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FFCP PHASE1:Mm9::chr1:88479075..88479140,-: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=18582
|EntrezGene=18582
|HGNC=
|HGNC=
|MCL_coexpression_id=1511
|TSSclassifier=NA
|UniProt=O55057,Q3TDQ8
|UniProt=O55057,Q3TDQ8
|association_with_transcript=0bp_to_ENSMUST00000027444,ENSMUST00000146220,ENSMUST00000148683,ENSMUST00000150653,NM_008801,uc007bvq.1,uc011wok.1_5end
|association_with_transcript=0bp_to_ENSMUST00000027444,ENSMUST00000146220,ENSMUST00000148683,ENSMUST00000150653,NM_008801,uc007bvq.1,uc011wok.1_5end
|cluster_id=chr1:88479075..88479140,-
|description=CAGE_peak_1_at_Pde6d_5end
|description=CAGE_peak_1_at_Pde6d_5end
|id=chr1:88479075..88479140,-
|id=chr1:88479075..88479140,-
|ontology_enrichment_celltype=CL:0000221!1.51e-14!44;CL:0000133!1.51e-14!44;CL:0002319!5.55e-14!43;CL:0000055!1.23e-12!50;CL:0000117!2.72e-11!23;CL:0000337!2.72e-11!23;CL:0000540!9.93e-09!33;CL:0000047!9.93e-09!33;CL:0000031!9.93e-09!33;CL:0000404!9.93e-09!33;CL:0000393!2.75e-08!39;CL:0000211!2.75e-08!39;CL:0002321!4.18e-07!70;CL:0000220!4.18e-07!70;CL:0000333!6.79e-07!10;CL:0000095!6.79e-07!10;CL:0000243!6.79e-07!10;CL:0000123!6.79e-07!10;CL:0000125!6.79e-07!10;CL:0000030!6.79e-07!10;CL:0000339!6.79e-07!10
|ontology_enrichment_celltype_v019_2=CL:0000221,1.51e-14,44;CL:0000133,1.51e-14,44;CL:0002319,5.55e-14,43;CL:0000117,2.72e-11,23;CL:0000337,2.72e-11,23;CL:0000540,9.93e-09,33;CL:0000047,9.93e-09,33;CL:0000031,9.93e-09,33;CL:0000404,9.93e-09,33;CL:0000393,2.75e-08,39;CL:0000211,2.75e-08,39;CL:0002321,4.16e-07,70;CL:0000333,6.79e-07,10;CL:0000095,6.79e-07,10;CL:0000243,6.79e-07,10;CL:0000123,6.79e-07,10;CL:0000125,6.79e-07,10;CL:0000030,6.79e-07,10;CL:0000339,6.79e-07,10
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0000073!1.53e-20!75;UBERON:0001016!1.53e-20!75;UBERON:0001017!1.13e-19!73;UBERON:0005743!1.13e-19!73;UBERON:0001049!4.72e-17!52;UBERON:0005068!4.72e-17!52;UBERON:0006241!4.72e-17!52;UBERON:0007135!4.72e-17!52;UBERON:0000955!4.34e-14!50;UBERON:0006238!4.34e-14!50;UBERON:0002616!9.50e-14!49;UBERON:0002346!1.42e-13!71;UBERON:0003075!1.42e-13!71;UBERON:0007284!1.42e-13!71;UBERON:0000033!1.99e-13!63;UBERON:0004121!2.91e-13!102;UBERON:0000924!2.91e-13!102;UBERON:0006601!2.91e-13!102;UBERON:0002020!1.27e-11!34;UBERON:0003080!2.12e-11!40;UBERON:0002780!3.59e-11!39;UBERON:0001890!3.59e-11!39;UBERON:0006240!3.59e-11!39;UBERON:0003056!3.52e-10!49;UBERON:0002791!7.75e-09!29;UBERON:0003528!7.75e-09!29;UBERON:0001893!7.75e-09!29;UBERON:0003076!9.16e-07!12;UBERON:0003057!9.16e-07!12
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.53e-20,75;UBERON:0001017,1.13e-19,73;UBERON:0010314,1.57e-18,92;UBERON:0001049,4.72e-17,52;UBERON:0005068,4.72e-17,52;UBERON:0006241,4.72e-17,52;UBERON:0007135,4.72e-17,52;UBERON:0000073,1.09e-16,54;UBERON:0002346,4.04e-15,64;UBERON:0003075,4.04e-15,64;UBERON:0007284,4.04e-15,64;UBERON:0004121,2.88e-14,95;UBERON:0000924,2.88e-14,95;UBERON:0006601,2.88e-14,95;UBERON:0000955,4.98e-14,47;UBERON:0006238,4.98e-14,47;UBERON:0002616,1.09e-13,46;UBERON:0002020,1.27e-11,34;UBERON:0010371,1.45e-11,73;UBERON:0003080,2.12e-11,40;UBERON:0002780,3.59e-11,39;UBERON:0001890,3.59e-11,39;UBERON:0006240,3.59e-11,39;UBERON:0003056,3.52e-10,49;UBERON:0003528,7.75e-09,29;UBERON:0002791,7.75e-09,29;UBERON:0001893,7.75e-09,29;UBERON:0003076,9.16e-07,12;UBERON:0003057,9.16e-07,12
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5635944646,5.85447228840512,6.11415178489297,5.12484516262319,4.87655388779482,8.11443420150492,4.79575401179634,4.97071450469541,78.9170114157866,7.47582730219894,7.1147150896552,5.83353565032143,10.074466231263,7.09615727061268,6.21993364822496,6.90083239672936,8.703325587334,31.1643515865548,37.1558708072646,4.74016680942267,10.5417111950885,7.08705604437308,7.01572444080093,6.08690765269437,6.95384741734427,6.25016337503838,6.79371825003055,5.65412119709627,5.25826965919499,3.7305688500631,5.75001496364539,6.73482891482306,5.49321440253374,9.06921534460846,2.66383144048878,1.88399098879899,3.18980771091749,6.56844619709447,5.81815673