69 | 0.73 |
| 7 | 7 | 0.235 |
| 70 | 70 | 0.0186 |
| 71 | 71 | 0.388 |
| 72 | 72 | 0.553 |
| 73 | 73 | 0.279 |
| 74 | 74 | 0.967 |
| 75 | 75 | 0.276 |
| 76 | 76 | 0.879 |
| 77 | 77 | 0.991 |
| 78 | 78 | 0.673 |
| 79 | 79 | 0.111 |
| 8 | 8 | 0.922 |
| 80 | 80 | 0.266 |
| 81 | 81 | 0.29 |
| 82 | 82 | 0.0362 |
| 83 | 83 | 0.54 |
| 84 | 84 | 0.782 |
| 85 | 85 | 0.1 |
| 86 | 86 | 0.843 |
| 87 | 87 | 0.014 |
| 88 | 88 | 0.58 |
| 89 | 89 | 0.637 |
| 9 | 9 | 0.727 |
| 90 | 90 | 0.605 |
| 91 | 91 | 0.988 |
| 92 | 92 | 0.769 |
| 93 | 93 | 0.566 |
| 94 | 94 | 0.0626 |
| 95 | 95 | 0.637 |
| 96 | 96 | 0.451 |
| 97 | 97 | 0.516 |
| 98 | 98 | 0.0484 |
| 99 | 99 | 0.0313 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12061
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