898664,4.94509385521616,5.35920947697665,3.51100472824754,12.9892923801925,8.28585425712918,11.4579102687879,7.56154002312225,10.2762377965596,6.7985450765073,11.4753825039407,9.90706647093285,7.25027854374727,8.28416498802912,7.78405106881325,7.18244772121856,7.17081144167364,7.77941494618541,8.59413966774727,9.55986243940074,6.44515510624684,7.2112270033613,7.38114182061175,7.07552192938633,4.81610669791456,6.03604292435444,10.6751318515666,10.0519489275645,10.2235134740992,7.1444053692461,10.3137050090921,10.2241886845764,15.6592642305257,7.80154276712306,6.51451579532289,8.16388708332953,9.29901140794552,6.83128158171944,7.71696919405711,7.53070010235921,10.2439664808753,8.15516105457313,7.87663860305998,5.61142271657738,6.64356101495375,9.45643030805409,10.6400071224119,9.60608415352989,10.0311437710194,9.74261253957989,9.59119594626174,8.37997110788363,9.37312827137333,11.9119366324538,7.65163857547391
|phase1_expression=29.4673878672821,18.1467211972468,13.1949779422965,4.23449895829562,6.51164448930251,9.56911849897772,5.84031601488814,4.77756296733832,0.563154888606667,0.70219357896598,1.36974374580404,2.31339261086476,3.59521532855532,4.19617931611188,3.33109761815663,3.64455481301687,8.39474253753776,4.88966356305268,6.58149281307546,2.54633791078818,19.6450000248971,5.56029326724958,7.31359409589019,4.31979541542198,5.50582274561208,14.3557991028755,14.2151458732495,9.69620547086501,6.46079626151671,8.31699428207772,8.42575940490158,4.44521471421742,5.53558308826113,0,5.19932915552294,6.98185510505668,8.77928231928187,20.5080499061085,13.2827008569046,13.6116173433188,9.41170380849623,15.7100461540443,20.8769451803396,7.67970589651021,9.12392380975631,7.52541683862894,26.6013057078333,25.5089432965122,16.9158360705543,18.6652703111312,19.4581126059254,25.8754615856949,6.71130424230945,6.5282592781021,4.36921938885203,9.00408026125814,10.0286703978565,5.67239301505187,20.8385954685386,13.2247744818008,13.9442908771359,17.2810711355257,34.6824970483344,20.2477436388315,1.97773272513395,17.0515227587064,28.4620104992484,45.721978333265,17.3161652555158,14.4456354014909,11.9885227970288,37.9915809257059,30.7007271922743,15.923803897944,20.5109307979026,11.9498442259303,3.30347642998166,18.8977260366078,16.4358990584181,15.4306956644327,29.7334841707831,12.5019208933622,23.451371916116,22.5105044012672,21.5445529365302,19.4454866412621,19.362548588678,18.0807462450542,11.5861075799772,14.81202578093,4.92769630792852,5.16254326188832,0,3.77792234146472,1.29955283489534,2.68816132258401,12.0782201313307,17.2134625803838,11.950156211732,13.0735642568826,19.5772353489586,6.41632387071589,7.64415719119937,7.11066703153331,4.97929394325792,5.32055717497707,2.52762222507392,6.16592950482924,6.47344709117929,6.08612770165782,9.02123699183906,7.00270600117925,8.07154240396205,9.49552635481522,4.58595957829249,6.03199638382442,4.94389935468748,4.48258006451726,6.19227386364912,9.22071044700232,8.39197770149496,5.81850303762267,9.31958806090611,9.07620470735796,13.823482649688,5.62005521458901,4.07371423320129,7.7987355029143,3.43089613097275,10.4853447583376,10.0650132620098,15.8324483662209,9.56033761057521,11.2514801225345,13.0906468072523,11.6813709408785,6.61955865027056,5.97153458928446,3.28539585963777,7.57590681191306,6.11566081924707,12.1848115349741,6.48223667299257,11.0014517020072,6.05524842446818,7.68682321709099,10.8694000489285,5.43277078551933,5.82033580918674,8.69887968771969,7.38994721488585,9.86380795924087,7.50727572909114,7.3132954969655,6.58502836505419,5.7719937377363,7.72434506044558,13.1247432628505,13.3556844715929,9.11353399156208,8.44293815931946,10.8037236876609,12.0739815148457,12.0026181365916,11.8785676923281,10.4640275137684,12.6088498657821,7.58974725386602,11.6837493438571,11.1633875573785,9.40398190731926,12.4269989311532,9.87975518809728,9.66286215074677,9.04246778825747,8.64398743985989,5.94753809370836,2.90895623329899,5.33220626338085,5.34144345279009,5.41243337552792,5.84882221407693,4.89231696458715,8.56015317506516,8.54152310780121,8.39964669092456,8.29406189040889,5.96869416123452,6.62877896205008,6.29173586057955,7.3486936957396,4.58024928485045,12.1387456609972,6.740662243974,7.88954149711563,6.51684249105006,6.59438456369928,5.89140887078676,7.08249215791682,7.38050739898011,4.23896565171712,5.67626954040282,4.15033677922008,6.00642380577939,7.66580080941492,7.19558759631532,6.28866376304359,7.95884627182976,7.38414970166117,6.04161888646702,4.70192157647603,4.3929826110093,1.43768206527355,7.07067800570156,4.05648975048929,2.77836765741823,3.04975602987251,3.37710464954357,6.46636165583116,8.33762211790133,6.35563408123901,5.7713329163564,8.91822943496308,7.70528784232352,8.80761471278251,7.02481132288076,4.25614889086716,5.09368786192182,6.37819074629948,7.20998584749247,8.63424909329478,8.82359257347221,6.03165135757089,3.80733978673097,3.93411418415229,2.48343071674259,11.7201930691088,11.1351102262593,7.37707254195039,9.3414243065618,7.57219726599016,7.02789739733949,7.97066571611356,7.64700153448166,6.68396022247182,5.09537755419898,7.69140333182299,9.35218745316198,5.13874111330481,11.8888887076069,5.53566332312248,10.3278050127008,8.1443479676788,5.60898418106621,2.65490276679926,3.8844901784797,8.76738315197778,4.52652191414155,6.496641643377,4.61152721915891,5.16856586336442,5.08947221268508,4.9909632973861,4.42451461110142,5.27093042874994,3.09406629744561,13.9580238359053,7.92268813737765,10.6074120701859,11.3598628566744,11.5271151867478,11.5939731441346,10.86023535974,8.52501857520878,4.69343416127421,6.35496212591461,3.08739757276947,5.44124634706884,5.00539722757307,5.72972786817481,4.17803204010978,2.79039529566604,5.24665505933731,12.2380699326936,6.4930934703184,8.66824845445534,6.11141940320049,5.46268525313604,6.97140561377228,8.69357058184786,4.58941760983409,5.318155188299,3.17859939750175,3.81868247206045,6.95939185878498,7.31950081656655,5.18425635944646,5.85447228840512,6.11415178489297,5.12484516262319,4.87655388779482,8.11443420150492,4.79575401179634,4.97071450469541,78.9170114157866,7.47582730219894,7.1147150896552,5.83353565032143,10.074466231263,7.09615727061268,6.21993364822496,6.90083239672936,8.703325587334,31.1643515865548,37.1558708072646,4.74016680942267,10.5417111950885,7.08705604437308,7.01572444080093,6.08690765269437,6.95384741734427,6.25016337503838,6.79371825003055,5.65412119709627,5.25826965919499,3.7305688500631,5.75001496364539,6.73482891482306,5.49321440253374,9.06921534460846,2.66383144048878,1.88399098879899,3.18980771091749,6.56844619709447,5.81815673898664,4.94509385521616,5.35920947697665,3.51100472824754,12.9892923801925,8.28585425712918,11.4579102687879,7.56154002312225,10.2762377965596,6.7985450765073,11.4753825039407,9.90706647093285,7.25027854374727,8.28416498802912,7.78405106881325,7.18244772121856,7.17081144167364,7.77941494618541,8.59413966774727,9.55986243940074,6.44515510624684,7.2112270033613,7.38114182061175,7.07552192938633,4.81610669791456,6.03604292435444,10.6751318515666,10.0519489275645,10.2235134740992,7.1444053692461,10.3137050090921,10.2241886845764,15.6592642305257,7.80154276712306,6.51451579532289,8.16388708332953,9.29901140794552,6.83128158171944,7.71696919405711,7.53070010235921,10.2439664808753,8.15516105457313,7.87663860305998,5.61142271657738,6.64356101495375,9.45643030805409,10.6400071224119,9.60608415352989,10.0311437710194,9.74261253957989,9.59119594626174,8.37997110788363,9.37312827137333,11.9119366324538,7.65163857547391
|short_description=p1@Pde6d
|short_description=p1@Pde6d
}}
}}

Latest revision as of 17:48, 1 October 2015

Short description:p1@Pde6d
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Pde6d_5end
Coexpression cluster:MCL_coexpression_mm9:1511
Association with transcript: 0bp_to_ENSMUST00000027444, ENSMUST00000146220, ENSMUST00000148683, ENSMUST00000150653, NM_008801, uc007bvq.1, uc011wok.1_5end
EntrezGene:Pde6d
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Pde6d

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G729.47
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I518.15
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I613.19
CD326+ enterocyte, pool1.CNhs13542.11848-124I34.23
CD326+ enterocyte, pool2.CNhs13197.11849-124I46.51
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I79.57
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I85.84
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E94.78
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.56
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.70
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E61.37
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F12.31
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E43.60
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E84.20
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A13.33
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A33.64
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A58.39
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A24.89
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A46.58
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A62.55
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A319.65
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H25.56
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I97.31
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D14.32
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D25.51
GP2+ M cell, pool1.CNhs13228.11845-124H914.36
GP2+ M cell, pool2.CNhs13231.11846-124I114.22
GP2+ M cell, pool3.CNhs13240.11847-124I29.70
Ileum epithelium, pool1.CNhs13199.10252-104B96.46
Ileum epithelium, pool2.CNhs13232.10253-104C18.32
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C88.43
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I34.45
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G65.54
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F55.20
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F66.98
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F78.78
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G820.51
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H113.28
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H313.61
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G99.41
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H215.71
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H420.88
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D87.68
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D99.12
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B37.53
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B726.60
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C225.51
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B816.92
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C318.67
Mouse Astrocytes, donor2.CNhs12078.11552-120C419.46
Mouse Astrocytes, donor3.CNhs12107.11633-122C425.88
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A26.71
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I96.53
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A14.37
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C19.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E110.03
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C55.67
Mouse Granule cells, donor1.CNhs12131.11713-123C320.84
Mouse Granule cells, donor2.CNhs12357.11731-123E313.22
Mouse Granule cells, donor3.CNhs12108.11636-122C713.94
Mouse Meningeal cells, donor1.CNhs12132.11716-123C617.28
Mouse Meningeal cells, donor3.CNhs12109.11639-122D134.68
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C720.25
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E71.98
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D217.05
Mouse Microglia, donor1.CNhs12629.11718-123C828.46
Mouse Microglia, donor2.CNhs12634.11736-123E845.72
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D517.32
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F514.45
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D911.99
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F137.99
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D530.70
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D215.92
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F220.51
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D611.95
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D33.30
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F318.90
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D716.44
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D415.43
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F429.73
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D812.50
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E423.45
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E522.51
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I621.54
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D619.45
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F619.36
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E118.08
Mouse Schwann, donor1.CNhs12507.11728-123D911.59
Mouse Schwann, donor2.CNhs12573.11746-123F914.81
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G34.93
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F75.16
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C83.78
Mouse hepatocyte, donor6.CNhs13090.11822-124F41.30
Mouse hepatocyte, donor8.CNhs13091.11824-124F62.69
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A712.08
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I717.21
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E311.95
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I813.07
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G619.58
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H16.42
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I87.64
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B67.11
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G14.98
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G25.32
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G32.53
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B66.17
accessory axillary lymph node, adult.CNhs10475.1063-29H96.47
adrenal gland, adult.CNhs10508.49-24D76.09
adrenal gland, embryo E14.CNhs11038.406-44C59.02
adrenal gland, embryo E16.CNhs11004.1254-43D67.00
adrenal gland, embryo E17.CNhs11043.1263-45I18.07
adrenal gland, embryo E18.CNhs11026.1262-18F59.50
adrenal gland, neonate N00.CNhs11191.1311-23C14.59
adrenal gland, neonate N25.CNhs11223.1377-27I36.03
amnion, adult pregnant day17.5.CNhs10488.583-22A84.94
aorta, adult.CNhs10498.46-23H14.48
bone (os femoris), adult.CNhs10483.56-12G26.19
bone (os femoris), neonate N02.CNhs11227.1985-43F59.22
bone (os femoris), neonate N16.CNhs11225.1525-43A68.39
bone (os femoris), neonate N20.CNhs11195.1350-25C35.82
cecum, adult.CNhs10467.37-13H49.32
cerebellum, adult.CNhs10494.15-8B29.08
cerebellum, neonate N30.CNhs11135.1395-42I213.82
colon, adult.CNhs10468.36-18H75.62
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C74.07
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D17.80
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D43.43
corpora quadrigemina, adult.CNhs10501.16-22A410.49
corpus striatum, adult.CNhs10487.19-21D810.07
corpus striatum, neonate N00.CNhs11226.630-43F115.83
cortex, adult.CNhs10473.12-14D59.56
cortex, neonate N30.CNhs11107.1392-42F211.25
diencephalon, adult.CNhs10482.20-12F213.09
diencephalon, neonate N30.CNhs11201.1388-42B211.68
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B16.62
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A25.97
epididymis, adult.CNhs10490.58-23B23.29
eyeball, adult.CNhs10484.31-12G47.58
eyeball, embryo E12.CNhs11016.345-16C66.12
eyeball, embryo E14.CNhs10521.399-16E212.18
eyeball, embryo E15.CNhs10593.426-16C96.48
eyeball, embryo E17.CNhs11023.1261-18D411.00
eyeball, neonate N00.CNhs11207.633-15C66.06
eyeball, neonate N01.CNhs11140.1532-43E77.69
eyeball, neonate N02.CNhs11205.1551-44G810.87
eyeball, neonate N16.CNhs11188.777-19A25.43
forelimb, embryo E11.CNhs10596.335-25E25.82
forelimb, embryo E12.CNhs10600.359-14H28.70
forelimb, embryo E13.CNhs10589.384-1E27.39
forelimb, embryo E14.CNhs10577.413-26A89.86
forelimb, embryo E15.CNhs11007.437-20E77.51
forelimb, embryo E17.CNhs10598.1517-43C47.31
forelimb, embryo E18.CNhs11008.1520-43B56.59
gonad, embryo E13.CNhs11044.1564-45I65.77
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C87.72
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D213.12
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D513.36
heart, embryo E11.CNhs10586.331-24E99.11
heart, embryo E12.CNhs11015.353-12F58.44
heart, embryo E13.CNhs11013.376-3I910.80
heart, embryo E14.CNhs10597.403-26D412.07
heart, embryo E15.CNhs11017.431-16C812.00
heart, embryo E16.CNhs11021.457-17C611.88
heart, embryo E17.CNhs11025.479-18E510.46
heart, embryo E18.CNhs11030.1283-20G312.61
heart, neonate N00.CNhs11213.639-21E37.59
heart, neonate N03.CNhs11221.1349-25I211.68
heart, neonate N10.CNhs11118.749-24G111.16
heart, neonate N16.CNhs11209.782-15G19.40
heart, neonate N20.CNhs11127.821-26I612.43
heart, neonate N25.CNhs11196.1351-25D39.88
heart, neonate N30.CNhs11202.1390-42D29.66
hippocampus, adult.CNhs10478.13-16E89.04
hippocampus, neonate N00.CNhs11228.627-43G18.64
intestinal mucosa, adult.CNhs10506.860-29I35.95
intestine, adult.CNhs10496.178-9A32.91
intestine, embryo E12.CNhs11019.1251-16I55.33
intestine, embryo E13.CNhs11010.381-16D55.34
intestine, embryo E15.CNhs10602.976-16D85.41
intestine, embryo E16.CNhs10585.463-22H45.85
intestine, embryo E17.CNhs10582.482-18D34.89
intestine, embryo E18.CNhs10526.1289-20F78.56
intestine, neonate N00.CNhs11126.644-26D18.54
intestine, neonate N01.CNhs11192.1322-23E98.40
intestine, neonate N06.CNhs11102.688-20B88.29
intestine, neonate N07.CNhs11095.720-20F25.97
intestine, neonate N10.CNhs11098.755-23A56.63
intestine, neonate N20.CNhs11187.827-18D16.29
intestine, neonate N25.CNhs11121.1352-25E37.35
intestine, neonate N30.CNhs11131.1384-42G14.58
kidney, embryo E14.CNhs10606.411-4I912.14
kidney, embryo E15.CNhs10997.434-16F86.74
kidney, embryo E16.CNhs10584.464-22A57.89
kidney, embryo E17.CNhs11028.483-18I26.52
kidney, embryo E18.CNhs11001.1288-20C76.59
kidney, neonate N00.CNhs11214.646-21G75.89
kidney, neonate N10.CNhs11206.758-6D57.08
kidney, neonate N20.CNhs11113.832-19I17.38
kidney, neonate N25.CNhs11122.1353-25F34.24
kidney, neonate N30.CNhs11203.1385-42H15.68
liver, adult pregnant day01.CNhs10466.508-5B24.15
liver, embryo E12.CNhs10601.355-15F86.01
liver, embryo E13.CNhs10524.378-3H67.67
liver, embryo E14.CNhs10594.409-16E17.20
liver, embryo E15.CNhs10520.433-16D76.29
liver, embryo E16.CNhs10523.462-17F57.96
liver, embryo E17.CNhs10510.481-18A37.38
liver, embryo E18.CNhs10579.499-43G46.04
liver, neonate N00.CNhs11117.641-24F44.70
liver, neonate N03.CNhs11123.1345-25G24.39
liver, neonate N06.CNhs11101.684-20A81.44
liver, neonate N07.CNhs11103.716-20H27.07
liver, neonate N10.CNhs11115.751-24B94.06
liver, neonate N20.CNhs11220.823-25A32.78
liver, neonate N25.CNhs11198.1368-26H13.05
liver, neonate N30.CNhs11106.1382-42D13.38
lung, adult.CNhs10474.28-22B16.47
lung, embryo E12.CNhs10522.354-16G28.34
lung, embryo E14.CNhs10604.404-26F86.36
lung, embryo E15.CNhs11020.432-17C55.77
lung, embryo E16.CNhs10998.458-17B68.92
lung, embryo E17.CNhs10605.480-44A67.71
lung, embryo E18.CNhs10583.1287-20I68.81
lung, neonate N00.CNhs11224.640-42C67.02
lung, neonate N06.CNhs11212.683-20E54.26
lung, neonate N07.CNhs11111.715-19A35.09
lung, neonate N10.CNhs11219.750-23E66.38
lung, neonate N20.CNhs11109.822-18A47.21
lung, neonate N25.CNhs11119.1359-25C78.63
lung, neonate N30.CNhs11133.1394-42H28.82
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A16.03
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A13.81
mammary gland, adult lactating day02.CNhs10480.595-22B63.93
mammary gland, adult pregnant day19.CNhs10476.588-5H22.48
medulla oblongata, adult.CNhs10477.17-12C211.72
medulla oblongata, neonate N30.CNhs11200.1396-42A311.14
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C77.38
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C29.34
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E17.57
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E27.03
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E37.97
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D77.65
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D86.68
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D95.10
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D47.69
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D59.35
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D65.14
olfactory brain, adult.CNhs10489.18-22I911.89
ovary, adult.CNhs10507.91-2I75.54
ovary, embryo E18.CNhs11040.505-44H710.33
ovary, neonate N00.CNhs11217.1299-22I48.14
oviduct, adult pregnant day01.CNhs10500.988-6G65.61
pancreas, adult.CNhs10486.34-16E42.65
pancreas, embryo E14.CNhs11012.405-44F43.88
pancreas, embryo E15.CNhs11042.1556-45F28.77
pancreas, embryo E16.CNhs11003.460-26E54.53
pancreas, embryo E17.CNhs10599.1558-45G36.50
pancreas, embryo E18.CNhs10580.1535-43I74.61
pancreas, neonate N00.CNhs11105.645-26G95.17
pancreas, neonate N01.CNhs11138.1531-43D75.09
pancreas, neonate N02.CNhs11139.1539-43D84.99
pancreas, neonate N16.CNhs11136.787-43B64.42
pancreas, neonate N25.CNhs11094.1555-45E25.27
pancreas, neonate N30.CNhs11182.1548-44H53.09
pituitary gland, adult.CNhs10493.21-1G813.96
pituitary gland, embryo E12.CNhs11018.346-16E67.92
pituitary gland, embryo E13.CNhs11009.370-44C710.61
pituitary gland, embryo E14.CNhs11037.398-44A511.36
pituitary gland, embryo E15.CNhs10592.427-16B911.53
pituitary gland, embryo E16.CNhs11036.449-43F611.59
pituitary gland, embryo E17.CNhs11039.1265-44F510.86
pituitary gland, neonate N00.CNhs11190.1308-22E98.53
placenta, adult pregnant day10.CNhs10472.539-13I74.69
placenta, adult pregnant day17.CNhs10464.577-18G36.35
prostate, adult.CNhs10470.859-1F83.09
skin, adult.CNhs10492.30-1C35.44
skin, neonate N00.CNhs11124.650-25G45.01
skin, neonate N03.CNhs11215.662-22H35.73
skin, neonate N06.CNhs11097.693-20I54.18
skin, neonate N10.CNhs11108.762-6C42.79
small intestine, neonate N16.CNhs11114.790-21I15.25
spinal cord, adult.CNhs10505.24-13C912.24
spleen, adult.CNhs10465.25-2G26.49
spleen, embryo E16.CNhs11035.461-43C18.67
spleen, embryo E18.CNhs11011.1271-21F26.11
spleen, neonate N10.CNhs11116.752-24D15.46
spleen, neonate N20.CNhs11112.824-19H16.97
spleen, neonate N25.CNhs11099.1354-25G38.69
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C64.59
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C95.32
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D33.18
stomach, adult.CNhs10503.33-1H63.82
stomach, embryo E12.CNhs10588.356-43E36.96
stomach, embryo E15.CNhs10603.1252-16G87.32
stomach, embryo E16.CNhs11022.459-17D45.18
stomach, embryo E17.CNhs11006.1035-18D55.85
stomach, embryo E18.CNhs10999.1286-20C66.11
stomach, neonate N03.CNhs11193.1340-24B85.12
stomach, neonate N07.CNhs11210.718-18A94.88
stomach, neonate N25.CNhs11104.1355-25E48.11
stomach, neonate N30.CNhs11134.1386-42I14.80
submandibular gland, adult.CNhs10469.59-29C14.97
testis, adult.CNhs10504.57-7G578.92
testis, embryo E13.CNhs11031.389-23F57.48
testis, embryo E15.CNhs11034.443-27C57.11
testis, embryo E16.CNhs11033.470-26G55.83
testis, embryo E17.CNhs11029.486-18I510.07
testis, embryo E18.CNhs11027.503-18G57.10
testis, neonate N00.CNhs11189.1300-22B76.22
testis, neonate N07.CNhs11222.726-26I46.90
testis, neonate N10.CNhs11204.763-44D98.70
testis, neonate N20.CNhs11110.839-18H331.16
testis, neonate N30.CNhs11130.1391-42E237.16
thymus, adult.CNhs10471.38-12B54.74
thymus, embryo E14.CNhs11041.402-44I410.54
thymus, embryo E15.CNhs11005.430-45I27.09
thymus, embryo E16.CNhs11002.456-26C57.02
thymus, embryo E17.CNhs10581.478-18C16.09
thymus, embryo E18.CNhs10595.1273-19G46.95
thymus, neonate N02.CNhs11181.1541-43F86.25
thymus, neonate N03.CNhs11137.2104-43C76.79
thymus, neonate N06.CNhs11197.681-26C45.65
thymus, neonate N07.CNhs11211.713-19D35.26
thymus, neonate N10.CNhs11194.748-24E43.73
thymus, neonate N20.CNhs11186.820-7A25.75
thymus, neonate N25.CNhs11125.1362-25G76.73
thymus, neonate N30.CNhs11132.1393-42G25.49
tongue, adult.CNhs10499.32-1B49.07
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H32.66
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F71.88
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G53.19
urinary bladder, adult.CNhs10481.879-12E46.57
uterus, adult pregnant day19.CNhs10497.590-15F55.82
uterus, adult.CNhs10509.92-27E54.95
vagina, adult.CNhs10502.89-27D55.36
vesicular gland, adult.CNhs10491.51-27F83.51
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A112.99
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A28.29
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A311.46
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D77.56
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A410.28
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A56.80
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A611.48
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A79.91
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A87.25
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A98.28
whole body, embryo E11.CNhs11014.324-5I87.78
whole body, embryo E12.CNhs10587.857-27C97.18
whole body, embryo E13.CNhs10512.372-23H27.17
whole body, embryo E14.5.CNhs10578.420-27D27.78
whole body, embryo E14.CNhs10519.395-14B18.59
whole body, embryo E16.CNhs10514.453-14F29.56
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G56.45
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G57.21
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G57.38
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G57.08
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G54.82
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G56.04
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G510.68
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G510.05
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G510.22
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G57.14
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G510.31
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G510.22
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G515.66
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G57.80
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G56.51
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G58.16
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G59.30
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G56.83
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G57.72
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G57.53
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G510.24
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G58.16
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G57.88
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G55.61
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G56.64
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G59.46
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G510.64
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G59.61
whole body, embryo E17.5.CNhs10513.490-9F910.03
whole body, embryo E17.CNhs10517.475-3I59.74
whole body, embryo E18.CNhs10516.493-3B39.59
whole body, neonate N00.CNhs10525.657-19C28.38
whole body, neonate N01.CNhs10576.659-23C69.37
whole body, neonate N06.CNhs10515.692-21D111.91
whole body, neonate N10.CNhs10518.761-6B47.65





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
nervous system1.53e-2075
central nervous system1.13e-1973
structure with developmental contribution from neural crest1.57e-1892
neural tube4.72e-1752
neural rod4.72e-1752
future spinal cord4.72e-1752
neural keel4.72e-1752
regional part of nervous system1.09e-1654
neurectoderm4.04e-1564
neural plate4.04e-1564
presumptive neural plate4.04e-1564
ectoderm-derived structure2.88e-1495
ectoderm2.88e-1495
presumptive ectoderm2.88e-1495
brain4.98e-1447
future brain4.98e-1447
regional part of brain1.09e-1346
gray matter1.27e-1134
ecto-epithelium1.45e-1173
anterior neural tube2.12e-1140
regional part of forebrain3.59e-1139
forebrain3.59e-1139
future forebrain3.59e-1139
pre-chordal neural plate3.52e-1049
brain grey matter7.75e-0929
regional part of telencephalon7.75e-0929
telencephalon7.75e-0929
posterior neural tube9.16e-0712
chordal neural plate9.16e-0712
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